Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00387 * 2 1 4 4 C 1.53004 * 109.46947 * 66.04765 * 3 2 1 5 5 N 1.46499 * 109.47198 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21583 * 120.00270 * 359.72083 * 6 5 4 8 8 C 1.47532 * 119.99530 * 179.72393 * 6 5 4 9 9 C 1.39412 * 120.75904 * 359.97438 * 8 6 5 10 10 N 1.31919 * 121.01730 * 179.97438 * 9 8 6 11 11 C 1.31789 * 122.59803 * 0.02562 * 10 9 8 12 12 C 1.39440 * 120.63728 * 0.02562 * 11 10 9 13 13 N 1.35701 * 134.43165 * 180.02562 * 12 11 10 14 14 C 1.30139 * 109.49671 * 179.19001 * 13 12 11 15 15 N 1.36261 * 110.05676 * 0.69029 * 14 13 12 16 16 H 0.97001 * 126.29886 * 179.42906 * 15 14 13 17 17 C 1.36925 * 107.40382 * 359.42465 * 15 14 13 18 18 C 1.46906 * 111.00013 * 236.04852 * 2 1 3 19 19 C 1.50704 * 109.46950 * 293.95692 * 18 2 1 20 20 O 1.21292 * 120.00070 * 359.97438 * 19 18 2 21 21 N 1.34774 * 119.99609 * 179.97438 * 19 18 2 22 22 C 1.37101 * 119.99744 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00215 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99832 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99419 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00201 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47280 * 89.99556 * 26 24 22 28 28 H 1.48493 * 109.47044 * 209.99569 * 26 24 22 29 29 H 1.48506 * 109.47101 * 329.99387 * 26 24 22 30 30 H 1.09006 * 109.47151 * 59.99589 * 1 2 3 31 31 H 1.09000 * 109.47496 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47031 * 299.99782 * 1 2 3 33 33 H 1.08995 * 109.47478 * 306.05246 * 3 2 1 34 34 H 1.09006 * 109.47065 * 186.04643 * 3 2 1 35 35 H 1.09009 * 109.46730 * 59.99875 * 4 3 2 36 36 H 1.08998 * 109.46846 * 300.00419 * 4 3 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 38 38 H 1.08000 * 119.48499 * 0.02562 * 9 8 6 39 39 H 1.08010 * 119.68068 * 180.02562 * 11 10 9 40 40 H 1.07999 * 124.97383 * 180.09028 * 14 13 12 41 41 H 1.09007 * 109.46952 * 53.95217 * 18 2 1 42 42 H 1.08995 * 109.47632 * 173.95335 * 18 2 1 43 43 H 0.97000 * 120.00714 * 0.02562 * 21 19 18 44 44 H 0.97008 * 119.99466 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1561 3.4252 1.3181 6 6 1.9599 4.2223 2.3871 7 8 1.3433 3.8078 3.3495 8 6 2.4935 5.5977 2.3894 9 6 3.2031 6.0890 1.2946 10 7 3.6820 7.3182 1.2910 11 6 3.5230 8.1451 2.3047 12 6 2.8282 7.7453 3.4457 13 7 2.5046 8.3442 4.6195 14 6 1.8170 7.5183 5.3535 15 7 1.6676 6.3295 4.7045 16 1 1.2029 5.5468 5.0395 17 6 2.2941 6.4432 3.4923 18 6 1.9954 -0.7660 -1.1377 19 6 1.6368 -2.2204 -0.9730 20 8 1.0053 -2.5833 -0.0031 21 7 2.0179 -3.1179 -1.9034 22 6 1.6921 -4.4411 -1.7534 23 1 1.1298 -4.7643 -0.8898 24 6 2.0845 -5.3664 -2.7130 25 7 1.7718 -6.6346 -2.5693 26 14 3.0565 -4.8074 -4.2070 27 1 4.5091 -4.8749 -3.9061 28 1 2.7478 -5.6932 -5.3581 29 1 2.6853 -3.4096 -4.5444 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8308 34 1 3.0798 1.3443 -0.1083 35 1 2.0659 1.5013 2.1492 36 1 0.5473 2.0844 1.4266 37 1 2.6483 3.7558 0.5504 38 1 3.3626 5.4537 0.4359 39 1 3.9348 9.1422 2.2513 40 1 1.4305 7.7391 6.3375 41 1 1.5610 -0.3872 -2.0629 42 1 3.0796 -0.6611 -1.1758 43 1 2.5233 -2.8278 -2.6789 44 1 2.0461 -7.2806 -3.2390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663188806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = 33.000505 kcal Electronic energy + Delta-G solvation = -28455.415917 eV Core-core repulsion = 24216.345371 eV Total energy + Delta-G solvation = -4239.070547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.97372 -40.19914 -38.94905 -38.73284 -37.00571 -34.95300 -33.92747 -33.80796 -31.91350 -31.70605 -30.69675 -29.45272 -27.90460 -25.83196 -24.97080 -23.83735 -23.55925 -22.59627 -21.42855 -20.94026 -19.40200 -19.14104 -18.32250 -18.23908 -17.77496 -16.56047 -16.33434 -16.13361 -15.86776 -15.69615 -15.39994 -15.17605 -15.03974 -14.81314 -14.44458 -14.23674 -13.87521 -13.69307 -13.51993 -13.17900 -13.14653 -13.08585 -12.47938 -12.13103 -11.95005 -11.62614 -11.45666 -11.42634 -11.21608 -11.09272 -11.01901 -10.86784 -10.62718 -10.02477 -10.00138 -9.70050 -9.57380 -9.46008 -8.95764 -8.65489 -8.21726 -8.07405 -6.33786 -3.85374 -0.19049 0.81108 1.91243 2.30283 2.56451 2.58287 2.99358 3.04197 3.12743 3.34547 3.50619 3.69159 3.73996 3.89671 3.98243 4.07599 4.26494 4.39229 4.52141 4.63491 4.67181 4.74087 4.90046 5.02059 5.17055 5.23830 5.37626 5.42031 5.53254 5.60522 5.67075 5.71023 5.74987 5.82155 5.82982 5.90546 5.98550 6.43615 6.65937 6.95728 7.03584 7.05833 7.15910 7.36167 7.55129 7.69330 8.11513 8.56995 8.92369 9.39288 9.79760 10.79245 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.001620 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.246572 B =17278.795721 C =18039.648685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.043 3.957 4 C 0.121 3.879 5 N -0.719 5.719 6 C 0.568 3.432 7 O -0.545 6.545 8 C -0.179 4.179 9 C 0.141 3.859 10 N -0.489 5.489 11 C 0.202 3.798 12 C -0.018 4.018 13 N -0.478 5.478 14 C 0.268 3.732 15 N -0.578 5.578 16 H 0.439 0.561 17 C 0.129 3.871 18 C 0.044 3.956 19 C 0.452 3.548 20 O -0.558 6.558 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.880 5.880 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.017 0.983 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.226 0.774 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 30.881 7.966 32.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.086 4.086 4 C -0.002 4.002 5 N -0.370 5.370 6 C 0.355 3.645 7 O -0.423 6.423 8 C -0.188 4.188 9 C -0.011 4.011 10 N -0.199 5.199 11 C 0.036 3.964 12 C -0.139 4.139 13 N -0.197 5.197 14 C -0.020 4.020 15 N -0.189 5.189 16 H 0.281 0.719 17 C 0.007 3.993 18 C -0.087 4.087 19 C 0.237 3.763 20 O -0.440 6.440 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.138 0.862 24 C -0.162 4.162 25 N -0.520 5.520 26 Si 0.707 3.293 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.235 0.765 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.242 0.758 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.897 30.911 9.085 32.348 hybrid contribution -0.174 -0.739 -1.653 1.819 sum 2.722 30.172 7.432 31.193 Atomic orbital electron populations 1.22652 0.86268 1.04929 0.99270 1.61430 1.09101 1.10416 1.42935 1.22266 1.00916 0.89808 0.95600 1.21413 0.99816 0.79981 0.98984 1.45791 1.57547 1.14609 1.19054 1.17850 0.79556 0.84309 0.82797 1.90740 1.41762 1.75456 1.34387 1.19934 1.08308 0.95112 0.95412 1.22783 0.90848 0.92099 0.95416 1.67724 1.20928 1.03996 1.27211 1.22380 0.90158 0.99018 0.84810 1.20212 1.05329 0.91611 0.96714 1.70514 1.16006 1.30589 1.02617 1.25726 0.96412 0.80498 0.99399 1.43271 1.45536 1.16332 1.13735 0.71904 1.18692 0.96611 0.96223 0.87786 1.21908 1.00833 0.94100 0.91887 1.19593 0.85252 0.86381 0.85049 1.90536 1.42631 1.79886 1.30938 1.42205 1.50998 1.08383 1.21387 1.19429 1.33935 0.80285 1.09744 0.86249 1.25043 0.97865 0.95136 0.98109 1.69626 1.45564 1.01156 1.35693 0.86668 0.80905 0.78679 0.83096 1.19589 1.20186 1.19559 0.96458 0.88257 0.91728 0.94321 0.90070 0.89839 0.90786 0.76459 0.81649 0.81052 0.75802 0.93157 0.89117 0.79726 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.96 60.06 0.54 0.78 16 2 N -0.51 -7.59 4.50 -244.36 -1.10 -8.69 16 3 C 0.04 0.44 5.07 -3.82 -0.02 0.42 16 4 C 0.12 1.25 5.60 -4.04 -0.02 1.22 16 5 N -0.72 -5.84 5.51 -61.35 -0.34 -6.18 16 6 C 0.57 5.76 7.77 -12.47 -0.10 5.66 16 7 O -0.54 -7.09 15.52 5.29 0.08 -7.01 16 8 C -0.18 -1.59 5.89 -104.86 -0.62 -2.20 16 9 C 0.14 1.02 10.71 -17.08 -0.18 0.84 16 10 N -0.49 -4.03 10.30 -12.64 -0.13 -4.16 16 11 C 0.20 1.58 11.25 -17.12 -0.19 1.39 16 12 C -0.02 -0.16 7.27 -84.74 -0.62 -0.78 16 13 N -0.48 -4.10 11.28 -12.00 -0.14 -4.24 16 14 C 0.27 1.52 12.97 -89.55 -1.16 0.36 16 15 N -0.58 -4.16 6.02 -11.51 -0.07 -4.23 16 16 H 0.44 2.81 7.92 -40.82 -0.32 2.49 16 17 C 0.13 1.20 6.93 -83.81 -0.58 0.62 16 18 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 19 C 0.45 9.91 7.47 -10.98 -0.08 9.82 16 20 O -0.56 -14.50 13.91 5.55 0.08 -14.42 16 21 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 22 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 23 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 24 C 0.04 1.12 5.50 -17.46 -0.10 1.03 16 25 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 26 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 27 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 29 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 32 H 0.06 0.86 6.47 -51.93 -0.34 0.52 16 33 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 35 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 37 H 0.40 2.02 6.54 -40.82 -0.27 1.75 16 38 H 0.17 0.67 6.42 -52.49 -0.34 0.33 16 39 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.23 0.15 8.06 -52.49 -0.42 -0.27 16 41 H 0.05 0.69 8.12 -51.92 -0.42 0.27 16 42 H 0.09 1.21 7.93 -51.93 -0.41 0.79 16 43 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 44 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -37.09 371.26 -8.38 -45.47 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.06 Total: 10.81 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -3.31 Total: 11.18 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -1.05 Total: -65.90 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.16 Total: -21.43 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.09 -8.38 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663188806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.474 kcal (2) G-P(sol) polarization free energy of solvation -37.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds