Wall clock time and date at job start Wed Apr 1 2020 03:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99755 * 2 1 4 4 H 1.48505 * 109.47161 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47296 * 119.99737 * 3 2 1 7 7 C 1.38809 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46654 * 125.29109 * 180.02562 * 9 7 2 11 11 C 1.53515 * 107.04931 * 197.35876 * 10 9 7 12 12 H 1.09006 * 112.80286 * 211.53517 * 11 10 9 13 13 C 1.54784 * 109.68354 * 84.08984 * 11 10 9 14 14 C 1.54860 * 101.41862 * 212.86984 * 13 11 10 15 15 N 1.47346 * 104.90363 * 37.27358 * 14 13 11 16 16 C 1.34779 * 125.51659 * 156.70641 * 15 14 13 17 17 O 1.21284 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00312 * 0.03147 * 16 15 14 19 19 H 1.09001 * 110.66607 * 301.77553 * 18 16 15 20 20 C 1.54699 * 110.75471 * 64.99526 * 18 16 15 21 21 C 1.51643 * 101.93437 * 143.61355 * 20 18 16 22 22 C 1.37756 * 132.14202 * 164.56936 * 21 20 18 23 23 C 1.38531 * 119.96055 * 180.38167 * 22 21 20 24 24 F 1.35098 * 120.14338 * 179.97438 * 23 22 21 25 25 C 1.38478 * 119.71492 * 0.02562 * 23 22 21 26 26 C 1.37929 * 120.32069 * 359.82449 * 25 23 22 27 27 C 1.38861 * 107.05297 * 344.61445 * 21 20 18 28 28 O 1.36196 * 111.22264 * 358.92539 * 27 21 20 29 29 C 1.47250 * 108.95815 * 336.72944 * 15 14 13 30 30 H 1.08996 * 112.73273 * 236.15165 * 29 15 14 31 31 C 1.46495 * 125.28809 * 0.02562 * 9 7 2 32 32 H 0.96999 * 120.00413 * 0.02562 * 1 2 3 33 33 H 1.08997 * 109.91349 * 316.71276 * 10 9 7 34 34 H 1.09000 * 109.91582 * 77.80854 * 10 9 7 35 35 H 1.09000 * 111.03140 * 330.96181 * 13 11 10 36 36 H 1.08996 * 111.03373 * 94.87921 * 13 11 10 37 37 H 1.09000 * 110.36036 * 278.41068 * 14 13 11 38 38 H 1.09001 * 110.43344 * 156.17149 * 14 13 11 39 39 H 1.08994 * 110.93623 * 261.77894 * 20 18 16 40 40 H 1.09011 * 110.93545 * 25.42286 * 20 18 16 41 41 H 1.08007 * 120.01902 * 0.40896 * 22 21 20 42 42 H 1.07997 * 119.83558 * 179.85360 * 25 23 22 43 43 H 1.08004 * 119.86398 * 180.02562 * 26 25 23 44 44 H 1.09002 * 109.71712 * 297.79105 * 31 9 7 45 45 H 1.09001 * 109.71175 * 58.38891 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9388 -3.7202 0.0016 11 6 0.8547 -4.7149 -0.4367 12 1 0.9736 -5.6976 0.0199 13 6 0.7824 -4.7598 -1.9822 14 6 -0.7256 -5.0275 -2.2109 15 7 -1.4116 -4.2498 -1.1642 16 6 -2.6868 -3.8170 -1.2194 17 8 -3.1519 -3.1815 -0.2970 18 6 -3.5348 -4.1227 -2.4270 19 1 -3.0730 -3.7268 -3.3315 20 6 -3.7761 -5.6453 -2.5562 21 6 -5.1995 -5.6942 -3.0767 22 6 -5.9357 -6.7009 -3.6618 23 6 -7.2419 -6.4627 -4.0571 24 9 -7.9670 -7.4471 -4.6317 25 6 -7.8007 -5.2108 -3.8617 26 6 -7.0646 -4.2038 -3.2731 27 6 -5.7523 -4.4374 -2.8693 28 8 -4.8649 -3.6028 -2.2603 29 6 -0.4781 -4.0217 -0.0485 30 1 -0.8646 -4.3827 0.9046 31 6 -0.1330 -2.5231 -0.0005 32 1 -0.4851 0.8400 -0.0004 33 1 2.7722 -3.7459 -0.7004 34 1 2.2898 -3.9666 1.0037 35 1 1.0814 -3.8054 -2.4156 36 1 1.3883 -5.5744 -2.3787 37 1 -0.9435 -6.0896 -2.0984 38 1 -1.0278 -4.6819 -3.1995 39 1 -3.0842 -6.0900 -3.2715 40 1 -3.6986 -6.1357 -1.5857 41 1 -5.4949 -7.6754 -3.8118 42 1 -8.8180 -5.0223 -4.1713 43 1 -7.5079 -3.2303 -3.1238 44 1 -0.5440 -2.0802 0.9067 45 1 -0.5480 -2.0218 -0.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076312607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:07 Heat of formation + Delta-G solvation = -57.143996 kcal Electronic energy + Delta-G solvation = -30585.805096 eV Core-core repulsion = 26290.612877 eV Total energy + Delta-G solvation = -4295.192218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.85474 -42.58261 -41.30856 -39.37849 -38.09436 -36.67905 -34.41573 -33.71947 -32.26003 -31.24450 -30.72393 -30.00599 -28.33299 -26.54482 -25.70062 -23.84191 -23.34230 -22.96450 -22.35819 -21.12605 -20.26324 -19.01387 -18.80891 -18.35784 -18.22681 -18.13744 -17.16683 -17.08536 -16.56426 -16.41792 -15.96117 -15.56856 -15.46494 -15.24640 -15.11553 -14.73279 -14.43569 -14.32743 -14.11822 -14.03211 -13.99834 -13.68246 -13.53202 -13.34991 -13.20216 -12.95598 -12.93664 -12.67358 -12.62113 -12.21757 -12.12233 -11.88412 -11.84383 -11.78696 -11.49127 -11.42845 -10.91843 -10.72026 -10.10928 -9.69209 -9.15710 -8.91190 -7.85115 -5.24335 0.02039 0.10963 1.35088 1.41176 1.45404 1.52087 1.54881 2.26808 2.46510 2.49695 2.95910 3.21716 3.28849 3.31728 3.51873 3.64964 3.67886 3.76419 3.79327 3.88278 4.03963 4.05661 4.18811 4.33562 4.39567 4.39763 4.51206 4.56688 4.61069 4.66120 4.73238 4.81113 4.88640 4.97618 5.02183 5.07081 5.11013 5.20331 5.21873 5.22392 5.44265 5.47972 5.53747 5.59130 5.78613 6.00013 6.17693 6.48527 7.03458 7.08823 7.78042 8.38402 9.22304 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002639 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.157407 B =10608.587059 C =11661.001366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.073 4.073 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.623 5.623 10 C 0.134 3.866 11 C -0.090 4.090 12 H 0.139 0.861 13 C -0.114 4.114 14 C 0.091 3.909 15 N -0.598 5.598 16 C 0.520 3.480 17 O -0.575 6.575 18 C 0.072 3.928 19 H 0.133 0.867 20 C -0.082 4.082 21 C -0.146 4.146 22 C -0.093 4.093 23 C 0.059 3.941 24 F -0.140 7.140 25 C -0.110 4.110 26 C -0.117 4.117 27 C 0.069 3.931 28 O -0.308 6.308 29 C 0.118 3.882 30 H 0.075 0.925 31 C 0.199 3.801 32 H 0.241 0.759 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.049 0.951 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.147 0.853 44 H -0.021 1.021 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -20.994 -12.569 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.109 4.109 12 H 0.156 0.844 13 C -0.152 4.152 14 C -0.029 4.029 15 N -0.332 5.332 16 C 0.308 3.692 17 O -0.454 6.454 18 C 0.013 3.987 19 H 0.150 0.850 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.112 4.112 23 C 0.040 3.960 24 F -0.119 7.119 25 C -0.128 4.128 26 C -0.135 4.135 27 C 0.024 3.976 28 O -0.222 6.222 29 C 0.014 3.986 30 H 0.093 0.907 31 C 0.072 3.928 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.185 0.815 42 H 0.186 0.814 43 H 0.165 0.835 44 H -0.003 1.003 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.610 -20.262 -11.997 25.072 hybrid contribution -0.013 1.890 0.604 1.984 sum -8.623 -18.372 -11.392 23.274 Atomic orbital electron populations 1.70305 1.06622 1.24970 1.58237 1.25783 0.96433 1.01567 1.02757 0.85131 0.76980 0.78542 0.78568 1.19546 1.22846 1.20037 1.19456 0.91146 0.83514 1.42867 0.89146 1.44433 1.01745 1.01761 1.86996 1.21382 0.95536 0.83868 0.98296 1.23024 0.90697 0.99246 0.97928 0.84370 1.22751 0.95727 1.03242 0.93478 1.22877 0.91956 0.97325 0.90759 1.48491 1.09723 1.54171 1.20839 1.20298 0.81755 0.79034 0.88140 1.90765 1.72982 1.40817 1.40804 1.23241 0.82284 0.96642 0.96524 0.84985 1.21819 0.93696 0.91745 1.04640 1.20602 0.97625 0.93135 1.03313 1.20389 0.92024 1.00459 0.98304 1.17526 0.90697 0.86404 1.01374 1.91499 1.77170 1.60720 1.82488 1.21080 1.01803 0.90565 0.99360 1.20317 0.90907 1.01475 1.00830 1.20067 0.92790 0.89834 0.94958 1.86987 1.15854 1.47973 1.71393 1.22602 0.90030 0.96019 0.89988 0.90692 1.20801 0.84082 0.91089 0.96804 0.94987 0.92723 0.96106 0.93249 0.85282 0.86334 0.88805 0.83179 0.88153 0.81496 0.81408 0.83547 1.00324 0.97137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.24 10.23 21.65 0.22 -62.02 16 2 C -0.07 -4.34 5.48 84.86 0.47 -3.87 16 3 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.70 10.25 84.03 0.86 -12.84 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.62 -32.25 3.37 -698.96 -2.36 -34.60 16 10 C 0.13 4.99 6.50 86.52 0.56 5.55 16 11 C -0.09 -2.46 3.97 -9.27 -0.04 -2.50 16 12 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 13 C -0.11 -2.45 6.32 31.84 0.20 -2.25 16 14 C 0.09 1.67 5.68 86.85 0.49 2.16 16 15 N -0.60 -18.94 2.83 -784.60 -2.22 -21.16 16 16 C 0.52 19.20 6.90 87.66 0.61 19.80 16 17 O -0.58 -28.95 16.66 15.18 0.25 -28.69 16 18 C 0.07 1.93 3.30 30.43 0.10 2.03 16 19 H 0.13 2.93 7.80 -2.39 -0.02 2.91 16 20 C -0.08 -1.36 5.79 30.73 0.18 -1.18 16 21 C -0.15 -2.76 6.27 -19.53 -0.12 -2.89 16 22 C -0.09 -1.42 10.02 22.23 0.22 -1.20 16 23 C 0.06 0.99 7.31 22.40 0.16 1.16 16 24 F -0.14 -2.42 17.27 44.97 0.78 -1.65 16 25 C -0.11 -1.77 10.00 22.25 0.22 -1.55 16 26 C -0.12 -2.38 10.06 22.44 0.23 -2.15 16 27 C 0.07 1.72 7.03 22.67 0.16 1.88 16 28 O -0.31 -10.14 10.39 -77.56 -0.81 -10.95 16 29 C 0.12 4.47 3.81 45.88 0.17 4.65 16 30 H 0.08 2.92 8.14 -2.39 -0.02 2.91 16 31 C 0.20 10.60 4.62 86.67 0.40 11.00 16 32 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.05 1.88 7.95 -2.39 -0.02 1.86 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.05 1.48 7.93 -2.39 -0.02 1.46 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.36 7.46 -2.39 -0.02 1.34 16 39 H 0.15 1.09 7.88 -2.39 -0.02 1.07 16 40 H 0.10 1.71 7.92 -2.38 -0.02 1.69 16 41 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 44 H -0.02 -1.40 7.51 -2.39 -0.02 -1.42 16 45 H 0.01 0.64 6.89 -2.39 -0.02 0.63 16 Total: -1.00 -89.47 367.32 3.79 -85.69 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.01 Total: 5.98 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 4.88 Total: 17.79 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.36 Total: -117.78 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.55 Total: -39.64 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -89.47 3.79 -85.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076312607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.544 kcal (2) G-P(sol) polarization free energy of solvation -89.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds