Wall clock time and date at job start Wed Apr 1 2020 03:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99894 * 2 1 4 4 N 1.46494 * 109.47176 * 234.99657 * 3 2 1 5 5 C 1.46507 * 120.00199 * 266.45921 * 4 3 2 6 6 C 1.50707 * 109.46952 * 89.99952 * 5 4 3 7 7 H 1.07996 * 119.99801 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99670 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99891 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00302 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47750 * 89.99660 * 10 8 6 12 12 H 1.48500 * 109.47045 * 209.99725 * 10 8 6 13 13 H 1.48500 * 109.46977 * 329.99506 * 10 8 6 14 14 C 1.34783 * 120.00322 * 86.45712 * 4 3 2 15 15 O 1.21277 * 120.00390 * 183.52092 * 14 4 3 16 16 C 1.50702 * 119.99481 * 3.52535 * 14 4 3 17 17 H 1.09006 * 110.43251 * 313.36403 * 16 14 4 18 18 C 1.54627 * 110.48398 * 190.68480 * 16 14 4 19 19 C 1.54482 * 101.76428 * 216.52104 * 18 16 14 20 20 N 1.46766 * 105.47141 * 25.41568 * 19 18 16 21 21 C 1.40028 * 124.35116 * 163.00267 * 20 19 18 22 22 C 1.38844 * 120.04847 * 173.89160 * 21 20 19 23 23 C 1.38116 * 119.95646 * 179.76953 * 22 21 20 24 24 C 1.38478 * 120.04402 * 0.50983 * 23 22 21 25 25 F 1.35098 * 119.95569 * 179.72218 * 24 23 22 26 26 C 1.38472 * 120.08764 * 359.74565 * 24 23 22 27 27 C 1.38113 * 120.04879 * 359.97438 * 26 24 23 28 28 C 1.34418 * 111.30171 * 342.98581 * 20 19 18 29 29 O 1.21293 * 124.94343 * 180.44578 * 28 20 19 30 30 H 1.08002 * 119.99927 * 359.72824 * 1 2 3 31 31 H 1.07994 * 119.99920 * 179.72437 * 1 2 3 32 32 H 1.08002 * 119.99927 * 180.27175 * 2 1 3 33 33 H 1.09002 * 109.47385 * 354.99737 * 3 2 1 34 34 H 1.09003 * 109.47126 * 114.99936 * 3 2 1 35 35 H 1.08999 * 109.46975 * 209.99778 * 5 4 3 36 36 H 1.08995 * 109.46733 * 329.99900 * 5 4 3 37 37 H 0.97000 * 120.00601 * 180.02562 * 9 8 6 38 38 H 1.08994 * 110.96993 * 334.64000 * 18 16 14 39 39 H 1.09008 * 110.97029 * 98.40618 * 18 16 14 40 40 H 1.08994 * 110.24763 * 266.41634 * 19 18 16 41 41 H 1.08999 * 110.24542 * 144.41723 * 19 18 16 42 42 H 1.08002 * 120.02353 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.97715 * 180.27252 * 23 22 21 44 44 H 1.08002 * 119.97339 * 180.02562 * 26 24 23 45 45 H 1.07996 * 120.02441 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 -1.1313 5 6 4.3813 0.8981 -0.9493 6 6 4.4856 -0.5801 -1.2237 7 1 3.6063 -1.1404 -1.5052 8 6 5.7034 -1.2172 -1.1145 9 7 5.7944 -2.5072 -1.3535 10 14 7.2239 -0.2484 -0.6257 11 1 7.3649 -0.2610 0.8525 12 1 8.4246 -0.8671 -1.2427 13 1 7.0910 1.1531 -1.0983 14 6 2.5733 1.7555 -2.3398 15 8 3.3248 1.7177 -3.2909 16 6 1.1693 2.2764 -2.5090 17 1 0.4548 1.6070 -2.0297 18 6 0.8328 2.4478 -4.0084 19 6 -0.0356 3.7253 -3.9922 20 7 0.3767 4.4639 -2.7928 21 6 0.1029 5.8182 -2.5658 22 6 0.4235 6.3972 -1.3452 23 6 0.1571 7.7344 -1.1250 24 6 -0.4391 8.4950 -2.1168 25 9 -0.7041 9.8015 -1.8975 26 6 -0.7645 7.9182 -3.3329 27 6 -0.4944 6.5827 -3.5592 28 6 1.0506 3.6730 -1.9400 29 8 1.4977 4.0274 -0.8696 30 1 -0.5400 0.9353 0.0044 31 1 -0.5400 -0.9353 -0.0045 32 1 1.8501 -0.9353 -0.0044 33 1 1.3586 2.1317 -0.0896 34 1 2.6213 1.4026 0.9314 35 1 5.0256 1.4422 -1.6398 36 1 4.6937 1.1004 0.0752 37 1 6.6510 -2.9556 -1.2763 38 1 1.7379 2.5989 -4.5965 39 1 0.2652 1.5950 -4.3808 40 1 -1.0916 3.4628 -3.9290 41 1 0.1529 4.3210 -4.8853 42 1 0.8848 5.8034 -0.5699 43 1 0.4103 8.1863 -0.1773 44 1 -1.2291 8.5132 -4.1053 45 1 -0.7487 6.1331 -4.5076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293943708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:55 Heat of formation + Delta-G solvation = -44.534420 kcal Electronic energy + Delta-G solvation = -30544.840412 eV Core-core repulsion = 26250.194986 eV Total energy + Delta-G solvation = -4294.645426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.07037 -41.62970 -39.43127 -38.28914 -36.94733 -35.73400 -33.47238 -32.88167 -32.12550 -31.48501 -29.32123 -28.64852 -27.67366 -25.60745 -23.99359 -23.51137 -22.72655 -21.40716 -20.46680 -19.81402 -18.49280 -18.07332 -17.70030 -17.43859 -16.95730 -16.72889 -16.07025 -15.82083 -15.64822 -15.14198 -14.86597 -14.72991 -14.31345 -14.19379 -14.01123 -13.91789 -13.50088 -13.34620 -13.28342 -13.19652 -12.83456 -12.69492 -12.52151 -12.44705 -12.12632 -11.83683 -11.47873 -11.45013 -11.32539 -11.05407 -10.86760 -10.47601 -10.33470 -10.12490 -9.83095 -9.57256 -9.45588 -9.31811 -9.10647 -8.60278 -8.15304 -7.80390 -6.10186 -4.08732 0.75707 0.90754 2.15785 2.38872 2.47718 3.09077 3.26926 3.34768 3.35798 3.39803 3.74693 4.02476 4.04048 4.15402 4.39051 4.47686 4.52703 4.62839 4.67801 4.86105 4.98959 4.99578 5.12630 5.16328 5.23722 5.26858 5.31866 5.43867 5.58314 5.65403 5.69944 5.77200 5.80468 5.95570 5.97756 6.03192 6.17782 6.27236 6.62102 6.65929 6.68268 6.90992 6.94918 7.00507 7.25308 7.58480 7.71477 8.13268 8.43215 8.77695 8.93048 9.50161 11.02830 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.002802 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.363576 B = 9992.231315 C =10354.500816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C 0.129 3.871 4 N -0.574 5.574 5 C 0.215 3.785 6 C -0.525 4.525 7 H 0.077 0.923 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.529 3.471 15 O -0.528 6.528 16 C -0.150 4.150 17 H 0.136 0.864 18 C -0.119 4.119 19 C 0.095 3.905 20 N -0.557 5.557 21 C 0.163 3.837 22 C -0.130 4.130 23 C -0.121 4.121 24 C 0.066 3.934 25 F -0.143 7.143 26 C -0.124 4.124 27 C -0.132 4.132 28 C 0.534 3.466 29 O -0.490 6.490 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.166 0.834 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.642 16.774 -2.945 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.166 4.166 3 C 0.006 3.994 4 N -0.303 5.303 5 C 0.095 3.905 6 C -0.564 4.564 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.313 3.687 15 O -0.405 6.405 16 C -0.175 4.175 17 H 0.153 0.847 18 C -0.156 4.156 19 C -0.027 4.027 20 N -0.281 5.281 21 C 0.069 3.931 22 C -0.150 4.150 23 C -0.141 4.141 24 C 0.046 3.954 25 F -0.122 7.122 26 C -0.144 4.144 27 C -0.152 4.152 28 C 0.322 3.678 29 O -0.364 6.364 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.183 0.817 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.814 16.805 -2.851 23.943 hybrid contribution 0.678 0.398 0.329 0.853 sum -16.136 17.203 -2.521 23.720 Atomic orbital electron populations 1.23733 0.95761 1.01227 1.04221 1.23746 0.95948 1.00558 0.96301 1.20849 0.92918 0.94922 0.90718 1.47761 1.12703 1.61857 1.08001 1.19761 0.77365 0.96644 0.96717 1.21301 0.96526 0.91280 1.47272 0.90492 1.24836 0.98579 0.94762 0.94752 1.69885 1.25534 1.08841 1.49292 0.86899 0.83176 0.81049 0.78969 1.20075 1.20959 1.18865 1.19330 0.86979 0.78831 0.83545 1.90682 1.55360 1.55907 1.38544 1.22273 1.00177 0.95510 0.99501 0.84692 1.22668 1.01915 0.96946 0.94115 1.22405 0.99801 0.93267 0.87199 1.45788 1.53164 1.07628 1.21482 1.17828 0.98128 0.82479 0.94643 1.21565 1.01221 0.94959 0.97211 1.21080 0.99724 0.93885 0.99380 1.17686 1.03266 0.78746 0.95693 1.91487 1.92187 1.33260 1.95231 1.20892 1.01947 0.95190 0.96348 1.20626 1.02400 0.93299 0.98894 1.20571 0.76435 0.87093 0.83686 1.90626 1.47155 1.77607 1.21062 0.89327 0.88506 0.85702 0.89691 0.89460 0.94149 0.95424 0.92573 0.87326 0.87974 0.89657 0.89088 0.81713 0.84284 0.84346 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.69 13.31 29.01 0.39 -2.31 16 2 C -0.15 -2.33 9.52 -36.03 -0.34 -2.68 16 3 C 0.13 2.17 5.30 -5.20 -0.03 2.14 16 4 N -0.57 -11.84 2.45 -176.43 -0.43 -12.27 16 5 C 0.22 5.25 4.24 -5.19 -0.02 5.23 16 6 C -0.53 -14.69 9.94 -34.44 -0.34 -15.03 16 7 H 0.08 2.33 7.75 -52.49 -0.41 1.92 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 10 Si 0.87 21.45 27.47 -169.99 -4.67 16.78 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 14 C 0.53 10.46 6.84 -10.98 -0.08 10.39 16 15 O -0.53 -12.35 15.09 5.56 0.08 -12.27 16 16 C -0.15 -2.09 2.38 -91.78 -0.22 -2.30 16 17 H 0.14 1.66 6.19 -51.93 -0.32 1.34 16 18 C -0.12 -1.25 6.56 -25.10 -0.16 -1.41 16 19 C 0.10 0.74 6.51 -3.12 -0.02 0.72 16 20 N -0.56 -6.19 3.14 -112.25 -0.35 -6.54 16 21 C 0.16 1.78 6.60 -83.66 -0.55 1.22 16 22 C -0.13 -1.50 9.28 -39.40 -0.37 -1.87 16 23 C -0.12 -1.24 10.02 -39.54 -0.40 -1.63 16 24 C 0.07 0.66 7.30 -39.41 -0.29 0.37 16 25 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 26 C -0.12 -1.05 10.02 -39.54 -0.40 -1.44 16 27 C -0.13 -1.11 9.42 -39.40 -0.37 -1.48 16 28 C 0.53 7.43 6.97 -10.86 -0.08 7.35 16 29 O -0.49 -7.86 12.38 5.55 0.07 -7.80 16 30 H 0.09 0.98 7.81 -52.49 -0.41 0.57 16 31 H 0.10 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 2.34 7.75 -52.49 -0.41 1.93 16 33 H 0.09 1.29 4.11 -51.93 -0.21 1.08 16 34 H 0.09 1.44 7.85 -51.93 -0.41 1.03 16 35 H 0.04 1.06 6.53 -51.93 -0.34 0.73 16 36 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.11 1.38 6.89 -51.93 -0.36 1.02 16 39 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.53 7.23 -51.93 -0.38 0.16 16 42 H 0.17 2.15 5.26 -52.49 -0.28 1.88 16 43 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.14 0.79 6.74 -52.49 -0.35 0.44 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.17 372.37 -7.77 -41.94 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.53 Total: 3.17 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.37 Total: -0.72 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.01 Total: -45.25 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.15 Total: -20.06 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.17 -7.77 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293943708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.593 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds