Wall clock time and date at job start Wed Apr 1 2020 03:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50698 * 119.99894 * 2 1 4 4 N 1.46494 * 109.47176 * 234.99657 * 3 2 1 5 5 C 1.46507 * 120.00199 * 266.45921 * 4 3 2 6 6 C 1.50707 * 109.46952 * 89.99952 * 5 4 3 7 7 H 1.07996 * 119.99801 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99670 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99891 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00302 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47750 * 89.99660 * 10 8 6 12 12 H 1.48500 * 109.47045 * 209.99725 * 10 8 6 13 13 H 1.48500 * 109.46977 * 329.99506 * 10 8 6 14 14 C 1.34783 * 120.00322 * 86.45712 * 4 3 2 15 15 O 1.21277 * 120.00390 * 183.52092 * 14 4 3 16 16 C 1.50702 * 119.99481 * 3.52535 * 14 4 3 17 17 H 1.09006 * 110.43251 * 313.36403 * 16 14 4 18 18 C 1.54627 * 110.48398 * 190.68480 * 16 14 4 19 19 C 1.54482 * 101.76428 * 216.52104 * 18 16 14 20 20 N 1.46766 * 105.47141 * 25.41568 * 19 18 16 21 21 C 1.40028 * 124.35116 * 163.00267 * 20 19 18 22 22 C 1.38844 * 120.04847 * 173.89160 * 21 20 19 23 23 C 1.38116 * 119.95646 * 179.76953 * 22 21 20 24 24 C 1.38478 * 120.04402 * 0.50983 * 23 22 21 25 25 F 1.35098 * 119.95569 * 179.72218 * 24 23 22 26 26 C 1.38472 * 120.08764 * 359.74565 * 24 23 22 27 27 C 1.38113 * 120.04879 * 359.97438 * 26 24 23 28 28 C 1.34418 * 111.30171 * 342.98581 * 20 19 18 29 29 O 1.21293 * 124.94343 * 180.44578 * 28 20 19 30 30 H 1.08002 * 119.99927 * 359.72824 * 1 2 3 31 31 H 1.07994 * 119.99920 * 179.72437 * 1 2 3 32 32 H 1.08002 * 119.99927 * 180.27175 * 2 1 3 33 33 H 1.09002 * 109.47385 * 354.99737 * 3 2 1 34 34 H 1.09003 * 109.47126 * 114.99936 * 3 2 1 35 35 H 1.08999 * 109.46975 * 209.99778 * 5 4 3 36 36 H 1.08995 * 109.46733 * 329.99900 * 5 4 3 37 37 H 0.97000 * 120.00601 * 180.02562 * 9 8 6 38 38 H 1.08994 * 110.96993 * 334.64000 * 18 16 14 39 39 H 1.09008 * 110.97029 * 98.40618 * 18 16 14 40 40 H 1.08994 * 110.24763 * 266.41634 * 19 18 16 41 41 H 1.08999 * 110.24542 * 144.41723 * 19 18 16 42 42 H 1.08002 * 120.02353 * 0.02562 * 22 21 20 43 43 H 1.08002 * 119.97715 * 180.27252 * 23 22 21 44 44 H 1.08002 * 119.97339 * 180.02562 * 26 24 23 45 45 H 1.07996 * 120.02441 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 -1.1313 5 6 4.3813 0.8981 -0.9493 6 6 4.4856 -0.5801 -1.2237 7 1 3.6063 -1.1404 -1.5052 8 6 5.7034 -1.2172 -1.1145 9 7 5.7944 -2.5072 -1.3535 10 14 7.2239 -0.2484 -0.6257 11 1 7.3649 -0.2610 0.8525 12 1 8.4246 -0.8671 -1.2427 13 1 7.0910 1.1531 -1.0983 14 6 2.5733 1.7555 -2.3398 15 8 3.3248 1.7177 -3.2909 16 6 1.1693 2.2764 -2.5090 17 1 0.4548 1.6070 -2.0297 18 6 0.8328 2.4478 -4.0084 19 6 -0.0356 3.7253 -3.9922 20 7 0.3767 4.4639 -2.7928 21 6 0.1029 5.8182 -2.5658 22 6 0.4235 6.3972 -1.3452 23 6 0.1571 7.7344 -1.1250 24 6 -0.4391 8.4950 -2.1168 25 9 -0.7041 9.8015 -1.8975 26 6 -0.7645 7.9182 -3.3329 27 6 -0.4944 6.5827 -3.5592 28 6 1.0506 3.6730 -1.9400 29 8 1.4977 4.0274 -0.8696 30 1 -0.5400 0.9353 0.0044 31 1 -0.5400 -0.9353 -0.0045 32 1 1.8501 -0.9353 -0.0044 33 1 1.3586 2.1317 -0.0896 34 1 2.6213 1.4026 0.9314 35 1 5.0256 1.4422 -1.6398 36 1 4.6937 1.1004 0.0752 37 1 6.6510 -2.9556 -1.2763 38 1 1.7379 2.5989 -4.5965 39 1 0.2652 1.5950 -4.3808 40 1 -1.0916 3.4628 -3.9290 41 1 0.1529 4.3210 -4.8853 42 1 0.8848 5.8034 -0.5699 43 1 0.4103 8.1863 -0.1773 44 1 -1.2291 8.5132 -4.1053 45 1 -0.7487 6.1331 -4.5076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293943708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:53 Heat of formation + Delta-G solvation = -65.614424 kcal Electronic energy + Delta-G solvation = -30545.754510 eV Core-core repulsion = 26250.194986 eV Total energy + Delta-G solvation = -4295.559524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.148 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.84428 -42.62168 -40.67749 -39.32077 -37.98117 -37.19163 -35.13753 -34.06149 -33.80746 -32.19929 -30.70957 -29.65672 -28.95127 -26.98772 -25.20638 -24.35203 -24.03080 -22.49122 -21.53891 -21.01094 -19.86573 -19.01811 -18.86620 -18.64306 -18.53650 -17.83935 -17.27003 -16.96686 -16.59452 -16.31255 -16.21435 -15.84494 -15.49285 -15.38135 -15.03556 -14.86531 -14.70141 -14.53657 -14.43908 -14.24195 -14.10571 -14.06121 -13.81622 -13.52671 -13.36368 -13.29036 -12.83893 -12.66981 -12.45622 -12.25958 -12.22469 -12.11455 -11.99900 -11.66746 -11.08366 -10.96464 -10.82342 -10.81930 -10.35442 -10.16097 -9.50620 -8.93944 -8.33809 -6.37346 -0.03748 0.20083 1.11643 1.25283 1.29966 1.33856 1.43858 1.47549 1.78236 2.29647 2.32425 2.61485 2.99384 3.04800 3.19591 3.31537 3.64599 3.72289 3.80755 3.87480 4.04477 4.07487 4.13323 4.18114 4.24664 4.37917 4.47002 4.48584 4.64699 4.70288 4.75341 4.87839 4.91961 4.94368 5.03892 5.11082 5.11609 5.13500 5.20124 5.39812 5.42543 5.53427 5.73669 5.80163 5.83193 5.92039 6.22457 6.57044 6.63531 6.74891 7.15598 7.29543 8.82473 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.002802 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.363576 B = 9992.231315 C =10354.500816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.184 4.184 3 C 0.133 3.867 4 N -0.585 5.585 5 C 0.223 3.777 6 C -0.525 4.525 7 H 0.039 0.961 8 C 0.015 3.985 9 N -0.942 5.942 10 Si 0.939 3.061 11 H -0.255 1.255 12 H -0.279 1.279 13 H -0.260 1.260 14 C 0.517 3.483 15 O -0.576 6.576 16 C -0.142 4.142 17 H 0.154 0.846 18 C -0.116 4.116 19 C 0.097 3.903 20 N -0.551 5.551 21 C 0.146 3.854 22 C -0.149 4.149 23 C -0.129 4.129 24 C 0.055 3.945 25 F -0.148 7.148 26 C -0.117 4.117 27 C -0.117 4.117 28 C 0.526 3.474 29 O -0.522 6.522 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.041 0.959 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.168 0.832 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 18.937 -3.947 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.313 5.313 5 C 0.101 3.899 6 C -0.563 4.563 7 H 0.057 0.943 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.763 3.237 11 H -0.180 1.180 12 H -0.205 1.205 13 H -0.185 1.185 14 C 0.304 3.696 15 O -0.456 6.456 16 C -0.166 4.166 17 H 0.171 0.829 18 C -0.154 4.154 19 C -0.023 4.023 20 N -0.273 5.273 21 C 0.052 3.948 22 C -0.169 4.169 23 C -0.148 4.148 24 C 0.035 3.965 25 F -0.127 7.127 26 C -0.136 4.136 27 C -0.137 4.137 28 C 0.315 3.685 29 O -0.399 6.399 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.185 0.815 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.598 18.992 -3.852 27.561 hybrid contribution 1.387 -0.269 0.605 1.537 sum -18.211 18.723 -3.248 26.320 Atomic orbital electron populations 1.24012 0.94272 1.03305 0.98719 1.23360 0.97069 0.98452 1.01437 1.20977 0.92593 0.96143 0.89161 1.47870 1.11923 1.61712 1.09811 1.19400 0.79999 0.93933 0.96554 1.21457 0.95352 0.92977 1.46529 0.94288 1.25729 1.02033 0.95727 0.94825 1.70024 1.26583 1.10630 1.50944 0.85832 0.78799 0.79432 0.79666 1.17973 1.20488 1.18460 1.20344 0.89139 0.77712 0.82365 1.90642 1.57442 1.57656 1.39891 1.22233 0.96032 0.95866 1.02499 0.82910 1.22739 1.01862 0.99798 0.91036 1.22734 1.01066 0.91664 0.86841 1.45806 1.52162 1.07707 1.21643 1.18022 0.99155 0.82484 0.95123 1.21462 1.02351 0.95410 0.97670 1.21148 0.99942 0.93605 1.00091 1.17904 1.03580 0.78572 0.96435 1.91475 1.92252 1.33628 1.95349 1.21248 1.00818 0.95426 0.96116 1.20965 1.00476 0.92903 0.99337 1.20565 0.76880 0.87305 0.83770 1.90617 1.48663 1.78050 1.22526 0.86391 0.86917 0.89669 0.87542 0.89918 0.96321 0.94106 0.92312 0.89950 0.85293 0.85734 0.86346 0.83782 0.83700 0.81466 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 13.31 67.77 0.90 -2.94 16 2 C -0.18 -5.95 9.52 25.64 0.24 -5.70 16 3 C 0.13 4.55 5.30 85.63 0.45 5.01 16 4 N -0.58 -25.05 2.45 -830.48 -2.03 -27.09 16 5 C 0.22 11.34 4.24 85.63 0.36 11.71 16 6 C -0.52 -30.89 9.94 25.60 0.25 -30.63 16 7 H 0.04 2.53 7.75 -2.91 -0.02 2.50 16 8 C 0.02 0.89 5.47 84.65 0.46 1.36 16 9 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 10 Si 0.94 45.33 27.47 68.60 1.88 47.22 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 14 C 0.52 21.06 6.84 87.66 0.60 21.66 16 15 O -0.58 -28.19 15.09 -3.02 -0.05 -28.24 16 16 C -0.14 -3.79 2.38 -11.55 -0.03 -3.82 16 17 H 0.15 3.41 6.19 -2.38 -0.01 3.40 16 18 C -0.12 -2.18 6.56 31.65 0.21 -1.97 16 19 C 0.10 1.08 6.51 86.83 0.57 1.64 16 20 N -0.55 -10.71 3.14 -627.63 -1.97 -12.68 16 21 C 0.15 2.80 6.60 38.13 0.25 3.05 16 22 C -0.15 -3.34 9.28 22.39 0.21 -3.13 16 23 C -0.13 -2.52 10.02 22.30 0.22 -2.30 16 24 C 0.06 0.99 7.30 22.38 0.16 1.15 16 25 F -0.15 -2.87 17.26 44.97 0.78 -2.10 16 26 C -0.12 -1.52 10.02 22.30 0.22 -1.30 16 27 C -0.12 -1.47 9.42 22.39 0.21 -1.25 16 28 C 0.53 14.04 6.97 87.90 0.61 14.66 16 29 O -0.52 -16.76 12.38 -3.07 -0.04 -16.80 16 30 H 0.12 2.11 7.81 -2.91 -0.02 2.08 16 31 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.09 3.44 7.75 -2.91 -0.02 3.42 16 33 H 0.11 3.18 4.11 -2.39 -0.01 3.17 16 34 H 0.08 2.82 7.85 -2.39 -0.02 2.80 16 35 H 0.02 1.03 6.53 -2.39 -0.02 1.01 16 36 H 0.04 1.95 7.29 -2.39 -0.02 1.93 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.08 2.04 6.89 -2.39 -0.02 2.02 16 39 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.12 0.74 7.23 -2.39 -0.02 0.73 16 42 H 0.14 3.87 5.26 -2.91 -0.02 3.85 16 43 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.17 0.91 6.74 -2.91 -0.02 0.89 16 Total: -1.00 -81.35 372.37 5.76 -75.58 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.97 Total: 15.96 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.92 Total: 7.17 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.70 Total: -98.79 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.08 Total: -45.04 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Total: -81.35 5.76 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293943708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.970 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds