Wall clock time and date at job start Wed Apr 1 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.52998 * 109.47315 * 89.99546 * 3 2 1 5 5 N 1.46498 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.46509 * 119.99609 * 90.00341 * 5 4 3 7 7 C 1.34770 * 120.00594 * 270.00319 * 5 4 3 8 8 O 1.21286 * 119.99719 * 5.04325 * 7 5 4 9 9 C 1.50699 * 120.00106 * 185.04290 * 7 5 4 10 10 H 1.08990 * 110.02071 * 23.90408 * 9 7 5 11 11 C 1.54267 * 110.03348 * 262.46073 * 9 7 5 12 12 C 1.54889 * 104.19422 * 217.10872 * 11 9 7 13 13 C 1.54888 * 102.75290 * 37.94210 * 12 11 9 14 14 H 1.08996 * 110.48956 * 80.73294 * 13 12 11 15 15 F 1.39895 * 110.48751 * 203.37995 * 13 12 11 16 16 C 1.53876 * 110.03279 * 145.29339 * 9 7 5 17 17 C 1.34776 * 120.00119 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00499 * 179.97438 * 17 2 1 19 19 C 1.50703 * 120.00007 * 0.02562 * 17 2 1 20 20 S 1.81000 * 109.47134 * 179.97438 * 19 17 2 21 21 C 1.76199 * 99.99820 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00249 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99883 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00023 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47019 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47024 * 119.99890 * 25 23 21 28 28 H 1.48497 * 109.46935 * 240.00364 * 25 23 21 29 29 H 1.09001 * 109.47288 * 90.00548 * 1 2 3 30 30 H 1.09000 * 109.46840 * 210.00166 * 1 2 3 31 31 H 1.09002 * 109.47259 * 330.00051 * 1 2 3 32 32 H 1.09000 * 109.46851 * 210.00362 * 3 2 1 33 33 H 1.09002 * 109.46737 * 329.99967 * 3 2 1 34 34 H 1.08998 * 109.47093 * 300.00258 * 4 3 2 35 35 H 1.09002 * 109.46874 * 60.00505 * 4 3 2 36 36 H 1.09003 * 109.46812 * 95.19799 * 6 5 4 37 37 H 1.08999 * 109.47156 * 215.19832 * 6 5 4 38 38 H 1.09003 * 109.47034 * 335.19933 * 6 5 4 39 39 H 1.09005 * 110.48670 * 335.78083 * 11 9 7 40 40 H 1.08990 * 110.49118 * 98.42628 * 11 9 7 41 41 H 1.09000 * 110.75455 * 279.61998 * 12 11 9 42 42 H 1.09002 * 110.91386 * 156.33131 * 12 11 9 43 43 H 1.09000 * 110.03436 * 238.56811 * 16 9 7 44 44 H 1.09009 * 110.03197 * 359.95472 * 16 9 7 45 45 H 1.08997 * 109.46929 * 299.99641 * 19 17 2 46 46 H 1.08996 * 109.47318 * 59.99441 * 19 17 2 47 47 H 0.96997 * 119.99630 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1855 2.9789 1.4424 6 6 2.4534 4.2479 1.4421 7 6 4.5332 2.9784 1.4425 8 8 5.1392 1.9318 1.3504 9 6 5.2872 4.2782 1.5572 10 1 4.6632 5.0302 2.0399 11 6 5.7164 4.7653 0.1578 12 6 7.1159 5.3887 0.3854 13 6 7.7495 4.4351 1.4286 14 1 8.1420 3.5428 0.9410 15 9 8.7600 5.0900 2.1407 16 6 6.5798 4.0683 2.3652 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3854 -2.4723 0.0005 20 16 2.5616 -3.8481 0.0005 21 6 1.4415 -5.2082 0.0013 22 1 0.3762 -5.0305 0.0012 23 6 1.9283 -6.5081 0.0010 24 7 3.2266 -6.7247 0.0006 25 14 0.7408 -7.9501 0.0011 26 1 -0.6547 -7.4422 0.0009 27 1 0.9662 -8.7770 -1.2116 28 1 0.9668 -8.7773 1.2134 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.1499 1.1383 -0.5139 33 1 1.6084 2.0283 -0.5139 34 1 1.5000 1.8408 1.9562 35 1 3.0416 0.9508 1.9563 36 1 2.3525 4.6093 2.4655 37 1 2.9994 4.9822 0.8497 38 1 1.4638 4.0964 1.0109 39 1 5.7807 3.9263 -0.5351 40 1 5.0202 5.5165 -0.2149 41 1 7.0284 6.3980 0.7876 42 1 7.6956 5.3913 -0.5377 43 1 6.5834 4.7191 3.2396 44 1 6.6614 3.0264 2.6751 45 1 0.7585 -2.5299 0.8903 46 1 0.7590 -2.5303 -0.8896 47 1 3.5667 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704875708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:14 Heat of formation + Delta-G solvation = -123.128063 kcal Electronic energy + Delta-G solvation = -28081.967879 eV Core-core repulsion = 23919.358328 eV Total energy + Delta-G solvation = -4162.609551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -47.84479 -40.59506 -39.37823 -37.29280 -36.07636 -35.09116 -32.40937 -31.31083 -29.56098 -28.94858 -28.24411 -27.03935 -26.26524 -25.46205 -23.63128 -21.59553 -21.31895 -19.23832 -19.05782 -17.96480 -17.63926 -16.85571 -16.58672 -16.46533 -16.13201 -15.88962 -15.22463 -14.98770 -14.97366 -14.78836 -14.22301 -13.89369 -13.81771 -13.65991 -13.45707 -13.41221 -13.24369 -12.93474 -12.67207 -12.58309 -12.52182 -12.33996 -12.25614 -12.05765 -11.81190 -11.75296 -11.30278 -11.08538 -11.05877 -10.99621 -10.98651 -10.82520 -10.73574 -9.90587 -9.77778 -9.34920 -9.17343 -9.05553 -8.41429 -8.18473 -6.47485 -6.19495 -3.89933 2.37470 2.54471 3.05330 3.11990 3.22584 3.28501 3.32778 3.65254 3.90737 3.97097 4.08895 4.21899 4.31964 4.64674 4.69459 4.74990 4.77096 4.85634 4.87956 4.90177 5.02537 5.04978 5.07120 5.13277 5.15396 5.19845 5.23819 5.26788 5.41281 5.42218 5.43296 5.57572 5.64541 5.67044 5.76033 5.82142 5.88895 5.89689 5.95236 6.14526 6.20120 6.65339 7.08821 7.53088 7.61609 7.98282 8.37219 8.60399 9.25558 10.87963 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002081 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.870913 B =13454.928856 C =14697.072490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.107 3.893 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.078 3.922 7 C 0.512 3.488 8 O -0.512 6.512 9 C -0.110 4.110 10 H 0.097 0.903 11 C -0.109 4.109 12 C -0.145 4.145 13 C 0.085 3.915 14 H 0.097 0.903 15 F -0.212 7.212 16 C -0.138 4.138 17 C 0.528 3.472 18 O -0.502 6.502 19 C -0.149 4.149 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 29.817 2.163 30.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C -0.018 4.018 4 C -0.023 4.023 5 N -0.353 5.353 6 C -0.065 4.065 7 C 0.299 3.701 8 O -0.386 6.386 9 C -0.131 4.131 10 H 0.115 0.885 11 C -0.147 4.147 12 C -0.183 4.183 13 C 0.048 3.952 14 H 0.115 0.885 15 F -0.193 7.193 16 C -0.176 4.176 17 C 0.316 3.684 18 O -0.375 6.375 19 C -0.299 4.299 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.137 4.137 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.958 29.112 2.134 29.206 hybrid contribution -2.449 -0.789 0.078 2.574 sum -3.407 28.323 2.212 28.613 Atomic orbital electron populations 1.21766 0.79640 1.03025 1.01783 1.47817 1.06723 1.05465 1.76324 1.21649 0.98448 0.84996 0.96666 1.21897 0.96698 0.85697 0.98018 1.47816 1.05849 1.07006 1.74616 1.21826 0.97443 0.85406 1.01865 1.20627 0.81941 0.91215 0.76287 1.90839 1.67316 1.33198 1.47228 1.21904 0.97185 0.95594 0.98467 0.88457 1.22243 0.96472 1.01033 0.94959 1.23064 0.96155 0.99471 0.99640 1.22478 0.85562 0.95449 0.91673 0.88532 1.92800 1.62844 1.83217 1.80433 1.22693 0.91968 1.04799 0.98182 1.20416 0.88083 0.84548 0.75392 1.90760 1.13536 1.86557 1.46607 1.23551 1.04517 0.97247 1.04634 1.85481 1.07994 0.93328 1.96675 1.22898 0.94319 0.92223 1.58814 0.90917 1.25003 0.95664 0.98394 0.94604 1.70033 1.11728 1.21541 1.46908 0.86119 0.80325 0.81154 0.77893 1.19636 1.20581 1.20572 0.92714 0.90544 0.91592 0.89429 0.91099 0.90560 0.89130 0.92446 0.91101 0.90671 0.90151 0.90142 0.89923 0.89920 0.89858 0.88837 0.89299 0.89323 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.24 59.85 0.61 1.41 16 2 N -0.63 -8.85 2.87 -181.57 -0.52 -9.37 16 3 C 0.11 1.32 5.73 -4.04 -0.02 1.30 16 4 C 0.10 1.15 5.67 -4.04 -0.02 1.13 16 5 N -0.62 -5.80 2.87 -181.57 -0.52 -6.32 16 6 C 0.08 0.36 9.59 59.85 0.57 0.93 16 7 C 0.51 5.91 6.50 -10.99 -0.07 5.84 16 8 O -0.51 -8.69 15.51 5.55 0.09 -8.60 16 9 C -0.11 -0.85 2.43 -90.65 -0.22 -1.07 16 10 H 0.10 0.50 6.67 -51.93 -0.35 0.15 16 11 C -0.11 -0.71 6.19 -25.07 -0.16 -0.86 16 12 C -0.15 -0.93 6.70 -24.74 -0.17 -1.10 16 13 C 0.08 0.74 4.66 -25.07 -0.12 0.63 16 14 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 15 F -0.21 -2.24 17.17 2.25 0.04 -2.20 16 16 C -0.14 -1.23 6.12 -25.61 -0.16 -1.38 16 17 C 0.53 10.37 7.69 -10.98 -0.08 10.29 16 18 O -0.50 -12.14 15.44 5.56 0.09 -12.06 16 19 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 20 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 21 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 25 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.77 6.44 -51.93 -0.33 0.44 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.09 1.40 7.42 -51.93 -0.39 1.02 16 33 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.09 1.42 7.50 -51.93 -0.39 1.03 16 36 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.22 6.66 -51.93 -0.35 -0.12 16 38 H 0.07 0.25 8.03 -51.93 -0.42 -0.16 16 39 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 40 H 0.08 0.34 7.96 -51.93 -0.41 -0.08 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 44 H 0.09 1.05 6.94 -51.92 -0.36 0.69 16 45 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 46 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -38.45 399.88 -8.31 -46.76 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.54 Total: -2.17 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 0.54 Total: 1.10 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.31 Total: -41.50 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.17 Total: -20.66 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.45 -8.31 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.369 kcal (2) G-P(sol) polarization free energy of solvation -38.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds