Wall clock time and date at job start Wed Apr 1 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38058 * 126.29193 * 2 1 4 4 C 1.47409 * 126.41752 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99808 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00270 * 180.02562 * 4 3 2 7 7 C 1.39712 * 120.00002 * 179.97438 * 6 4 3 8 8 N 1.30937 * 126.07843 * 0.02562 * 7 6 4 9 9 N 1.39917 * 108.86047 * 179.97438 * 8 7 6 10 10 H 0.97004 * 125.66842 * 180.02562 * 9 8 7 11 11 C 1.34170 * 108.65310 * 0.02562 * 9 8 7 12 12 C 1.38104 * 107.54135 * 359.72538 * 11 9 8 13 13 C 1.47230 * 126.45425 * 180.25514 * 12 11 9 14 14 O 1.21619 * 120.00314 * 142.70024 * 13 12 11 15 15 N 1.34781 * 119.99723 * 322.70319 * 13 12 11 16 16 C 1.46504 * 119.99682 * 184.57674 * 15 13 12 17 17 C 1.46499 * 120.00041 * 4.58016 * 15 13 12 18 18 C 1.41299 * 107.17042 * 179.97438 * 3 2 1 19 19 N 1.30455 * 108.02085 * 359.74053 * 18 3 2 20 20 N 1.34262 * 126.29609 * 179.97438 * 2 1 3 21 21 C 1.46506 * 125.75397 * 359.97438 * 20 2 1 22 22 C 1.50701 * 109.46925 * 90.00089 * 21 20 2 23 23 H 1.08000 * 120.00149 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99818 * 179.72751 * 22 21 20 25 25 N 1.31520 * 119.99750 * 0.27321 * 24 22 21 26 26 Si 1.86790 * 120.00054 * 180.27604 * 24 22 21 27 27 H 1.48498 * 109.47236 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47412 * 120.00084 * 26 24 22 29 29 H 1.48507 * 109.47084 * 239.99963 * 26 24 22 30 30 H 1.08995 * 109.47455 * 270.02205 * 1 2 3 31 31 H 1.09000 * 109.47267 * 30.02832 * 1 2 3 32 32 H 1.09006 * 109.46975 * 150.02156 * 1 2 3 33 33 H 0.97004 * 119.99754 * 359.97438 * 6 4 3 34 34 H 1.07995 * 126.23032 * 179.97438 * 11 9 8 35 35 H 1.08995 * 109.47423 * 0.02562 * 16 15 13 36 36 H 1.09003 * 109.46850 * 120.00490 * 16 15 13 37 37 H 1.09008 * 109.46805 * 239.99843 * 16 15 13 38 38 H 1.09000 * 109.47143 * 84.80501 * 17 15 13 39 39 H 1.09008 * 109.46821 * 204.79523 * 17 15 13 40 40 H 1.08996 * 109.47451 * 324.79969 * 17 15 13 41 41 H 1.08004 * 125.99078 * 179.97438 * 18 3 2 42 42 H 1.08998 * 109.46979 * 329.99976 * 21 20 2 43 43 H 1.08999 * 109.46988 * 210.00103 * 21 20 2 44 44 H 0.96997 * 119.99518 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8860 2.5202 0.0005 5 8 0.6997 2.7878 0.0006 6 7 2.8002 3.5106 -0.0001 7 6 2.3849 4.8446 -0.0001 8 7 1.1452 5.2663 0.0009 9 7 1.1434 6.6654 0.0010 10 1 0.3546 7.2300 0.0020 11 6 2.4141 7.0962 -0.0004 12 6 3.2311 5.9828 0.0048 13 6 4.7033 5.9781 0.0106 14 8 5.3063 5.1394 0.6527 15 7 5.3829 6.9032 -0.6957 16 6 6.8446 6.8386 -0.7716 17 6 4.6601 7.9733 -1.3874 18 6 3.6592 0.6499 0.0006 19 7 3.6341 -0.6544 0.0066 20 7 2.3018 -1.0821 0.0005 21 6 1.8503 -2.4759 0.0016 22 6 1.6950 -2.9547 -1.4188 23 1 1.9106 -2.2875 -2.2402 24 6 1.2825 -4.2462 -1.6697 25 7 1.0195 -5.0585 -0.6693 26 14 1.0974 -4.8422 -3.4303 27 1 1.4513 -3.7436 -4.3646 28 1 2.0014 -5.9978 -3.6593 29 1 -0.3082 -5.2589 -3.6666 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3633 -0.8902 -0.5135 33 1 3.7464 3.2972 -0.0005 34 1 2.7388 8.1262 -0.0011 35 1 7.2006 5.9818 -0.1997 36 1 7.1500 6.7326 -1.8125 37 1 7.2706 7.7534 -0.3593 38 1 4.4695 8.7912 -0.6925 39 1 5.2606 8.3375 -2.2210 40 1 3.7125 7.5877 -1.7634 41 1 4.5451 1.2677 0.0004 42 1 0.8918 -2.5468 0.5159 43 1 2.5851 -3.0954 0.5157 44 1 0.7290 -5.9670 -0.8459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363311021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:15 Heat of formation + Delta-G solvation = 90.743140 kcal Electronic energy + Delta-G solvation = -29653.911334 eV Core-core repulsion = 25417.344696 eV Total energy + Delta-G solvation = -4236.566638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78180 -40.74528 -39.49698 -38.73391 -35.85055 -34.70543 -33.85441 -32.08558 -31.32063 -31.10995 -30.53231 -28.14366 -27.42080 -26.65494 -26.49431 -23.82593 -23.08593 -22.47497 -21.13887 -20.26817 -19.48086 -18.88621 -18.06429 -17.05264 -16.89670 -16.73262 -16.26213 -16.15841 -15.86727 -15.29934 -15.13808 -14.62159 -14.43046 -14.04907 -13.94685 -13.82052 -13.73549 -13.21257 -13.05706 -12.98549 -12.68344 -12.55289 -12.47550 -12.35411 -12.04453 -11.75814 -11.45836 -11.16420 -11.05741 -11.01605 -10.89885 -10.35535 -10.22690 -10.10909 -9.89205 -9.42261 -9.13927 -9.03767 -8.69835 -8.58097 -8.54347 -7.91115 -6.31906 -4.39646 1.27855 1.84939 2.30015 2.37639 2.65147 2.81312 3.05420 3.17923 3.18648 3.26669 3.32555 3.50778 3.96953 4.23400 4.26231 4.44138 4.66998 4.70808 4.86623 5.01953 5.05341 5.12985 5.16295 5.19572 5.22740 5.27237 5.49920 5.55063 5.64555 5.78444 5.96090 6.10444 6.12522 6.49760 6.57342 6.69532 6.78835 6.84563 6.93038 6.99813 7.11367 7.19847 7.58249 7.78166 7.79374 7.82613 7.93828 8.38731 8.51369 8.66616 9.27329 10.76347 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.017289 B = 0.002347 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.184087 B =11926.163587 C =12605.954694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 C -0.332 4.332 4 C 0.598 3.402 5 O -0.507 6.507 6 N -0.635 5.635 7 C 0.362 3.638 8 N -0.276 5.276 9 N -0.456 5.456 10 H 0.446 0.554 11 C 0.112 3.888 12 C -0.311 4.311 13 C 0.596 3.404 14 O -0.538 6.538 15 N -0.620 5.620 16 C 0.081 3.919 17 C 0.074 3.926 18 C 0.061 3.939 19 N -0.292 5.292 20 N -0.313 5.313 21 C 0.250 3.750 22 C -0.540 4.540 23 H 0.066 0.934 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.424 0.576 34 H 0.188 0.812 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.178 0.822 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 29.418 -0.345 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.034 3.966 3 C -0.348 4.348 4 C 0.389 3.611 5 O -0.379 6.379 6 N -0.286 5.286 7 C 0.103 3.897 8 N -0.107 5.107 9 N -0.161 5.161 10 H 0.291 0.709 11 C -0.042 4.042 12 C -0.329 4.329 13 C 0.385 3.615 14 O -0.415 6.415 15 N -0.354 5.354 16 C -0.061 4.061 17 C -0.070 4.070 18 C -0.126 4.126 19 N -0.112 5.112 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.578 4.578 23 H 0.085 0.915 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.206 1.206 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.263 0.737 34 H 0.205 0.795 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.195 0.805 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.004 27.204 0.052 27.498 hybrid contribution 0.562 0.957 -0.966 1.471 sum 4.565 28.161 -0.914 28.544 Atomic orbital electron populations 1.20636 0.86703 1.04948 1.03405 1.21445 0.94967 0.86376 0.93847 1.19458 0.93427 0.91592 1.30300 1.17537 0.84980 0.83806 0.74766 1.90786 1.15865 1.83479 1.47816 1.42937 1.11671 1.00549 1.73396 1.19054 0.90073 0.85298 0.95321 1.78052 1.16276 0.86675 1.29657 1.46099 1.06938 1.06166 1.56926 0.70878 1.23158 0.84794 0.99279 0.96966 1.19790 0.93630 0.91789 1.27692 1.17287 0.85600 0.80490 0.78083 1.90789 1.69869 1.38555 1.42300 1.47519 1.07402 1.28869 1.51592 1.21702 0.78828 1.03422 1.02198 1.21998 0.98276 0.89709 0.96983 1.23805 0.96332 0.92677 0.99811 1.77164 0.98507 1.12151 1.23373 1.49400 1.02507 1.08299 1.48756 1.19879 0.96486 0.70833 0.99483 1.21301 1.47430 0.98048 0.91031 0.91550 1.24930 0.94469 0.95997 0.98305 1.69928 1.44612 1.07094 1.31034 0.86266 0.77933 0.78854 0.83459 1.19506 1.20570 1.20564 0.90352 0.88585 0.89758 0.73713 0.79524 0.89199 0.92148 0.92327 0.92577 0.90742 0.90512 0.80493 0.92490 0.92391 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.34 36.01 0.34 -1.50 16 2 C 0.17 3.61 7.01 -81.60 -0.57 3.04 16 3 C -0.33 -6.46 6.13 -105.07 -0.64 -7.11 16 4 C 0.60 11.04 7.78 -12.53 -0.10 10.94 16 5 O -0.51 -10.34 13.56 5.27 0.07 -10.27 16 6 N -0.63 -9.97 5.42 -11.91 -0.06 -10.04 16 7 C 0.36 5.28 7.79 -154.51 -1.20 4.08 16 8 N -0.28 -4.01 10.86 31.60 0.34 -3.66 16 9 N -0.46 -3.80 7.27 30.84 0.22 -3.58 16 10 H 0.45 1.98 8.96 -182.73 -1.64 0.34 16 11 C 0.11 0.77 9.73 -16.58 -0.16 0.60 16 12 C -0.31 -3.44 5.40 -104.92 -0.57 -4.00 16 13 C 0.60 6.75 7.50 -12.61 -0.09 6.66 16 14 O -0.54 -7.87 15.53 5.26 0.08 -7.79 16 15 N -0.62 -4.79 3.27 -190.87 -0.62 -5.42 16 16 C 0.08 0.52 10.66 59.85 0.64 1.16 16 17 C 0.07 0.28 9.07 59.85 0.54 0.82 16 18 C 0.06 1.14 11.50 -16.97 -0.20 0.95 16 19 N -0.29 -6.52 12.50 30.87 0.39 -6.14 16 20 N -0.31 -7.26 3.56 -57.77 -0.21 -7.47 16 21 C 0.25 6.32 5.78 -5.19 -0.03 6.29 16 22 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 23 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 24 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 25 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 26 Si 0.91 21.01 29.54 -169.99 -5.02 15.98 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.10 1.76 6.50 -51.93 -0.34 1.42 16 32 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 33 H 0.42 6.06 6.78 -40.82 -0.28 5.78 16 34 H 0.19 0.36 6.25 -52.49 -0.33 0.03 16 35 H 0.09 0.75 6.91 -51.93 -0.36 0.40 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 38 H 0.06 0.10 7.32 -51.93 -0.38 -0.28 16 39 H 0.07 0.18 8.03 -51.92 -0.42 -0.24 16 40 H 0.08 0.31 5.89 -51.93 -0.31 0.00 16 41 H 0.18 2.56 7.50 -52.48 -0.39 2.16 16 42 H 0.06 1.42 7.62 -51.93 -0.40 1.03 16 43 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -36.85 376.80 -7.33 -44.18 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.47 Total: 3.94 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -2.47 Total: 8.63 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.79 Total: -60.35 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.15 Total: -18.06 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.85 -7.33 -44.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363311021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.921 kcal (2) G-P(sol) polarization free energy of solvation -36.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds