Wall clock time and date at job start Wed Apr 1 2020 04:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48508 * 109.47249 * 274.99596 * 3 2 1 5 5 H 1.48500 * 109.47460 * 34.99688 * 3 2 1 6 6 H 1.48505 * 109.47081 * 155.00011 * 3 2 1 7 7 C 1.38805 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00476 * 149.07866 * 7 2 1 9 9 N 1.36937 * 120.00019 * 329.08246 * 7 2 1 10 10 C 1.46933 * 120.62939 * 165.56421 * 9 7 2 11 11 C 1.53198 * 108.77081 * 126.41255 * 10 9 7 12 12 C 1.53040 * 109.31050 * 54.63802 * 11 10 9 13 13 C 1.53005 * 109.45726 * 178.62514 * 12 11 10 14 14 O 1.42895 * 109.47322 * 178.98895 * 13 12 11 15 15 N 1.46495 * 109.46323 * 58.65415 * 12 11 10 16 16 C 1.34778 * 120.00158 * 56.06565 * 15 12 11 17 17 O 1.21542 * 120.00005 * 4.56391 * 16 15 12 18 18 C 1.47872 * 119.99817 * 184.55663 * 16 15 12 19 19 C 1.39450 * 121.11833 * 359.72119 * 18 16 15 20 20 C 1.38626 * 119.37641 * 179.73580 * 19 18 16 21 21 N 1.31582 * 121.63195 * 0.57600 * 20 19 18 22 22 C 1.32206 * 121.87001 * 359.69947 * 21 20 19 23 23 N 1.37214 * 134.67253 * 179.97438 * 22 21 20 24 24 H 0.96997 * 125.87207 * 0.02562 * 23 22 21 25 25 N 1.28788 * 108.26091 * 179.97438 * 23 22 21 26 26 N 1.28690 * 111.75432 * 0.02562 * 25 23 22 27 27 C 1.34391 * 109.15522 * 0.02562 * 26 25 23 28 28 C 1.53041 * 109.53862 * 298.62711 * 12 11 10 29 29 C 1.46921 * 120.63271 * 345.58717 * 9 7 2 30 30 H 0.97004 * 120.00075 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58738 * 6.62639 * 10 9 7 32 32 H 1.09000 * 109.58687 * 246.20008 * 10 9 7 33 33 H 1.08995 * 109.49910 * 294.67989 * 11 10 9 34 34 H 1.09006 * 109.49170 * 174.58629 * 11 10 9 35 35 H 1.09001 * 109.46886 * 298.99071 * 13 12 11 36 36 H 1.08998 * 109.46988 * 58.98925 * 13 12 11 37 37 H 0.96696 * 114.00452 * 180.02562 * 14 13 12 38 38 H 0.96996 * 119.99973 * 236.06776 * 15 12 11 39 39 H 1.08001 * 120.31255 * 359.97438 * 19 18 16 40 40 H 1.07997 * 119.17794 * 180.27782 * 20 19 18 41 41 H 1.09003 * 109.49589 * 181.31947 * 28 12 11 42 42 H 1.08993 * 109.49661 * 301.41779 * 28 12 11 43 43 H 1.09002 * 109.58498 * 353.37336 * 29 9 7 44 44 H 1.09002 * 109.58700 * 113.79782 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2021 0.0005 8 1 2.9751 -1.2689 -0.4800 9 7 1.4714 -2.3035 0.6104 10 6 2.0217 -3.6425 0.3591 11 6 2.3588 -4.2970 1.7026 12 6 1.1170 -4.2854 2.5969 13 6 1.4404 -4.9691 3.9270 14 8 0.2881 -4.9375 4.7714 15 7 0.0287 -5.0047 1.9305 16 6 0.2089 -6.2790 1.5302 17 8 1.2438 -6.8587 1.7954 18 6 -0.8525 -6.9719 0.7687 19 6 -2.0511 -6.3311 0.4569 20 6 -3.0194 -7.0131 -0.2636 21 7 -2.8414 -8.2573 -0.6529 22 6 -1.7300 -8.9207 -0.3838 23 7 -1.2737 -10.1870 -0.6505 24 1 -1.7554 -10.8739 -1.1374 25 7 -0.0955 -10.3064 -0.1443 26 7 0.2829 -9.2258 0.4433 27 6 -0.6891 -8.3036 0.3392 28 6 0.6879 -2.8398 2.8582 29 6 0.3319 -2.1688 1.5279 30 1 -0.4850 0.8401 -0.0004 31 1 2.9259 -3.5588 -0.2437 32 1 1.2838 -4.2479 -0.1674 33 1 3.1613 -3.7408 2.1870 34 1 2.6777 -5.3260 1.5360 35 1 1.7278 -6.0043 3.7429 36 1 2.2625 -4.4449 4.4144 37 1 0.4209 -5.3541 5.6339 38 1 -0.8216 -4.5639 1.7772 39 1 -2.2219 -5.3118 0.7704 40 1 -3.9447 -6.5122 -0.5072 41 1 -0.1825 -2.8316 3.5143 42 1 1.5062 -2.2974 3.3318 43 1 0.1212 -1.1127 1.6963 44 1 -0.5438 -2.6540 1.0967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485020607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:58 Heat of formation + Delta-G solvation = 85.323276 kcal Electronic energy + Delta-G solvation = -31503.923912 eV Core-core repulsion = 27267.122251 eV Total energy + Delta-G solvation = -4236.801661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.59397 -40.45719 -39.13757 -37.51230 -36.13930 -34.36683 -34.18149 -32.70590 -31.56166 -31.00966 -30.28980 -29.84516 -26.78535 -25.74907 -24.08502 -23.92169 -23.43332 -22.41259 -21.56053 -20.68219 -19.13791 -18.91434 -18.46235 -17.58284 -17.10559 -16.81767 -16.80244 -15.71016 -15.33909 -15.01559 -14.92446 -14.78522 -14.26948 -14.08644 -13.66155 -13.49476 -13.44044 -13.12314 -12.99112 -12.71213 -12.52944 -12.45910 -11.86340 -11.82616 -11.70301 -11.47037 -11.34525 -11.07963 -10.69835 -10.48475 -10.39452 -10.22667 -9.99630 -9.80861 -9.73000 -9.64894 -9.50552 -9.27910 -9.15372 -8.71216 -8.38345 -6.88190 -5.87620 -3.08890 -0.14261 0.64797 1.91203 2.00826 2.80717 3.10356 3.37199 3.46662 3.50800 3.54883 3.58124 4.02247 4.22125 4.35345 4.40837 4.51120 4.55970 4.95740 5.16794 5.23446 5.25247 5.32567 5.41857 5.51674 5.53323 5.59416 5.73493 5.93707 5.94818 6.04468 6.22073 6.26073 6.35113 6.50803 6.54105 6.60925 6.73253 6.85971 6.94861 7.23203 7.24147 7.53876 7.72297 7.77636 7.79939 7.96234 8.32303 8.36529 9.14433 9.82760 10.34195 11.21548 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003355 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.836570 B = 8342.921308 C = 9090.519616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.000 4.000 3 Si 0.886 3.114 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.592 5.592 10 C 0.154 3.846 11 C -0.147 4.147 12 C 0.195 3.805 13 C 0.062 3.938 14 O -0.568 6.568 15 N -0.690 5.690 16 C 0.554 3.446 17 O -0.508 6.508 18 C -0.002 4.002 19 C -0.139 4.139 20 C 0.165 3.835 21 N -0.463 5.463 22 C 0.213 3.787 23 N -0.408 5.408 24 H 0.456 0.544 25 N -0.003 5.003 26 N -0.207 5.207 27 C 0.003 3.997 28 C -0.140 4.140 29 C 0.160 3.840 30 H 0.253 0.747 31 H 0.054 0.946 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.371 0.629 38 H 0.401 0.599 39 H 0.161 0.839 40 H 0.184 0.816 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 -15.291 4.079 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.198 4.198 3 Si 0.716 3.284 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.315 5.315 10 C 0.027 3.973 11 C -0.187 4.187 12 C 0.109 3.891 13 C -0.016 4.016 14 O -0.372 6.372 15 N -0.341 5.341 16 C 0.339 3.661 17 O -0.383 6.383 18 C -0.019 4.019 19 C -0.163 4.163 20 C -0.007 4.007 21 N -0.177 5.177 22 C -0.031 4.031 23 N -0.138 5.138 24 H 0.304 0.696 25 N 0.014 4.986 26 N -0.083 5.083 27 C -0.126 4.126 28 C -0.179 4.179 29 C 0.034 3.966 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.217 0.783 38 H 0.237 0.763 39 H 0.178 0.822 40 H 0.201 0.799 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -6.186 -16.626 3.503 18.082 hybrid contribution -0.380 1.399 0.266 1.474 sum -6.566 -15.226 3.769 17.005 Atomic orbital electron populations 1.70170 1.05313 1.25595 1.52748 1.24635 0.94939 0.98143 1.02095 0.86514 0.79878 0.84448 0.77600 1.21729 1.21550 1.20564 1.19224 0.99837 0.87498 1.31287 0.91072 1.44226 1.36219 1.01441 1.49579 1.20760 0.96862 0.86730 0.92926 1.22404 0.95895 1.01986 0.98366 1.20366 0.87360 0.92065 0.89296 1.22745 0.87345 1.00851 0.90691 1.86460 1.37876 1.82855 1.30031 1.45853 1.17234 1.12058 1.59003 1.17769 0.86429 0.82028 0.79897 1.90772 1.27068 1.65519 1.54962 1.19820 0.95124 0.90388 0.96552 1.22512 0.92754 1.02151 0.98854 1.22868 0.99002 0.87462 0.91378 1.66322 1.20222 1.09583 1.21591 1.19870 0.93936 0.88279 1.00973 1.44667 1.13996 1.11105 1.44070 0.69588 1.78246 0.94617 1.19289 1.06470 1.75559 1.22247 0.95425 1.15038 1.20112 0.93443 0.95946 1.03142 1.22404 1.01703 0.92478 1.01321 1.20990 0.88144 1.01930 0.85540 0.93704 0.92712 0.96703 0.91209 0.90311 0.91827 0.93337 0.78329 0.76302 0.82180 0.79936 0.91593 0.91040 0.87958 0.96975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 11.18 55.49 0.62 -23.92 16 2 C 0.00 -0.01 4.71 -17.44 -0.08 -0.09 16 3 Si 0.89 21.00 29.65 -169.99 -5.04 15.96 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.25 -6.63 9.63 -15.06 -0.15 -6.77 16 8 H 0.07 1.88 7.90 -52.48 -0.41 1.47 16 9 N -0.59 -13.99 3.03 -172.31 -0.52 -14.51 16 10 C 0.15 3.19 6.26 -3.70 -0.02 3.17 16 11 C -0.15 -2.64 4.60 -26.61 -0.12 -2.76 16 12 C 0.19 3.20 0.44 -131.78 -0.06 3.14 16 13 C 0.06 0.92 5.81 37.16 0.22 1.13 16 14 O -0.57 -7.64 12.80 -35.23 -0.45 -8.09 16 15 N -0.69 -10.52 3.90 -48.49 -0.19 -10.71 16 16 C 0.55 8.91 7.05 -12.32 -0.09 8.82 16 17 O -0.51 -9.49 12.50 5.33 0.07 -9.42 16 18 C 0.00 -0.03 5.92 -104.51 -0.62 -0.65 16 19 C -0.14 -1.43 9.61 -38.99 -0.37 -1.80 16 20 C 0.17 1.46 11.14 -17.52 -0.20 1.27 16 21 N -0.46 -5.03 10.35 -12.39 -0.13 -5.16 16 22 C 0.21 2.61 8.56 -156.21 -1.34 1.28 16 23 N -0.41 -4.15 7.06 31.11 0.22 -3.93 16 24 H 0.46 2.61 8.96 -190.25 -1.71 0.90 16 25 N 0.00 -0.04 13.29 60.35 0.80 0.76 16 26 N -0.21 -3.33 11.92 32.23 0.38 -2.95 16 27 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 28 C -0.14 -2.48 4.81 -26.61 -0.13 -2.61 16 29 C 0.16 3.46 5.30 -3.71 -0.02 3.44 16 30 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 32 H 0.02 0.32 7.60 -51.93 -0.39 -0.08 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.45 6.08 -51.93 -0.32 1.13 16 35 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.37 3.37 9.12 45.56 0.42 3.79 16 38 H 0.40 5.54 5.56 -40.82 -0.23 5.31 16 39 H 0.16 1.30 6.54 -52.49 -0.34 0.96 16 40 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.07 1.10 7.61 -51.93 -0.40 0.71 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 2.54 5.48 -51.93 -0.28 2.26 16 44 H 0.01 0.26 7.02 -51.93 -0.36 -0.10 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -34.21 354.61 -8.05 -42.26 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.59 Total: 7.37 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -3.57 Total: 7.00 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: 1.19 Total: -60.42 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.38 Total: -17.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.04 Total: 15.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.21 -8.05 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485020607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.584 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds