Wall clock time and date at job start Wed Apr 1 2020 03:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33636 * 125.67481 * 2 1 4 4 C 1.34561 * 110.87696 * 179.97438 * 3 2 1 5 5 C 1.47936 * 125.58333 * 179.97438 * 4 3 2 6 6 N 1.34193 * 126.70273 * 180.02562 * 5 4 3 7 7 N 1.28983 * 107.25473 * 179.97438 * 6 5 4 8 8 N 1.28725 * 108.98905 * 359.97438 * 7 6 5 9 9 H 0.96995 * 125.31329 * 180.02562 * 8 7 6 10 10 N 1.28869 * 109.36328 * 0.02562 * 8 7 6 11 11 C 1.35556 * 108.83629 * 0.23296 * 4 3 2 12 12 C 1.36566 * 125.66869 * 179.97438 * 2 1 3 13 13 C 1.47429 * 127.11236 * 0.03165 * 12 2 1 14 14 O 1.21605 * 120.00222 * 29.60024 * 13 12 2 15 15 N 1.34775 * 119.99868 * 209.59791 * 13 12 2 16 16 C 1.47081 * 120.88100 * 3.93514 * 15 13 12 17 17 C 1.53693 * 108.27532 * 128.75831 * 16 15 13 18 18 N 1.46897 * 109.26176 * 54.08145 * 17 16 15 19 19 C 1.46904 * 111.00019 * 172.61125 * 18 17 16 20 20 C 1.50700 * 109.47141 * 59.83909 * 19 18 17 21 21 H 1.08000 * 120.00334 * 355.35157 * 20 19 18 22 22 C 1.37880 * 119.99496 * 175.35130 * 20 19 18 23 23 N 1.31513 * 120.00333 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99632 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47283 * 89.99892 * 24 22 20 26 26 H 1.48508 * 109.46949 * 209.99701 * 24 22 20 27 27 H 1.48503 * 109.47190 * 329.99563 * 24 22 20 28 28 C 1.46897 * 111.26608 * 296.75629 * 18 17 16 29 29 C 1.47084 * 120.88227 * 184.21235 * 15 13 12 30 30 H 1.08994 * 109.47005 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46958 * 120.02631 * 1 2 3 32 32 H 1.08997 * 109.47061 * 240.02358 * 1 2 3 33 33 H 1.08003 * 127.07256 * 179.77373 * 11 4 3 34 34 H 1.09003 * 109.62593 * 248.51994 * 16 15 13 35 35 H 1.08991 * 109.63119 * 9.10229 * 16 15 13 36 36 H 1.09002 * 109.64747 * 294.07459 * 17 16 15 37 37 H 1.09002 * 109.42387 * 173.94892 * 17 16 15 38 38 H 1.09002 * 109.46924 * 179.84257 * 19 18 17 39 39 H 1.09000 * 109.47095 * 299.83596 * 19 18 17 40 40 H 0.96999 * 120.00326 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.49787 * 303.14402 * 28 18 17 42 42 H 1.08999 * 109.51493 * 183.07480 * 28 18 17 43 43 H 1.08998 * 109.62721 * 350.89947 * 29 15 13 44 44 H 1.09004 * 109.62861 * 111.47611 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2864 1.0856 0.0000 4 6 3.5874 0.7419 0.0006 5 6 4.7269 1.6853 0.0002 6 7 6.0308 1.3679 0.0003 7 7 6.6938 2.4743 -0.0007 8 7 5.8651 3.4593 -0.0019 9 1 6.1097 4.3979 -0.0031 10 7 4.6597 3.0034 -0.0012 11 6 3.6828 -0.6103 -0.0043 12 6 2.3034 -1.1095 0.0005 13 6 1.8669 -2.5177 0.0005 14 8 0.8125 -2.8275 -0.5201 15 7 2.6366 -3.4617 0.5774 16 6 3.8725 -3.0981 1.2872 17 6 3.8378 -3.7481 2.6794 18 7 3.6071 -5.1916 2.5347 19 6 3.7407 -5.8782 3.8265 20 6 2.7336 -5.3198 4.7986 21 1 2.1130 -4.4835 4.5126 22 6 2.6045 -5.8767 6.0534 23 7 3.3598 -6.8954 6.4016 24 14 1.3558 -5.1850 7.2581 25 1 0.0590 -5.8875 7.0849 26 1 1.8447 -5.3835 8.6463 27 1 1.1710 -3.7341 7.0012 28 6 2.2978 -5.4636 1.9268 29 6 2.2662 -4.8835 0.5089 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5142 -0.8898 32 1 -0.3633 -0.5135 0.8902 33 1 4.5883 -1.1990 -0.0086 34 1 4.7354 -3.4636 0.7305 35 1 3.9310 -2.0145 1.3888 36 1 3.0333 -3.3085 3.2692 37 1 4.7906 -3.5806 3.1815 38 1 3.5622 -6.9450 3.6911 39 1 4.7466 -5.7249 4.2172 40 1 3.2693 -7.2870 7.2844 41 1 1.5147 -5.0002 2.5269 42 1 2.1333 -6.5403 1.8830 43 1 1.2622 -4.9807 0.0957 44 1 2.9777 -5.4173 -0.1212 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606166399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:02 Heat of formation + Delta-G solvation = 103.579928 kcal Electronic energy + Delta-G solvation = -30245.996646 eV Core-core repulsion = 26009.986653 eV Total energy + Delta-G solvation = -4236.009993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.61965 -43.84230 -41.01105 -38.94269 -36.11045 -35.67655 -34.77158 -34.59573 -34.10330 -32.67997 -31.92345 -30.00869 -28.56810 -27.23479 -25.81706 -25.17905 -24.83797 -24.27437 -23.44163 -22.49113 -21.35005 -20.47234 -19.66726 -18.83046 -18.41137 -18.20680 -17.65915 -17.37919 -16.93133 -16.70634 -16.22237 -15.98048 -15.82223 -15.49419 -15.29604 -15.11325 -14.62111 -14.44434 -14.35337 -14.03898 -13.95842 -13.55773 -13.53346 -13.47208 -12.96599 -12.90747 -12.87840 -12.59366 -12.53621 -12.45561 -12.33243 -12.29298 -12.18872 -11.93719 -11.81652 -11.61577 -11.14743 -10.76049 -10.60843 -9.79819 -9.53594 -9.03740 -8.17010 -6.36054 -0.35036 0.08757 0.39474 0.93192 1.34625 1.35765 1.43298 1.45337 1.45419 1.86100 2.11992 2.35554 2.57320 3.08234 3.14116 3.31854 3.42832 3.51322 3.75226 4.00379 4.06467 4.11943 4.19641 4.30611 4.37487 4.42640 4.50112 4.55276 4.58182 4.61562 4.68062 4.78571 4.91231 4.96557 5.06815 5.13485 5.19021 5.23135 5.33125 5.47306 5.50364 5.72810 5.74640 6.00714 6.17686 6.40126 6.46795 6.84257 6.94799 7.06456 7.35437 8.85291 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.002888 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.806347 B = 9691.301315 C =10466.593019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.108 3.892 3 O -0.158 6.158 4 C 0.041 3.959 5 C 0.242 3.758 6 N -0.270 5.270 7 N -0.042 5.042 8 N -0.192 5.192 9 H 0.498 0.502 10 N -0.286 5.286 11 C -0.102 4.102 12 C -0.259 4.259 13 C 0.591 3.409 14 O -0.570 6.570 15 N -0.601 5.601 16 C 0.109 3.891 17 C 0.050 3.950 18 N -0.535 5.535 19 C 0.201 3.799 20 C -0.557 4.557 21 H 0.051 0.949 22 C 0.015 3.985 23 N -0.923 5.923 24 Si 0.952 3.048 25 H -0.275 1.275 26 H -0.279 1.279 27 H -0.271 1.271 28 C 0.055 3.945 29 C 0.127 3.873 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.017 0.983 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.015 0.985 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 21.659 -15.583 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.053 3.947 3 O -0.053 6.053 4 C -0.010 4.010 5 C -0.037 4.037 6 N -0.144 5.144 7 N -0.037 5.037 8 N -0.044 5.044 9 H 0.358 0.642 10 N -0.139 5.139 11 C -0.124 4.124 12 C -0.264 4.264 13 C 0.381 3.619 14 O -0.451 6.451 15 N -0.332 5.332 16 C -0.013 4.013 17 C -0.079 4.079 18 N -0.259 5.259 19 C 0.074 3.926 20 C -0.596 4.596 21 H 0.069 0.931 22 C -0.185 4.185 23 N -0.563 5.563 24 Si 0.777 3.223 25 H -0.201 1.201 26 H -0.204 1.204 27 H -0.196 1.196 28 C -0.075 4.075 29 C 0.005 3.995 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.207 0.793 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.035 0.965 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.137 21.664 -16.023 27.030 hybrid contribution -1.263 0.475 1.769 2.225 sum 0.874 22.138 -14.255 26.345 Atomic orbital electron populations 1.20704 0.81383 1.05921 1.05484 1.23340 0.94921 0.81956 0.94523 1.83749 1.15206 1.34773 1.71576 1.17587 0.79778 0.90079 1.13593 1.21804 0.90632 0.87189 1.04063 1.76188 1.01209 1.18498 1.18465 1.78934 1.19866 0.90304 1.14619 1.47767 0.99798 1.13473 1.43313 0.64172 1.75114 1.06245 1.11163 1.21374 1.23190 0.97403 0.91877 0.99959 1.21010 0.93669 0.93640 1.18043 1.17340 0.82850 0.84072 0.77599 1.90732 1.23955 1.82440 1.48017 1.48050 1.24862 1.07088 1.53216 1.22514 0.86271 1.01121 0.91396 1.22377 1.00851 0.88618 0.96060 1.62436 1.29121 1.09322 1.24995 1.19430 0.95036 0.93419 0.84694 1.21957 1.21361 1.16405 0.99855 0.93087 1.25741 0.97622 0.95087 1.00005 1.70042 1.40621 1.24309 1.21288 0.85652 0.79360 0.78820 0.78443 1.20068 1.20431 1.19558 1.22222 0.90555 1.00530 0.94148 1.21736 1.02270 0.79385 0.96117 0.87410 0.87656 0.88666 0.79326 0.88549 0.87324 0.96461 0.90144 0.97134 0.97195 0.92548 0.96672 0.90504 0.89077 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.56 71.24 0.68 -0.68 16 2 C 0.11 2.42 7.36 25.30 0.19 2.61 16 3 O -0.16 -3.54 10.54 1.24 0.01 -3.53 16 4 C 0.04 0.91 7.22 24.22 0.17 1.09 16 5 C 0.24 5.12 8.20 137.12 1.12 6.24 16 6 N -0.27 -5.73 12.52 -52.40 -0.66 -6.38 16 7 N -0.04 -0.70 13.47 37.02 0.50 -0.20 16 8 N -0.19 -2.07 7.90 37.02 0.29 -1.78 16 9 H 0.50 0.09 8.96 -347.52 -3.11 -3.03 16 10 N -0.29 -4.95 12.41 -52.35 -0.65 -5.60 16 11 C -0.10 -2.26 8.57 23.86 0.20 -2.06 16 12 C -0.26 -6.61 5.67 -19.03 -0.11 -6.72 16 13 C 0.59 17.97 7.57 86.66 0.66 18.63 16 14 O -0.57 -19.71 15.51 -4.05 -0.06 -19.77 16 15 N -0.60 -18.11 3.00 -820.92 -2.47 -20.57 16 16 C 0.11 3.00 5.49 86.50 0.48 3.48 16 17 C 0.05 1.83 5.18 86.54 0.45 2.28 16 18 N -0.54 -22.06 4.83 -898.89 -4.34 -26.40 16 19 C 0.20 10.29 5.11 85.56 0.44 10.73 16 20 C -0.56 -30.55 7.76 25.60 0.20 -30.35 16 21 H 0.05 2.81 5.88 -2.91 -0.02 2.79 16 22 C 0.02 0.85 5.46 84.66 0.46 1.31 16 23 N -0.92 -54.33 13.29 21.45 0.28 -54.04 16 24 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.05 2.09 5.24 86.38 0.45 2.54 16 29 C 0.13 3.95 6.61 86.35 0.57 4.52 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.11 1.86 7.89 -2.39 -0.02 1.84 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.19 3.58 6.65 -2.91 -0.02 3.57 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.11 2.63 4.20 -2.39 -0.01 2.62 16 36 H 0.02 0.72 6.64 -2.39 -0.02 0.70 16 37 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 38 H 0.01 0.58 8.08 -2.39 -0.02 0.57 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.01 0.66 7.08 -2.39 -0.02 0.64 16 42 H 0.08 2.93 8.06 -2.39 -0.02 2.91 16 43 H 0.09 2.83 7.04 -2.39 -0.02 2.81 16 44 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -72.18 366.92 -1.13 -73.31 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.03 Total: 5.40 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.96 Total: 13.61 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.04 Total: -114.97 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.18 -1.13 -73.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606166399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.895 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds