Wall clock time and date at job start Wed Apr 1 2020 03:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 C 1.35233 * 125.98802 * 124.99864 * 5 4 2 7 7 C 1.35845 * 107.63576 * 180.02562 * 6 5 4 8 8 N 1.40498 * 126.11017 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99893 * 179.97438 * 8 7 6 10 10 O 1.21418 * 120.00163 * 0.02562 * 9 8 7 11 11 C 1.49190 * 119.99906 * 179.97438 * 9 8 7 12 12 O 1.21416 * 120.00396 * 0.02562 * 11 9 8 13 13 N 1.34785 * 120.00056 * 179.97438 * 11 9 8 14 14 C 1.40302 * 120.00099 * 180.02562 * 13 11 9 15 15 C 1.40717 * 126.09965 * 359.69214 * 14 13 11 16 16 N 1.30880 * 108.37813 * 179.81692 * 15 14 13 17 17 N 1.40065 * 108.43012 * 0.44326 * 16 15 14 18 18 C 1.37292 * 126.05368 * 179.68026 * 17 16 15 19 19 H 1.07995 * 120.00279 * 180.02562 * 18 17 16 20 20 C 1.39013 * 119.99990 * 0.04675 * 18 17 16 21 21 N 1.31279 * 119.99716 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47001 * 59.99915 * 22 20 18 24 24 H 1.48497 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47058 * 299.99837 * 22 20 18 26 26 C 1.35780 * 126.09960 * 180.02562 * 14 13 11 27 27 C 1.40333 * 107.77506 * 0.02562 * 7 6 5 28 28 N 1.30822 * 108.20991 * 359.70960 * 27 7 6 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 37 37 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 38 38 H 1.07992 * 126.18426 * 0.02562 * 6 5 4 39 39 H 0.97004 * 120.00111 * 0.02562 * 8 7 6 40 40 H 0.97004 * 119.99845 * 0.02562 * 13 11 9 41 41 H 1.08008 * 125.81233 * 359.97074 * 15 14 13 42 42 H 0.97008 * 119.99624 * 180.02562 * 21 20 18 43 43 H 1.08003 * 126.24996 * 359.97438 * 26 14 13 44 44 H 1.08005 * 125.89417 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2192 -1.9676 -1.2871 7 6 5.5327 -1.6363 -1.1847 8 7 6.6177 -2.5276 -1.2340 9 6 7.8775 -2.0626 -1.1194 10 8 8.0747 -0.8735 -0.9730 11 6 9.0295 -3.0090 -1.1712 12 8 8.8323 -4.1981 -1.3172 13 7 10.2895 -2.5439 -1.0571 14 6 11.3729 -3.4339 -1.1064 15 6 11.2927 -4.8300 -1.2637 16 7 12.5081 -5.3155 -1.2665 17 7 13.4087 -4.2555 -1.1017 18 6 14.7766 -4.3587 -1.0465 19 1 15.3802 -3.4727 -0.9156 20 6 15.3849 -5.6036 -1.1595 21 7 14.6513 -6.6805 -1.3185 22 14 17.2462 -5.7438 -1.0851 23 1 17.7299 -5.2253 0.2196 24 1 17.6414 -7.1681 -1.2285 25 1 17.8468 -4.9497 -2.1869 26 6 12.6857 -3.1025 -1.0044 27 6 5.6120 -0.2450 -1.0196 28 7 4.3962 0.2378 -1.0293 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7198 -1.2951 37 1 1.7517 -0.1583 -2.1369 38 1 3.8213 -2.9625 -1.4214 39 1 6.4601 -3.4775 -1.3514 40 1 10.4471 -1.5939 -0.9408 41 1 10.3830 -5.4030 -1.3672 42 1 15.0757 -7.5493 -1.3971 43 1 13.0848 -2.1078 -0.8713 44 1 6.5203 0.3288 -0.9092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337533141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:34 Heat of formation + Delta-G solvation = 101.685350 kcal Electronic energy + Delta-G solvation = -28479.415794 eV Core-core repulsion = 24243.323646 eV Total energy + Delta-G solvation = -4236.092148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67917 -40.41276 -39.47601 -38.00689 -36.82828 -35.15162 -34.11557 -33.17285 -32.12465 -30.34963 -29.61830 -28.09762 -27.48756 -26.64715 -25.34445 -24.05194 -22.09914 -21.37665 -20.96705 -20.77666 -19.83835 -19.48213 -18.22021 -17.60276 -17.44084 -16.26023 -15.95125 -15.62552 -15.58571 -15.41203 -15.26671 -15.07370 -14.38118 -14.15474 -14.04349 -13.68686 -13.66078 -13.29322 -13.08796 -13.03044 -12.99652 -12.77035 -12.47878 -11.90266 -11.74410 -11.58890 -11.39554 -11.29279 -11.27771 -11.20756 -10.91211 -10.85689 -10.60040 -10.58695 -10.32115 -9.58230 -9.24202 -9.18625 -8.89654 -8.14883 -7.93335 -6.80365 -6.61679 -4.29253 1.29574 1.77984 2.06659 2.62808 2.67116 2.95039 3.03246 3.06927 3.35193 3.70178 3.74035 3.93184 4.10334 4.27016 4.34803 4.45021 4.56390 4.61436 4.78467 4.89861 4.95294 4.96995 5.01493 5.11156 5.27067 5.33832 5.34832 5.48708 5.56926 5.67146 5.84525 5.92876 6.17662 6.18510 6.33657 6.65424 6.72388 6.73834 6.86943 6.88179 7.13867 7.14806 7.47115 7.73618 7.82452 8.05183 8.16000 8.44108 8.66772 9.29366 9.57918 10.33968 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.049730 B = 0.001583 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.906647 B =17684.980370 C =18102.996908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.159 4.159 4 C 0.142 3.858 5 N -0.366 5.366 6 C 0.023 3.977 7 C -0.001 4.001 8 N -0.616 5.616 9 C 0.517 3.483 10 O -0.518 6.518 11 C 0.488 3.512 12 O -0.522 6.522 13 N -0.580 5.580 14 C -0.071 4.071 15 C -0.025 4.025 16 N -0.261 5.261 17 N -0.137 5.137 18 C -0.322 4.322 19 H 0.118 0.882 20 C 0.047 3.953 21 N -0.767 5.767 22 Si 0.936 3.064 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.076 4.076 27 C 0.052 3.948 28 N -0.281 5.281 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.178 0.822 39 H 0.423 0.577 40 H 0.410 0.590 41 H 0.178 0.822 42 H 0.277 0.723 43 H 0.150 0.850 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.266 10.421 0.876 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.217 4.217 4 C 0.021 3.979 5 N -0.150 5.150 6 C -0.125 4.125 7 C -0.105 4.105 8 N -0.263 5.263 9 C 0.299 3.701 10 O -0.393 6.393 11 C 0.268 3.732 12 O -0.400 6.400 13 N -0.222 5.222 14 C -0.177 4.177 15 C -0.201 4.201 16 N -0.092 5.092 17 N 0.096 4.904 18 C -0.455 4.455 19 H 0.136 0.864 20 C -0.171 4.171 21 N -0.393 5.393 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.228 4.228 27 C -0.135 4.135 28 N -0.103 5.103 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.195 0.805 39 H 0.260 0.740 40 H 0.245 0.755 41 H 0.195 0.805 42 H 0.087 0.913 43 H 0.167 0.833 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -23.333 10.134 0.821 25.452 hybrid contribution 0.716 -0.098 0.025 0.723 sum -22.617 10.036 0.847 24.758 Atomic orbital electron populations 1.21799 0.94011 1.02003 1.02563 1.21405 0.95995 0.98037 0.97248 1.22087 1.04430 0.94056 1.01091 1.21858 0.73725 1.02508 0.99825 1.48235 1.06273 1.03919 1.56583 1.21826 0.90478 0.93011 1.07195 1.17745 0.86680 0.90989 1.15119 1.42394 1.03158 1.10959 1.69770 1.20299 0.83894 0.88515 0.77354 1.90621 1.84891 1.16375 1.47400 1.19363 0.83638 0.88056 0.82111 1.90670 1.84356 1.15645 1.49337 1.42107 1.03412 1.10629 1.66054 1.17240 0.85313 0.90300 1.24841 1.24149 0.97324 0.91514 1.07121 1.78272 0.96192 1.09326 1.25373 1.44560 1.05418 1.02601 1.37808 1.19892 0.77189 0.95978 1.52404 0.86440 1.25665 1.01346 0.94747 0.95334 1.70197 1.36252 0.98717 1.34166 0.85869 0.80354 0.78253 0.79553 1.19084 1.20085 1.19078 1.21304 0.90014 0.92518 1.18962 1.24599 0.96614 0.92503 0.99770 1.77258 0.98576 1.10929 1.23582 0.92267 0.92462 0.91921 0.90682 0.93171 0.89205 0.92969 0.88627 0.89683 0.80490 0.73996 0.75469 0.80533 0.91281 0.83294 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.11 -0.65 3.12 -90.62 -0.28 -0.93 16 3 C -0.16 -1.21 8.91 37.16 0.33 -0.87 16 4 C 0.14 0.83 5.96 -4.04 -0.02 0.81 16 5 N -0.37 -3.37 3.68 -61.16 -0.23 -3.59 16 6 C 0.02 0.20 11.49 -16.91 -0.19 0.01 16 7 C 0.00 -0.01 6.90 -83.95 -0.58 -0.59 16 8 N -0.62 -7.46 5.46 -10.52 -0.06 -7.52 16 9 C 0.52 7.59 7.85 -11.71 -0.09 7.50 16 10 O -0.52 -8.00 13.63 5.44 0.07 -7.93 16 11 C 0.49 8.50 7.85 -11.70 -0.09 8.41 16 12 O -0.52 -10.17 13.62 5.44 0.07 -10.10 16 13 N -0.58 -10.59 5.45 -10.49 -0.06 -10.65 16 14 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 15 C -0.03 -0.65 10.84 -17.02 -0.18 -0.83 16 16 N -0.26 -7.40 10.39 30.81 0.32 -7.08 16 17 N -0.14 -3.69 3.73 -11.40 -0.04 -3.73 16 18 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 19 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 20 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 21 N -0.77 -20.95 11.81 55.50 0.66 -20.30 16 22 Si 0.94 18.51 29.55 -169.99 -5.02 13.49 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.08 -1.77 11.49 -16.38 -0.19 -1.96 16 27 C 0.05 0.66 10.84 -17.19 -0.19 0.47 16 28 N -0.28 -3.33 9.62 30.72 0.30 -3.03 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.89 5.37 -51.93 -0.28 0.62 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.32 8.07 -51.93 -0.42 -0.10 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.42 4.40 8.29 -40.82 -0.34 4.06 16 40 H 0.41 6.39 8.29 -40.82 -0.34 6.05 16 41 H 0.18 4.35 5.92 -52.48 -0.31 4.04 16 42 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.15 2.88 8.06 -52.48 -0.42 2.46 16 44 H 0.21 2.74 5.92 -52.48 -0.31 2.43 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -33.07 376.46 -5.64 -38.71 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.35 Total: 13.90 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.98 Total: 2.15 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.89 Total: -55.90 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.15 Total: -18.03 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.07 -5.64 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337533141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.394 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds