Wall clock time and date at job start Wed Apr 1 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 N 1.46503 * 109.47014 * 184.99892 * 4 2 1 6 6 C 1.35233 * 125.98802 * 124.99864 * 5 4 2 7 7 C 1.35845 * 107.63576 * 180.02562 * 6 5 4 8 8 N 1.40498 * 126.11017 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99893 * 179.97438 * 8 7 6 10 10 O 1.21418 * 120.00163 * 0.02562 * 9 8 7 11 11 C 1.49190 * 119.99906 * 179.97438 * 9 8 7 12 12 O 1.21416 * 120.00396 * 0.02562 * 11 9 8 13 13 N 1.34785 * 120.00056 * 179.97438 * 11 9 8 14 14 C 1.40302 * 120.00099 * 180.02562 * 13 11 9 15 15 C 1.40717 * 126.09965 * 359.69214 * 14 13 11 16 16 N 1.30880 * 108.37813 * 179.81692 * 15 14 13 17 17 N 1.40065 * 108.43012 * 0.44326 * 16 15 14 18 18 C 1.37292 * 126.05368 * 179.68026 * 17 16 15 19 19 H 1.07995 * 120.00279 * 180.02562 * 18 17 16 20 20 C 1.39013 * 119.99990 * 0.04675 * 18 17 16 21 21 N 1.31279 * 119.99716 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47001 * 59.99915 * 22 20 18 24 24 H 1.48497 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47058 * 299.99837 * 22 20 18 26 26 C 1.35780 * 126.09960 * 180.02562 * 14 13 11 27 27 C 1.40333 * 107.77506 * 0.02562 * 7 6 5 28 28 N 1.30822 * 108.20991 * 359.70960 * 27 7 6 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 37 37 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 38 38 H 1.07992 * 126.18426 * 0.02562 * 6 5 4 39 39 H 0.97004 * 120.00111 * 0.02562 * 8 7 6 40 40 H 0.97004 * 119.99845 * 0.02562 * 13 11 9 41 41 H 1.08008 * 125.81233 * 359.97074 * 15 14 13 42 42 H 0.97008 * 119.99624 * 180.02562 * 21 20 18 43 43 H 1.08003 * 126.24996 * 359.97438 * 26 14 13 44 44 H 1.08005 * 125.89417 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2192 -1.9676 -1.2871 7 6 5.5327 -1.6363 -1.1847 8 7 6.6177 -2.5276 -1.2340 9 6 7.8775 -2.0626 -1.1194 10 8 8.0747 -0.8735 -0.9730 11 6 9.0295 -3.0090 -1.1712 12 8 8.8323 -4.1981 -1.3172 13 7 10.2895 -2.5439 -1.0571 14 6 11.3729 -3.4339 -1.1064 15 6 11.2927 -4.8300 -1.2637 16 7 12.5081 -5.3155 -1.2665 17 7 13.4087 -4.2555 -1.1017 18 6 14.7766 -4.3587 -1.0465 19 1 15.3802 -3.4727 -0.9156 20 6 15.3849 -5.6036 -1.1595 21 7 14.6513 -6.6805 -1.3185 22 14 17.2462 -5.7438 -1.0851 23 1 17.7299 -5.2253 0.2196 24 1 17.6414 -7.1681 -1.2285 25 1 17.8468 -4.9497 -2.1869 26 6 12.6857 -3.1025 -1.0044 27 6 5.6120 -0.2450 -1.0196 28 7 4.3962 0.2378 -1.0293 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6054 -1.7198 -1.2951 37 1 1.7517 -0.1583 -2.1369 38 1 3.8213 -2.9625 -1.4214 39 1 6.4601 -3.4775 -1.3514 40 1 10.4471 -1.5939 -0.9408 41 1 10.3830 -5.4030 -1.3672 42 1 15.0757 -7.5493 -1.3971 43 1 13.0848 -2.1078 -0.8713 44 1 6.5203 0.3288 -0.9092 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337533141.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:32 Heat of formation + Delta-G solvation = 78.392816 kcal Electronic energy + Delta-G solvation = -28480.425834 eV Core-core repulsion = 24243.323646 eV Total energy + Delta-G solvation = -4237.102188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.56816 -41.88929 -41.03459 -39.40921 -37.42471 -36.40653 -35.57710 -34.88675 -32.85279 -32.28171 -30.50862 -29.82019 -27.99117 -27.55893 -26.86394 -25.44006 -23.09819 -22.84662 -22.17932 -21.59793 -21.27060 -20.77053 -19.59053 -19.06342 -18.49328 -17.43074 -17.37221 -17.05720 -16.76236 -16.52612 -16.36083 -15.88538 -15.73233 -15.49816 -15.14254 -15.07239 -14.83353 -14.79618 -14.33155 -13.92782 -13.74911 -13.49420 -13.36286 -13.20558 -12.95026 -12.92821 -12.87507 -12.52726 -12.37265 -12.12191 -12.03998 -11.95201 -11.77288 -11.66234 -11.32425 -11.04274 -10.85659 -10.57310 -10.35169 -10.12585 -8.82156 -8.59961 -8.47464 -6.25245 0.13436 0.88538 1.13900 1.30780 1.42203 1.57809 1.62662 1.64046 1.82409 2.13732 2.17304 2.56595 2.59699 2.94618 3.09056 3.50184 3.56443 3.81850 3.88632 4.06717 4.20081 4.35849 4.41190 4.49535 4.51141 4.53992 4.66064 4.76436 4.81831 4.93605 4.98357 5.00496 5.03245 5.09019 5.22745 5.24596 5.31463 5.40038 5.48453 5.76319 5.91828 6.00917 6.06878 6.26154 6.47190 6.63315 6.69801 6.83675 7.06534 7.42443 7.64395 8.51444 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.049730 B = 0.001583 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.906647 B =17684.980370 C =18102.996908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.160 4.160 4 C 0.132 3.868 5 N -0.359 5.359 6 C 0.052 3.948 7 C -0.035 4.035 8 N -0.598 5.598 9 C 0.522 3.478 10 O -0.527 6.527 11 C 0.494 3.506 12 O -0.541 6.541 13 N -0.580 5.580 14 C -0.058 4.058 15 C -0.046 4.046 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.355 4.355 19 H 0.141 0.859 20 C -0.004 4.004 21 N -0.820 5.820 22 Si 1.019 2.981 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.254 1.254 26 C -0.074 4.074 27 C 0.033 3.967 28 N -0.301 5.301 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.132 0.868 37 H 0.093 0.907 38 H 0.222 0.778 39 H 0.431 0.569 40 H 0.424 0.576 41 H 0.178 0.822 42 H 0.278 0.722 43 H 0.188 0.812 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.955 11.134 0.777 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.217 4.217 4 C 0.013 3.987 5 N -0.142 5.142 6 C -0.098 4.098 7 C -0.139 4.139 8 N -0.244 5.244 9 C 0.304 3.696 10 O -0.404 6.404 11 C 0.276 3.724 12 O -0.419 6.419 13 N -0.224 5.224 14 C -0.164 4.164 15 C -0.222 4.222 16 N -0.140 5.140 17 N 0.069 4.931 18 C -0.486 4.486 19 H 0.159 0.841 20 C -0.216 4.216 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.178 1.178 26 C -0.225 4.225 27 C -0.153 4.153 28 N -0.124 5.124 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.150 0.850 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.270 0.730 40 H 0.262 0.738 41 H 0.195 0.805 42 H 0.088 0.912 43 H 0.205 0.795 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -25.090 10.896 0.725 27.364 hybrid contribution 0.896 -0.202 0.062 0.920 sum -24.194 10.695 0.787 26.464 Atomic orbital electron populations 1.21756 0.92203 1.03098 1.02779 1.21356 0.97365 0.96584 0.96958 1.22065 1.02774 0.95625 1.01260 1.22270 0.71699 1.04838 0.99911 1.48646 1.07360 1.03478 1.54758 1.22473 0.89295 0.94422 1.03574 1.17904 0.87448 0.90481 1.18073 1.42184 1.02403 1.11534 1.68291 1.19626 0.83941 0.87661 0.78399 1.90640 1.84981 1.16345 1.48429 1.19910 0.84059 0.88230 0.80247 1.90657 1.84812 1.16886 1.49559 1.42031 1.02798 1.10785 1.66827 1.17281 0.86501 0.89886 1.22731 1.24272 0.96761 0.93058 1.08072 1.78162 0.97430 1.11371 1.27028 1.44825 1.05913 1.03127 1.39228 1.20620 0.77396 0.97421 1.53176 0.84141 1.26860 1.06794 0.93909 0.94021 1.70369 1.38733 0.99439 1.36237 0.84656 0.73252 0.78142 0.80200 1.17820 1.20177 1.17809 1.22003 0.90057 0.93294 1.17144 1.24471 0.96689 0.93279 1.00854 1.77275 0.98676 1.12117 1.24295 0.91631 0.90916 0.92193 0.91755 0.93108 0.91675 0.92747 0.84991 0.88872 0.76182 0.72959 0.73788 0.80549 0.91238 0.79525 0.79210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.19 71.98 0.66 -0.10 16 2 C -0.10 -1.01 3.12 -10.79 -0.03 -1.05 16 3 C -0.16 -2.29 8.91 71.98 0.64 -1.65 16 4 C 0.13 1.10 5.96 86.38 0.51 1.62 16 5 N -0.36 -5.71 3.68 -347.40 -1.28 -6.99 16 6 C 0.05 0.75 11.49 83.61 0.96 1.71 16 7 C -0.03 -0.76 6.90 37.71 0.26 -0.50 16 8 N -0.60 -13.64 5.46 -305.54 -1.67 -15.31 16 9 C 0.52 14.99 7.85 87.19 0.68 15.67 16 10 O -0.53 -16.16 13.63 -3.46 -0.05 -16.20 16 11 C 0.49 17.01 7.85 87.19 0.68 17.69 16 12 O -0.54 -21.04 13.62 -3.45 -0.05 -21.08 16 13 N -0.58 -20.88 5.45 -305.42 -1.66 -22.55 16 14 C -0.06 -2.62 6.90 37.82 0.26 -2.36 16 15 C -0.05 -2.42 10.84 85.44 0.93 -1.49 16 16 N -0.31 -18.12 10.39 -56.43 -0.59 -18.71 16 17 N -0.16 -8.91 3.73 -189.98 -0.71 -9.62 16 18 C -0.36 -18.54 10.25 84.02 0.86 -17.68 16 19 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 20 C 0.00 -0.18 5.50 84.96 0.47 0.29 16 21 N -0.82 -46.36 11.81 21.67 0.26 -46.11 16 22 Si 1.02 37.91 29.55 68.60 2.03 39.93 16 23 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 24 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 C -0.07 -3.41 11.49 83.41 0.96 -2.45 16 27 C 0.03 0.82 10.84 85.35 0.93 1.75 16 28 N -0.30 -6.91 9.62 -56.72 -0.55 -7.45 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.29 5.37 -2.39 -0.01 1.28 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 0.20 8.07 -2.39 -0.02 0.18 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.22 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.43 8.19 8.29 -92.71 -0.77 7.42 16 40 H 0.42 12.79 8.29 -92.71 -0.77 12.02 16 41 H 0.18 9.01 5.92 -2.91 -0.02 8.99 16 42 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 43 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 44 H 0.19 5.26 5.92 -2.91 -0.02 5.24 16 Total: -1.00 -75.77 376.46 4.05 -71.71 By element: Atomic # 1 Polarization: 41.36 SS G_CDS: -0.46 Total: 40.90 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 8.77 Total: 11.47 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -6.20 Total: -126.73 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.09 Total: -37.29 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Total: -75.77 4.05 -71.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337533141.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.106 kcal (2) G-P(sol) polarization free energy of solvation -75.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds