Wall clock time and date at job start Wed Apr 1 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 H 1.09005 * 109.47209 * 34.99599 * 14 13 11 16 16 C 1.52999 * 109.47118 * 274.99901 * 14 13 11 17 17 C 1.52997 * 109.46978 * 299.99827 * 16 14 13 18 18 C 1.53003 * 109.47069 * 299.99980 * 17 16 14 19 19 C 1.52999 * 109.47204 * 60.00159 * 18 17 16 20 20 H 1.09003 * 109.47402 * 59.99666 * 19 18 17 21 21 N 1.46494 * 109.47109 * 180.02562 * 19 18 17 22 22 C 1.34777 * 120.00110 * 274.99536 * 21 19 18 23 23 O 1.21287 * 119.99616 * 0.02562 * 22 21 19 24 24 C 1.50693 * 120.00376 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.47235 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47119 * 179.97438 * 25 24 22 27 27 F 1.39898 * 109.47020 * 179.97438 * 26 25 24 28 28 C 1.52996 * 109.47534 * 154.99528 * 14 13 11 29 29 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 31 31 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 32 32 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 33 33 H 1.09000 * 109.47203 * 59.99373 * 16 14 13 34 34 H 1.09003 * 109.47402 * 180.02562 * 16 14 13 35 35 H 1.09006 * 109.47339 * 179.97438 * 17 16 14 36 36 H 1.09006 * 109.47573 * 60.00062 * 17 16 14 37 37 H 1.08994 * 109.47051 * 299.99787 * 18 17 16 38 38 H 1.09005 * 109.47058 * 179.97438 * 18 17 16 39 39 H 0.96996 * 120.00171 * 95.00107 * 21 19 18 40 40 H 1.09001 * 109.47176 * 299.99840 * 24 22 21 41 41 H 1.08997 * 109.47288 * 60.00096 * 24 22 21 42 42 H 1.09003 * 109.47051 * 299.99593 * 25 24 22 43 43 H 1.08997 * 109.47247 * 59.99651 * 25 24 22 44 44 H 1.09003 * 109.46968 * 299.99816 * 26 25 24 45 45 H 1.09007 * 109.47242 * 59.99836 * 26 25 24 46 46 H 1.08994 * 109.47277 * 179.97438 * 28 14 13 47 47 H 1.08996 * 109.47217 * 300.00021 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 1 1.4146 -7.7571 -0.6237 16 6 2.0330 -8.1559 1.4010 17 6 3.3180 -8.0969 2.2292 18 6 4.3638 -9.0299 1.6152 19 6 4.6610 -8.5891 0.1806 20 1 5.0432 -7.5683 0.1859 21 7 5.6618 -9.4828 -0.4074 22 6 6.9739 -9.2530 -0.2024 23 8 7.3260 -8.3066 0.4694 24 6 8.0034 -10.1720 -0.8077 25 6 9.4045 -9.6915 -0.4240 26 6 10.4498 -10.6249 -1.0381 27 9 11.7308 -10.1852 -0.6877 28 6 3.3758 -8.6481 -0.6476 29 1 -0.4849 0.8401 0.0004 30 1 3.1244 -3.7267 -0.9039 31 1 3.1244 -3.7361 0.8761 32 1 3.8007 -6.1835 -0.0260 33 1 1.2880 -7.4911 1.8384 34 1 1.6511 -9.1768 1.3957 35 1 3.1062 -8.4105 3.2514 36 1 3.7004 -7.0761 2.2346 37 1 3.9815 -10.0506 1.6099 38 1 5.2795 -8.9875 2.2050 39 1 5.3802 -10.2398 -0.9444 40 1 7.8518 -11.1844 -0.4333 41 1 7.9018 -10.1669 -1.8929 42 1 9.5565 -8.6790 -0.7981 43 1 9.5059 -9.6968 0.6612 44 1 10.2976 -11.6372 -0.6636 45 1 10.3485 -10.6199 -2.1234 46 1 2.9938 -9.6688 -0.6526 47 1 3.5875 -8.3341 -1.6697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280730708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:11 Heat of formation + Delta-G solvation = -156.078138 kcal Electronic energy + Delta-G solvation = -27634.344022 eV Core-core repulsion = 23470.305649 eV Total energy + Delta-G solvation = -4164.038373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.02799 -40.71273 -39.60479 -37.87605 -34.87855 -34.47437 -33.17981 -32.41019 -30.70914 -30.07414 -28.32471 -27.48102 -25.46205 -23.32574 -22.85362 -22.08019 -21.20314 -20.59283 -19.28312 -17.91405 -17.62441 -17.01564 -16.91481 -16.24170 -15.94621 -15.75140 -15.73090 -15.31763 -15.09211 -14.98297 -14.78629 -14.31520 -14.04490 -14.02886 -13.68714 -13.23205 -13.10614 -12.88616 -12.75316 -12.46537 -12.33432 -12.29768 -12.02728 -11.93360 -11.62731 -11.53049 -11.15932 -11.02946 -11.02262 -10.98859 -10.87187 -10.74681 -10.59362 -10.13112 -9.80652 -9.45334 -9.36663 -9.04619 -8.88210 -8.22756 -6.48258 -6.20030 -3.90378 2.24026 2.66620 3.04524 3.10603 3.25289 3.28986 3.32985 3.72573 4.01213 4.16159 4.22378 4.23171 4.32584 4.44184 4.50975 4.61007 4.67122 4.70626 4.83307 4.91445 4.94220 5.05670 5.14204 5.15033 5.18046 5.20621 5.31825 5.35757 5.42586 5.53135 5.62107 5.71234 5.72503 5.75773 5.88088 5.92480 6.01990 6.06441 6.13931 6.16946 6.20230 6.66551 7.06342 7.61278 7.70307 7.82646 8.36954 8.62226 9.25356 10.87295 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.002068 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.728333 B =13534.527576 C =15476.307849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.734 5.734 14 C 0.153 3.847 15 H 0.094 0.906 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.127 4.127 19 C 0.142 3.858 20 H 0.089 0.911 21 N -0.728 5.728 22 C 0.512 3.488 23 O -0.533 6.533 24 C -0.139 4.139 25 C -0.140 4.140 26 C 0.062 3.938 27 F -0.217 7.217 28 C -0.133 4.133 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.230 -27.994 -2.310 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.306 4.306 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.390 5.390 14 C 0.047 3.953 15 H 0.112 0.888 16 C -0.172 4.172 17 C -0.154 4.154 18 C -0.165 4.165 19 C 0.038 3.962 20 H 0.107 0.893 21 N -0.379 5.379 22 C 0.298 3.702 23 O -0.409 6.409 24 C -0.179 4.179 25 C -0.179 4.179 26 C 0.007 3.993 27 F -0.198 7.198 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.344 -27.512 -1.825 30.632 hybrid contribution 2.318 0.948 -0.248 2.517 sum 15.662 -26.565 -2.074 30.908 Atomic orbital electron populations 1.70012 1.05929 1.27527 1.46861 1.24991 0.95035 0.99011 0.94545 0.86227 0.79236 0.81236 0.78830 1.19946 1.20822 1.19927 1.22836 0.94893 0.91691 1.58971 0.90990 1.85348 1.04909 0.96282 1.96719 1.23546 1.06577 0.95512 1.04926 1.20293 0.86536 0.86278 0.74850 1.90692 1.15311 1.85580 1.47558 1.46172 1.09854 1.05225 1.77704 1.20776 0.97002 0.80956 0.96551 0.88831 1.21974 0.98085 1.01776 0.95373 1.21462 0.94831 1.00165 0.98981 1.21920 0.99615 0.99662 0.95316 1.21014 0.87511 0.94923 0.92760 0.89327 1.46100 1.05787 1.31674 1.54338 1.20610 0.83233 0.85819 0.80566 1.90762 1.80612 1.30494 1.39036 1.21552 0.93813 0.99921 1.02647 1.21927 0.92099 1.00669 1.03169 1.21996 0.78215 0.98342 1.00751 1.92785 1.41513 1.91557 1.93995 1.22102 0.94487 1.00887 0.99697 0.92158 0.89305 0.89247 0.76880 0.90611 0.91196 0.91584 0.91392 0.91768 0.91489 0.76614 0.88510 0.88430 0.89774 0.89875 0.90761 0.90710 0.89879 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 11 C 0.53 9.76 7.81 -10.99 -0.09 9.67 16 12 O -0.52 -11.38 15.52 5.56 0.09 -11.29 16 13 N -0.73 -9.50 4.23 -53.81 -0.23 -9.72 16 14 C 0.15 1.61 2.78 -67.93 -0.19 1.42 16 15 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 16 C -0.13 -1.35 5.60 -26.73 -0.15 -1.50 16 17 C -0.12 -1.10 5.77 -26.73 -0.15 -1.25 16 18 C -0.13 -1.02 5.49 -26.73 -0.15 -1.16 16 19 C 0.14 1.09 2.28 -67.93 -0.16 0.93 16 20 H 0.09 0.88 5.94 -51.93 -0.31 0.57 16 21 N -0.73 -4.17 5.08 -53.81 -0.27 -4.45 16 22 C 0.51 3.93 7.79 -10.99 -0.09 3.84 16 23 O -0.53 -6.63 15.65 5.55 0.09 -6.54 16 24 C -0.14 -0.54 5.70 -27.88 -0.16 -0.70 16 25 C -0.14 -0.82 4.96 -26.73 -0.13 -0.95 16 26 C 0.06 0.28 7.55 37.16 0.28 0.56 16 27 F -0.22 -1.85 17.36 2.25 0.04 -1.82 16 28 C -0.13 -0.92 5.08 -26.73 -0.14 -1.06 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.40 4.45 6.87 -40.82 -0.28 4.17 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 1.06 8.60 -40.82 -0.35 0.71 16 40 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 41 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -37.12 399.23 -9.08 -46.20 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.61 Total: 0.60 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.69 Total: -6.23 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.23 Total: -39.74 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.17 Total: -17.84 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.12 -9.08 -46.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280730708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.878 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds