Wall clock time and date at job start Wed Apr 1 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33636 * 125.67481 * 2 1 4 4 C 1.34561 * 110.87696 * 179.97438 * 3 2 1 5 5 C 1.47936 * 125.58333 * 179.97438 * 4 3 2 6 6 N 1.34193 * 126.70273 * 180.02562 * 5 4 3 7 7 N 1.28983 * 107.25473 * 179.97438 * 6 5 4 8 8 N 1.28725 * 108.98905 * 359.97438 * 7 6 5 9 9 H 0.96995 * 125.31329 * 180.02562 * 8 7 6 10 10 N 1.28869 * 109.36328 * 0.02562 * 8 7 6 11 11 C 1.35556 * 108.83629 * 0.23296 * 4 3 2 12 12 C 1.36566 * 125.66869 * 179.97438 * 2 1 3 13 13 C 1.47429 * 127.11236 * 0.03165 * 12 2 1 14 14 O 1.21605 * 120.00222 * 29.60024 * 13 12 2 15 15 N 1.34775 * 119.99868 * 209.59791 * 13 12 2 16 16 C 1.47081 * 120.88100 * 3.93514 * 15 13 12 17 17 C 1.53693 * 108.27532 * 128.75831 * 16 15 13 18 18 N 1.46897 * 109.26176 * 54.08145 * 17 16 15 19 19 C 1.46904 * 111.00019 * 172.61125 * 18 17 16 20 20 C 1.50700 * 109.47141 * 59.83909 * 19 18 17 21 21 H 1.08000 * 120.00334 * 355.35157 * 20 19 18 22 22 C 1.37880 * 119.99496 * 175.35130 * 20 19 18 23 23 N 1.31513 * 120.00333 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99632 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47283 * 89.99892 * 24 22 20 26 26 H 1.48508 * 109.46949 * 209.99701 * 24 22 20 27 27 H 1.48503 * 109.47190 * 329.99563 * 24 22 20 28 28 C 1.46897 * 111.26608 * 296.75629 * 18 17 16 29 29 C 1.47084 * 120.88227 * 184.21235 * 15 13 12 30 30 H 1.08994 * 109.47005 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46958 * 120.02631 * 1 2 3 32 32 H 1.08997 * 109.47061 * 240.02358 * 1 2 3 33 33 H 1.08003 * 127.07256 * 179.77373 * 11 4 3 34 34 H 1.09003 * 109.62593 * 248.51994 * 16 15 13 35 35 H 1.08991 * 109.63119 * 9.10229 * 16 15 13 36 36 H 1.09002 * 109.64747 * 294.07459 * 17 16 15 37 37 H 1.09002 * 109.42387 * 173.94892 * 17 16 15 38 38 H 1.09002 * 109.46924 * 179.84257 * 19 18 17 39 39 H 1.09000 * 109.47095 * 299.83596 * 19 18 17 40 40 H 0.96999 * 120.00326 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.49787 * 303.14402 * 28 18 17 42 42 H 1.08999 * 109.51493 * 183.07480 * 28 18 17 43 43 H 1.08998 * 109.62721 * 350.89947 * 29 15 13 44 44 H 1.09004 * 109.62861 * 111.47611 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2864 1.0856 0.0000 4 6 3.5874 0.7419 0.0006 5 6 4.7269 1.6853 0.0002 6 7 6.0308 1.3679 0.0003 7 7 6.6938 2.4743 -0.0007 8 7 5.8651 3.4593 -0.0019 9 1 6.1097 4.3979 -0.0031 10 7 4.6597 3.0034 -0.0012 11 6 3.6828 -0.6103 -0.0043 12 6 2.3034 -1.1095 0.0005 13 6 1.8669 -2.5177 0.0005 14 8 0.8125 -2.8275 -0.5201 15 7 2.6366 -3.4617 0.5774 16 6 3.8725 -3.0981 1.2872 17 6 3.8378 -3.7481 2.6794 18 7 3.6071 -5.1916 2.5347 19 6 3.7407 -5.8782 3.8265 20 6 2.7336 -5.3198 4.7986 21 1 2.1130 -4.4835 4.5126 22 6 2.6045 -5.8767 6.0534 23 7 3.3598 -6.8954 6.4016 24 14 1.3558 -5.1850 7.2581 25 1 0.0590 -5.8875 7.0849 26 1 1.8447 -5.3835 8.6463 27 1 1.1710 -3.7341 7.0012 28 6 2.2978 -5.4636 1.9268 29 6 2.2662 -4.8835 0.5089 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5142 -0.8898 32 1 -0.3633 -0.5135 0.8902 33 1 4.5883 -1.1990 -0.0086 34 1 4.7354 -3.4636 0.7305 35 1 3.9310 -2.0145 1.3888 36 1 3.0333 -3.3085 3.2692 37 1 4.7906 -3.5806 3.1815 38 1 3.5622 -6.9450 3.6911 39 1 4.7466 -5.7249 4.2172 40 1 3.2693 -7.2870 7.2844 41 1 1.5147 -5.0002 2.5269 42 1 2.1333 -6.5403 1.8830 43 1 1.2622 -4.9807 0.0957 44 1 2.9777 -5.4173 -0.1212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606166399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:03 Heat of formation + Delta-G solvation = 128.115880 kcal Electronic energy + Delta-G solvation = -30244.932687 eV Core-core repulsion = 26009.986653 eV Total energy + Delta-G solvation = -4234.946034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.89110 -42.91262 -39.71658 -37.45123 -34.98522 -34.51653 -33.98756 -33.41252 -32.30907 -31.81840 -30.57449 -28.43329 -27.53727 -25.55136 -25.03201 -24.08258 -23.55927 -23.05000 -21.98522 -21.37488 -20.01389 -19.64597 -18.59959 -17.67233 -17.54520 -16.67974 -16.38336 -16.20537 -15.84174 -15.00533 -14.85365 -14.76053 -14.49462 -14.38574 -13.86037 -13.63892 -13.40210 -13.30533 -13.22174 -13.16973 -12.75957 -12.64936 -12.14407 -11.99431 -11.85500 -11.84847 -11.56653 -11.52853 -11.14861 -11.07959 -10.99739 -10.68664 -10.58735 -10.26457 -10.01336 -9.93892 -9.74121 -9.55916 -8.71726 -8.46882 -8.38309 -7.25801 -6.06798 -4.16171 0.43748 0.86879 1.38717 1.65010 2.11686 2.30913 3.05617 3.21713 3.24981 3.32136 3.34814 3.43922 3.93341 4.36437 4.37548 4.48378 4.67009 4.89816 4.93250 4.98526 5.20761 5.23606 5.31242 5.33889 5.36685 5.42461 5.52287 5.67018 5.76550 5.79924 5.88197 5.92508 5.95519 6.03125 6.12459 6.42901 6.61695 6.63198 6.72785 6.77617 7.20658 7.47690 7.58228 7.68781 7.85351 7.96688 8.18516 8.24183 8.29104 8.93733 9.51224 10.98321 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.002888 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.806347 B = 9691.301315 C =10466.593019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.100 3.900 3 O -0.158 6.158 4 C 0.043 3.957 5 C 0.257 3.743 6 N -0.249 5.249 7 N -0.040 5.040 8 N -0.224 5.224 9 H 0.478 0.522 10 N -0.283 5.283 11 C -0.103 4.103 12 C -0.236 4.236 13 C 0.590 3.410 14 O -0.547 6.547 15 N -0.595 5.595 16 C 0.096 3.904 17 C 0.050 3.950 18 N -0.540 5.540 19 C 0.188 3.812 20 C -0.551 4.551 21 H 0.056 0.944 22 C 0.066 3.934 23 N -0.890 5.890 24 Si 0.888 3.112 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.050 3.950 29 C 0.116 3.884 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.177 0.823 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 19.390 -14.826 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.045 3.955 3 O -0.053 6.053 4 C -0.008 4.008 5 C -0.023 4.023 6 N -0.123 5.123 7 N -0.035 5.035 8 N -0.070 5.070 9 H 0.333 0.667 10 N -0.135 5.135 11 C -0.126 4.126 12 C -0.240 4.240 13 C 0.379 3.621 14 O -0.426 6.426 15 N -0.327 5.327 16 C -0.026 4.026 17 C -0.080 4.080 18 N -0.265 5.265 19 C 0.062 3.938 20 C -0.590 4.590 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.716 3.284 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.079 4.079 29 C -0.006 4.006 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.194 0.806 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.174 19.360 -15.251 24.741 hybrid contribution -1.313 1.069 1.567 2.307 sum 0.861 20.429 -13.684 24.604 Atomic orbital electron populations 1.20591 0.82999 1.04178 1.05717 1.22923 0.94021 0.82338 0.96226 1.83732 1.15030 1.34823 1.71706 1.17447 0.79678 0.89804 1.13852 1.21840 0.90735 0.86744 1.02935 1.76200 1.01117 1.17490 1.17533 1.78987 1.19871 0.90191 1.14452 1.47709 1.00900 1.12676 1.45731 0.66704 1.75156 1.05160 1.11703 1.21497 1.23119 0.97671 0.91736 1.00070 1.21133 0.92499 0.94562 1.15806 1.17090 0.83408 0.83350 0.78285 1.90752 1.22999 1.81910 1.46989 1.47982 1.24470 1.07221 1.53014 1.22530 0.85956 1.00315 0.93824 1.22326 1.01858 0.90148 0.93649 1.62496 1.28269 1.08104 1.27600 1.19765 0.96676 0.94431 0.82891 1.21740 1.21296 1.16713 0.99295 0.92599 1.24950 0.95778 0.94762 0.98179 1.69934 1.39085 1.23114 1.20679 0.86661 0.81719 0.79444 0.80600 1.20587 1.21092 1.20010 1.22238 0.92370 1.00564 0.92725 1.21882 1.01434 0.78905 0.98347 0.90074 0.87635 0.88434 0.80552 0.90721 0.89236 0.93845 0.90289 0.94647 0.95192 0.92754 0.93917 0.90287 0.89299 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.56 36.01 0.34 -0.39 16 2 C 0.10 1.19 7.36 -34.91 -0.26 0.94 16 3 O -0.16 -1.90 10.54 6.75 0.07 -1.83 16 4 C 0.04 0.52 7.22 -36.57 -0.26 0.26 16 5 C 0.26 2.93 8.20 -156.25 -1.28 1.65 16 6 N -0.25 -2.85 12.52 32.08 0.40 -2.44 16 7 N -0.04 -0.37 13.47 60.35 0.81 0.45 16 8 N -0.22 -1.47 7.90 60.35 0.48 -0.99 16 9 H 0.48 0.69 8.96 -340.34 -3.05 -2.36 16 10 N -0.28 -2.75 12.41 32.10 0.40 -2.35 16 11 C -0.10 -1.23 8.57 -37.12 -0.32 -1.55 16 12 C -0.24 -3.16 5.67 -103.34 -0.59 -3.75 16 13 C 0.59 9.27 7.57 -12.52 -0.09 9.17 16 14 O -0.55 -9.64 15.51 5.27 0.08 -9.56 16 15 N -0.59 -9.30 3.00 -173.45 -0.52 -9.82 16 16 C 0.10 1.40 5.49 -3.37 -0.02 1.38 16 17 C 0.05 0.91 5.18 -3.47 -0.02 0.89 16 18 N -0.54 -11.01 4.83 -235.47 -1.14 -12.15 16 19 C 0.19 4.66 5.11 -4.97 -0.03 4.64 16 20 C -0.55 -14.81 7.76 -34.44 -0.27 -15.08 16 21 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 C 0.05 0.95 5.24 -3.70 -0.02 0.93 16 29 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.18 1.86 6.65 -52.48 -0.35 1.51 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.16 4.20 -51.93 -0.22 0.94 16 36 H 0.04 0.89 6.64 -51.93 -0.34 0.55 16 37 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 38 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.04 0.91 7.08 -51.93 -0.37 0.54 16 42 H 0.08 1.47 8.06 -51.93 -0.42 1.06 16 43 H 0.09 1.41 7.04 -51.93 -0.37 1.04 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -33.37 366.92 -9.02 -42.39 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.92 Total: -3.08 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.93 Total: 2.65 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 1.17 Total: -52.34 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.15 Total: -11.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.37 -9.02 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606166399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.504 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds