Wall clock time and date at job start Wed Apr 1 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48505 * 109.47161 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47296 * 119.99737 * 3 2 1 7 7 C 1.38809 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46654 * 125.29109 * 180.02562 * 9 7 2 11 11 C 1.53515 * 107.04931 * 197.35876 * 10 9 7 12 12 H 1.09006 * 112.80286 * 211.53517 * 11 10 9 13 13 C 1.54784 * 109.68354 * 84.08984 * 11 10 9 14 14 C 1.54860 * 101.41862 * 212.86984 * 13 11 10 15 15 N 1.47346 * 104.90363 * 37.27358 * 14 13 11 16 16 C 1.34779 * 125.51659 * 156.70641 * 15 14 13 17 17 O 1.21284 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00312 * 0.03147 * 16 15 14 19 19 H 1.09001 * 110.66607 * 301.77553 * 18 16 15 20 20 C 1.54699 * 110.75471 * 64.99526 * 18 16 15 21 21 C 1.51643 * 101.93437 * 143.61355 * 20 18 16 22 22 C 1.37756 * 132.14202 * 164.56936 * 21 20 18 23 23 C 1.38531 * 119.96055 * 180.38167 * 22 21 20 24 24 F 1.35098 * 120.14338 * 179.97438 * 23 22 21 25 25 C 1.38478 * 119.71492 * 0.02562 * 23 22 21 26 26 C 1.37929 * 120.32069 * 359.82449 * 25 23 22 27 27 C 1.38861 * 107.05297 * 344.61445 * 21 20 18 28 28 O 1.36196 * 111.22264 * 358.92539 * 27 21 20 29 29 C 1.47250 * 108.95815 * 336.72944 * 15 14 13 30 30 H 1.08996 * 112.73273 * 236.15165 * 29 15 14 31 31 C 1.46495 * 125.28809 * 0.02562 * 9 7 2 32 32 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 33 33 H 1.08997 * 109.91349 * 316.71276 * 10 9 7 34 34 H 1.09000 * 109.91582 * 77.80854 * 10 9 7 35 35 H 1.09000 * 111.03140 * 330.96181 * 13 11 10 36 36 H 1.08996 * 111.03373 * 94.87921 * 13 11 10 37 37 H 1.09000 * 110.36036 * 278.41068 * 14 13 11 38 38 H 1.09001 * 110.43344 * 156.17149 * 14 13 11 39 39 H 1.08994 * 110.93623 * 261.77894 * 20 18 16 40 40 H 1.09011 * 110.93545 * 25.42286 * 20 18 16 41 41 H 1.08007 * 120.01902 * 0.40896 * 22 21 20 42 42 H 1.07997 * 119.83558 * 179.85360 * 25 23 22 43 43 H 1.08004 * 119.86398 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.71712 * 297.79105 * 31 9 7 45 45 H 1.09001 * 109.71175 * 58.38891 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9388 -3.7202 0.0016 11 6 0.8547 -4.7149 -0.4367 12 1 0.9736 -5.6976 0.0199 13 6 0.7824 -4.7598 -1.9822 14 6 -0.7256 -5.0275 -2.2109 15 7 -1.4116 -4.2498 -1.1642 16 6 -2.6868 -3.8170 -1.2194 17 8 -3.1519 -3.1815 -0.2970 18 6 -3.5348 -4.1227 -2.4270 19 1 -3.0730 -3.7268 -3.3315 20 6 -3.7761 -5.6453 -2.5562 21 6 -5.1995 -5.6942 -3.0767 22 6 -5.9357 -6.7009 -3.6618 23 6 -7.2419 -6.4627 -4.0571 24 9 -7.9670 -7.4471 -4.6317 25 6 -7.8007 -5.2108 -3.8617 26 6 -7.0646 -4.2038 -3.2731 27 6 -5.7523 -4.4374 -2.8693 28 8 -4.8649 -3.6028 -2.2603 29 6 -0.4781 -4.0217 -0.0485 30 1 -0.8646 -4.3827 0.9046 31 6 -0.1330 -2.5231 -0.0005 32 1 -0.4851 0.8400 -0.0004 33 1 2.7722 -3.7459 -0.7004 34 1 2.2898 -3.9666 1.0037 35 1 1.0814 -3.8054 -2.4156 36 1 1.3883 -5.5744 -2.3787 37 1 -0.9435 -6.0896 -2.0984 38 1 -1.0278 -4.6819 -3.1995 39 1 -3.0842 -6.0900 -3.2715 40 1 -3.6986 -6.1357 -1.5857 41 1 -5.4949 -7.6754 -3.8118 42 1 -8.8180 -5.0223 -4.1713 43 1 -7.5079 -3.2303 -3.1238 44 1 -0.5440 -2.0802 0.9067 45 1 -0.5480 -2.0218 -0.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076312607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:08 Heat of formation + Delta-G solvation = -34.755219 kcal Electronic energy + Delta-G solvation = -30584.834245 eV Core-core repulsion = 26290.612877 eV Total energy + Delta-G solvation = -4294.221368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.10439 -41.61541 -40.00542 -38.06406 -37.06402 -35.03294 -33.22371 -32.24052 -30.74417 -30.17129 -29.88066 -28.49753 -26.83873 -24.92282 -24.37503 -22.87475 -22.38972 -22.14822 -20.65495 -19.79683 -18.87599 -17.92163 -17.53203 -17.36867 -17.24745 -16.71670 -15.92223 -15.80381 -15.60733 -14.97010 -14.57283 -14.49453 -14.21006 -14.12835 -13.71073 -13.56788 -13.39464 -13.25270 -13.19659 -12.90981 -12.74128 -12.64332 -12.23605 -12.02647 -11.77070 -11.55311 -11.32265 -11.20487 -11.04786 -10.98856 -10.77077 -10.59664 -10.26394 -10.07551 -9.90561 -9.71888 -9.51462 -9.39596 -8.58899 -8.31707 -8.31187 -6.82000 -5.67073 -3.04276 0.77710 0.86703 2.50193 2.79261 3.14072 3.40505 3.41602 3.45395 3.47948 3.80462 4.08346 4.22746 4.40337 4.50454 4.54426 4.71701 4.74080 4.77307 4.86298 4.95709 5.13423 5.17592 5.30028 5.37855 5.39665 5.46569 5.52286 5.54389 5.63635 5.73436 5.75898 5.81604 5.86833 5.97597 5.99561 6.12068 6.24624 6.31108 6.49103 6.54443 6.58543 6.80187 6.84784 7.52372 7.61303 7.81304 7.89612 8.29420 8.39149 9.23576 9.84493 10.46805 11.42152 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002639 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.157407 B =10608.587059 C =11661.001366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.110 4.110 12 H 0.089 0.911 13 C -0.120 4.120 14 C 0.097 3.903 15 N -0.601 5.601 16 C 0.530 3.470 17 O -0.502 6.502 18 C 0.070 3.930 19 H 0.114 0.886 20 C -0.096 4.096 21 C -0.148 4.148 22 C -0.100 4.100 23 C 0.064 3.936 24 F -0.139 7.139 25 C -0.115 4.115 26 C -0.109 4.109 27 C 0.105 3.895 28 O -0.266 6.266 29 C 0.116 3.884 30 H 0.083 0.917 31 C 0.178 3.822 32 H 0.254 0.746 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.045 0.955 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -16.887 -10.122 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.130 4.130 12 H 0.108 0.892 13 C -0.158 4.158 14 C -0.026 4.026 15 N -0.337 5.337 16 C 0.316 3.684 17 O -0.375 6.375 18 C 0.010 3.990 19 H 0.132 0.868 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.119 4.119 23 C 0.044 3.956 24 F -0.118 7.118 25 C -0.133 4.133 26 C -0.128 4.128 27 C 0.059 3.941 28 O -0.179 6.179 29 C 0.013 3.987 30 H 0.101 0.899 31 C 0.052 3.948 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.977 -16.076 -9.504 21.173 hybrid contribution 0.394 0.626 -0.183 0.762 sum -9.583 -15.449 -9.686 20.600 Atomic orbital electron populations 1.69980 1.04744 1.25288 1.56009 1.24852 0.95687 0.97736 1.01940 0.86223 0.78429 0.83351 0.77841 1.21202 1.21612 1.21131 1.18944 0.90323 0.82235 1.44951 0.90408 1.44121 1.01370 0.99973 1.87429 1.21067 0.93827 0.85712 0.97592 1.22953 0.95535 0.98897 0.95633 0.89249 1.22731 0.93885 1.03251 0.95931 1.22403 0.93667 0.95247 0.91273 1.48417 1.10393 1.54499 1.20431 1.19355 0.81074 0.80388 0.87629 1.90808 1.71245 1.37560 1.37854 1.23195 0.83410 0.93570 0.98817 0.86806 1.21785 0.93202 0.94955 1.03417 1.20516 0.97224 0.93785 1.03385 1.20159 0.92412 0.99739 0.99549 1.17347 0.90334 0.86320 1.01569 1.91495 1.77109 1.60718 1.82491 1.20846 1.00933 0.91163 1.00404 1.20104 0.91296 1.00618 1.00746 1.19694 0.92156 0.88961 0.93289 1.87040 1.14552 1.46190 1.70072 1.22887 0.87135 1.00183 0.88503 0.89937 1.21284 0.84223 0.87131 1.02113 0.93549 0.94319 0.96528 0.89354 0.90341 0.91496 0.91108 0.87700 0.88158 0.84349 0.83789 0.84018 0.93640 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.68 10.23 55.49 0.57 -27.12 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.53 10.25 -15.06 -0.15 -6.69 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.07 3.37 -172.28 -0.58 -15.65 16 10 C 0.14 2.79 6.50 -3.69 -0.02 2.76 16 11 C -0.11 -1.69 3.97 -88.26 -0.35 -2.04 16 12 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.12 -1.55 6.32 -24.81 -0.16 -1.70 16 14 C 0.10 1.11 5.68 -2.60 -0.01 1.09 16 15 N -0.60 -9.70 2.83 -161.93 -0.46 -10.16 16 16 C 0.53 9.42 6.90 -10.99 -0.08 9.35 16 17 O -0.50 -11.54 16.66 -13.51 -0.22 -11.76 16 18 C 0.07 0.95 3.30 -26.99 -0.09 0.86 16 19 H 0.11 1.32 7.80 -51.93 -0.41 0.92 16 20 C -0.10 -0.95 5.79 -26.52 -0.15 -1.10 16 21 C -0.15 -1.58 6.27 -104.10 -0.65 -2.23 16 22 C -0.10 -0.93 10.02 -39.65 -0.40 -1.32 16 23 C 0.06 0.62 7.31 -39.38 -0.29 0.33 16 24 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 25 C -0.11 -1.02 10.00 -39.61 -0.40 -1.42 16 26 C -0.11 -1.13 10.06 -39.31 -0.40 -1.52 16 27 C 0.11 1.32 7.03 -38.97 -0.27 1.05 16 28 O -0.27 -4.18 10.39 -39.43 -0.41 -4.59 16 29 C 0.12 2.16 3.81 -65.93 -0.25 1.91 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 C 0.18 4.42 4.62 -3.60 -0.02 4.40 16 32 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 1.42 7.93 -51.93 -0.41 1.00 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.68 7.46 -51.93 -0.39 0.30 16 39 H 0.10 0.71 7.88 -51.93 -0.41 0.30 16 40 H 0.10 1.01 7.92 -51.92 -0.41 0.60 16 41 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 45 H 0.06 1.58 6.89 -51.93 -0.36 1.22 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.03 367.32 -10.45 -45.48 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.11 Total: -1.14 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -3.79 Total: 3.48 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.47 Total: -52.92 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.63 Total: -16.35 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.03 -10.45 -45.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076312607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.728 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds