Wall clock time and date at job start Wed Apr 1 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46895 * 109.46746 * 229.95129 * 3 2 1 5 5 C 1.46905 * 110.99606 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47116 * 37.52675 * 5 4 3 7 7 C 1.53007 * 109.46948 * 157.52278 * 5 4 3 8 8 N 1.46501 * 109.46905 * 305.83239 * 7 5 4 9 9 C 1.34777 * 119.99681 * 180.02562 * 8 7 5 10 10 O 1.21283 * 120.00032 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99961 * 180.02562 * 9 8 7 12 12 S 1.81001 * 109.47179 * 179.97438 * 11 9 8 13 13 C 1.76202 * 99.99827 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00241 * 359.97438 * 13 12 11 15 15 C 1.38808 * 119.99829 * 179.97438 * 13 12 11 16 16 N 1.31626 * 119.99740 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00140 * 180.02562 * 15 13 12 18 18 H 1.48511 * 109.47095 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47434 * 119.99748 * 17 15 13 20 20 H 1.48497 * 109.47280 * 240.00263 * 17 15 13 21 21 C 1.50694 * 109.47479 * 277.52222 * 5 4 3 22 22 C 1.38260 * 119.99730 * 319.98143 * 21 5 4 23 23 C 1.38214 * 119.99559 * 180.22635 * 22 21 5 24 24 C 1.38258 * 120.00307 * 359.81908 * 23 22 21 25 25 C 1.38218 * 119.99867 * 359.97438 * 24 23 22 26 26 C 1.38216 * 120.00236 * 139.79200 * 21 5 4 27 27 C 1.50697 * 119.99730 * 359.97438 * 26 21 5 28 28 C 1.52994 * 109.47268 * 81.78177 * 27 26 21 29 29 H 4.40880 * 5.52157 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46967 * 109.94728 * 3 2 1 31 31 H 1.08996 * 109.47057 * 349.95278 * 3 2 1 32 32 H 1.00901 * 111.00228 * 56.04951 * 4 3 2 33 33 H 1.08991 * 109.47291 * 65.83061 * 7 5 4 34 34 H 1.09004 * 109.46885 * 185.83539 * 7 5 4 35 35 H 0.96998 * 120.00172 * 359.97438 * 8 7 5 36 36 H 1.09006 * 109.46973 * 299.99173 * 11 9 8 37 37 H 1.09002 * 109.47513 * 59.99134 * 11 9 8 38 38 H 0.97005 * 120.00087 * 179.97438 * 16 15 13 39 39 H 1.07995 * 120.00228 * 0.02562 * 22 21 5 40 40 H 1.07999 * 119.99852 * 179.78907 * 23 22 21 41 41 H 1.08005 * 120.00109 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99904 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47405 * 321.77685 * 27 26 21 44 44 H 1.09002 * 109.47242 * 201.78189 * 27 26 21 45 45 H 1.08997 * 109.47389 * 52.65947 * 28 27 26 46 46 H 1.08999 * 109.47519 * 172.66235 * 28 27 26 47 47 H 1.09007 * 109.46724 * 292.66317 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1352 0.8920 1.0602 5 6 4.6037 0.9174 1.0906 6 1 4.9890 0.8785 0.0716 7 6 5.0776 2.2059 1.7661 8 7 4.4717 3.3596 1.0967 9 6 4.7475 4.6078 1.5236 10 8 5.4969 4.7760 2.4622 11 6 4.1238 5.7946 0.8353 12 16 4.6845 7.3188 1.6344 13 6 3.8280 8.5092 0.6575 14 1 3.1915 8.1857 -0.1528 15 6 3.9714 9.8628 0.9295 16 7 4.7468 10.2570 1.9174 17 14 3.0630 11.1248 -0.1055 18 1 2.2625 10.4288 -1.1449 19 1 2.1604 11.9211 0.7642 20 1 4.0441 12.0276 -0.7593 21 6 5.1108 -0.2716 1.8651 22 6 4.4597 -0.6758 3.0159 23 6 4.9276 -1.7635 3.7288 24 6 6.0445 -2.4496 3.2892 25 6 6.6929 -2.0481 2.1365 26 6 6.2245 -0.9605 1.4230 27 6 6.9313 -0.5229 0.1661 28 6 7.8729 0.6391 0.4887 29 1 -1.0501 -0.0003 -0.0001 30 1 3.0092 0.3514 -0.9660 31 1 3.0098 -1.0110 0.1793 32 1 2.7598 0.6259 1.9582 33 1 4.7804 2.1969 2.8147 34 1 6.1633 2.2744 1.6967 35 1 3.8726 3.2251 0.3457 36 1 4.4203 5.8035 -0.2136 37 1 3.0382 5.7261 0.9054 38 1 4.8474 11.2030 2.1072 39 1 3.5874 -0.1396 3.3594 40 1 4.4210 -2.0772 4.6296 41 1 6.4104 -3.2993 3.8466 42 1 7.5656 -2.5838 1.7933 43 1 6.1958 -0.2006 -0.5710 44 1 7.5073 -1.3564 -0.2359 45 1 8.5241 0.3599 1.3170 46 1 8.4785 0.8701 -0.3877 47 1 7.2869 1.5152 0.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501019727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:10 Heat of formation + Delta-G solvation = 39.824536 kcal Electronic energy + Delta-G solvation = -27054.273798 eV Core-core repulsion = 23329.499627 eV Total energy + Delta-G solvation = -3724.774171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.59291 -38.92591 -37.19619 -34.85307 -34.27349 -33.06226 -32.37930 -31.12052 -29.91417 -29.64370 -27.80003 -25.60241 -25.34025 -24.20906 -23.63124 -21.46602 -20.71008 -20.11303 -18.65190 -17.76859 -17.23785 -16.61582 -16.18967 -15.97907 -15.50833 -15.29311 -15.09269 -14.76207 -14.62074 -14.41890 -14.23661 -13.94232 -13.83613 -13.51813 -13.42478 -13.24050 -12.99101 -12.65827 -12.51874 -12.24052 -12.10628 -11.86859 -11.75701 -11.50816 -11.09019 -11.03483 -10.96514 -10.88640 -10.77147 -10.71619 -10.55413 -9.75461 -9.34694 -9.16130 -9.02983 -8.99084 -8.91476 -8.67991 -8.16025 -6.43492 -6.17059 -3.86491 0.94958 1.03219 2.42209 2.58384 3.11641 3.23261 3.25063 3.31114 3.34750 3.42394 3.78060 3.86448 4.19934 4.25330 4.32975 4.41903 4.52784 4.57364 4.75976 4.80858 4.93282 5.05413 5.07608 5.12498 5.14601 5.18084 5.21217 5.23977 5.30619 5.49017 5.60691 5.65944 5.67279 5.68650 5.72477 5.75141 5.87213 6.00091 6.07031 6.13569 6.16998 6.21524 6.24636 6.53690 6.63735 6.74454 6.91791 7.35097 7.64902 7.91733 8.40555 8.76481 9.28464 10.90446 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.002332 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.252356 B =12005.731676 C =13183.289243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.189 4.189 3 C 0.167 3.833 4 N -0.673 5.673 5 C 0.113 3.887 6 H 0.101 0.899 7 C 0.137 3.863 8 N -0.725 5.725 9 C 0.530 3.470 10 O -0.523 6.523 11 C -0.151 4.151 12 S -0.062 6.062 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.067 4.067 27 C -0.089 4.089 28 C -0.157 4.157 29 H 0.217 0.783 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.349 0.651 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.267 0.733 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 -29.938 -3.537 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.189 4.189 3 C 0.039 3.961 4 N -0.305 5.305 5 C 0.003 3.997 6 H 0.119 0.881 7 C 0.012 3.988 8 N -0.380 5.380 9 C 0.316 3.684 10 O -0.398 6.398 11 C -0.302 4.302 12 S 0.165 5.835 13 C -0.681 4.681 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.504 5.504 17 Si 0.745 3.255 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.135 4.135 26 C -0.068 4.068 27 C -0.126 4.126 28 C -0.214 4.214 29 H 0.234 0.766 30 H 0.114 0.886 31 H 0.074 0.926 32 H 0.170 0.830 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.516 -28.923 -2.257 29.015 hybrid contribution -1.793 -0.426 -1.534 2.398 sum -1.277 -29.349 -3.791 29.620 Atomic orbital electron populations 1.24951 0.95970 1.00478 0.99414 1.22816 0.94184 1.00550 1.01371 1.18860 0.84769 0.95723 0.96714 1.60673 1.06462 1.54107 1.09266 1.20920 0.87186 0.91745 0.99867 0.88114 1.21304 0.97794 0.83017 0.96718 1.45791 1.50577 1.04735 1.36857 1.20279 0.80971 0.83504 0.83602 1.90696 1.35785 1.85449 1.27906 1.23507 1.03759 0.99168 1.03741 1.85375 1.62478 0.91657 1.44039 1.22919 1.32837 0.92930 1.19413 0.90916 1.24993 0.95412 0.97724 0.95544 1.70033 1.36061 1.16222 1.28050 0.86125 0.79248 0.80461 0.79709 1.19625 1.20608 1.20617 1.20284 0.96697 0.97680 0.96845 1.20942 1.00085 0.97142 0.94691 1.21103 0.96973 0.95897 0.99857 1.21169 0.95830 0.99824 0.96524 1.21052 0.99929 0.96958 0.95531 1.19777 0.94881 0.95087 0.97055 1.20621 0.98431 0.99223 0.94318 1.21945 0.99451 0.98029 1.02019 0.76581 0.88575 0.92631 0.82974 0.91677 0.90611 0.76136 0.89383 0.89258 0.92308 0.86001 0.85983 0.86067 0.86013 0.90790 0.90973 0.92351 0.92052 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.19 -1.75 13.60 -37.12 -0.50 -2.26 16 3 C 0.17 1.29 5.96 -6.61 -0.04 1.25 16 4 N -0.67 -5.71 5.59 -111.04 -0.62 -6.33 16 5 C 0.11 0.96 1.79 -68.86 -0.12 0.84 16 6 H 0.10 0.77 5.46 -51.93 -0.28 0.49 16 7 C 0.14 1.63 5.23 -4.04 -0.02 1.61 16 8 N -0.72 -10.05 5.38 -60.29 -0.32 -10.37 16 9 C 0.53 10.18 7.85 -10.99 -0.09 10.09 16 10 O -0.52 -12.15 15.86 5.55 0.09 -12.06 16 11 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 12 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 13 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 14 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.50 13.22 55.49 0.73 -25.76 16 17 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.11 -0.95 4.59 -104.63 -0.48 -1.43 16 22 C -0.11 -0.92 9.14 -39.58 -0.36 -1.28 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 25 C -0.12 -0.88 9.67 -39.58 -0.38 -1.26 16 26 C -0.07 -0.54 5.13 -104.63 -0.54 -1.07 16 27 C -0.09 -0.60 5.45 -27.89 -0.15 -0.75 16 28 C -0.16 -1.25 9.85 37.15 0.37 -0.88 16 29 H 0.22 1.17 7.80 -54.08 -0.42 0.75 16 30 H 0.10 0.65 8.06 -51.93 -0.42 0.24 16 31 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 32 H 0.35 2.98 6.40 -39.29 -0.25 2.73 16 33 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 34 H 0.08 0.96 5.46 -51.93 -0.28 0.68 16 35 H 0.40 4.79 8.11 -40.82 -0.33 4.45 16 36 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 0.93 6.50 -52.49 -0.34 0.59 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.12 0.71 8.05 -52.49 -0.42 0.29 16 43 H 0.07 0.46 6.31 -51.93 -0.33 0.13 16 44 H 0.07 0.41 8.03 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.63 4.90 -51.93 -0.25 0.37 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -35.31 406.15 -10.03 -45.35 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.67 Total: 5.14 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -2.13 Total: -14.81 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.21 Total: -42.47 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.31 -10.03 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501019727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.171 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds