Wall clock time and date at job start Wed Apr 1 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.52998 * 109.47315 * 89.99546 * 3 2 1 5 5 N 1.46498 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.46509 * 119.99609 * 90.00341 * 5 4 3 7 7 C 1.34770 * 120.00594 * 270.00319 * 5 4 3 8 8 O 1.21286 * 119.99719 * 5.04325 * 7 5 4 9 9 C 1.50699 * 120.00106 * 185.04290 * 7 5 4 10 10 H 1.08990 * 110.02071 * 23.90408 * 9 7 5 11 11 C 1.54267 * 110.03348 * 262.46073 * 9 7 5 12 12 C 1.54889 * 104.19422 * 217.10872 * 11 9 7 13 13 C 1.54888 * 102.75290 * 37.94210 * 12 11 9 14 14 H 1.08996 * 110.48956 * 80.73294 * 13 12 11 15 15 F 1.39895 * 110.48751 * 203.37995 * 13 12 11 16 16 C 1.53876 * 110.03279 * 145.29339 * 9 7 5 17 17 C 1.34776 * 120.00119 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00499 * 179.97438 * 17 2 1 19 19 C 1.50703 * 120.00007 * 0.02562 * 17 2 1 20 20 S 1.81000 * 109.47134 * 179.97438 * 19 17 2 21 21 C 1.76199 * 99.99820 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00249 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99883 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00023 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99928 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47019 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47024 * 119.99890 * 25 23 21 28 28 H 1.48497 * 109.46935 * 240.00364 * 25 23 21 29 29 H 1.09001 * 109.47288 * 90.00548 * 1 2 3 30 30 H 1.09000 * 109.46840 * 210.00166 * 1 2 3 31 31 H 1.09002 * 109.47259 * 330.00051 * 1 2 3 32 32 H 1.09000 * 109.46851 * 210.00362 * 3 2 1 33 33 H 1.09002 * 109.46737 * 329.99967 * 3 2 1 34 34 H 1.08998 * 109.47093 * 300.00258 * 4 3 2 35 35 H 1.09002 * 109.46874 * 60.00505 * 4 3 2 36 36 H 1.09003 * 109.46812 * 95.19799 * 6 5 4 37 37 H 1.08999 * 109.47156 * 215.19832 * 6 5 4 38 38 H 1.09003 * 109.47034 * 335.19933 * 6 5 4 39 39 H 1.09005 * 110.48670 * 335.78083 * 11 9 7 40 40 H 1.08990 * 110.49118 * 98.42628 * 11 9 7 41 41 H 1.09000 * 110.75455 * 279.61998 * 12 11 9 42 42 H 1.09002 * 110.91386 * 156.33131 * 12 11 9 43 43 H 1.09000 * 110.03436 * 238.56811 * 16 9 7 44 44 H 1.09009 * 110.03197 * 359.95472 * 16 9 7 45 45 H 1.08997 * 109.46929 * 299.99641 * 19 17 2 46 46 H 1.08996 * 109.47318 * 59.99441 * 19 17 2 47 47 H 0.96997 * 119.99630 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 7 3.1855 2.9789 1.4424 6 6 2.4534 4.2479 1.4421 7 6 4.5332 2.9784 1.4425 8 8 5.1392 1.9318 1.3504 9 6 5.2872 4.2782 1.5572 10 1 4.6632 5.0302 2.0399 11 6 5.7164 4.7653 0.1578 12 6 7.1159 5.3887 0.3854 13 6 7.7495 4.4351 1.4286 14 1 8.1420 3.5428 0.9410 15 9 8.7600 5.0900 2.1407 16 6 6.5798 4.0683 2.3652 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3854 -2.4723 0.0005 20 16 2.5616 -3.8481 0.0005 21 6 1.4415 -5.2082 0.0013 22 1 0.3762 -5.0305 0.0012 23 6 1.9283 -6.5081 0.0010 24 7 3.2266 -6.7247 0.0006 25 14 0.7408 -7.9501 0.0011 26 1 -0.6547 -7.4422 0.0009 27 1 0.9662 -8.7770 -1.2116 28 1 0.9668 -8.7773 1.2134 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.1499 1.1383 -0.5139 33 1 1.6084 2.0283 -0.5139 34 1 1.5000 1.8408 1.9562 35 1 3.0416 0.9508 1.9563 36 1 2.3525 4.6093 2.4655 37 1 2.9994 4.9822 0.8497 38 1 1.4638 4.0964 1.0109 39 1 5.7807 3.9263 -0.5351 40 1 5.0202 5.5165 -0.2149 41 1 7.0284 6.3980 0.7876 42 1 7.6956 5.3913 -0.5377 43 1 6.5834 4.7191 3.2396 44 1 6.6614 3.0264 2.6751 45 1 0.7585 -2.5299 0.8903 46 1 0.7590 -2.5303 -0.8896 47 1 3.5667 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704875708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:13 Heat of formation + Delta-G solvation = -149.752117 kcal Electronic energy + Delta-G solvation = -28083.122385 eV Core-core repulsion = 23919.358328 eV Total energy + Delta-G solvation = -4163.764056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.63388 -41.47222 -40.74656 -38.03615 -37.13676 -36.23168 -34.60349 -32.41410 -30.53828 -29.80233 -29.10818 -27.72233 -27.71139 -27.10759 -24.67141 -22.29980 -22.00210 -20.69205 -19.84048 -19.56289 -18.69501 -18.10892 -17.59212 -17.28214 -17.06575 -17.03612 -16.89548 -16.38919 -16.11754 -15.71094 -15.64112 -15.04881 -14.75696 -14.49313 -14.46108 -14.43624 -14.17298 -14.07763 -13.96310 -13.57855 -13.28867 -13.20168 -13.15485 -13.11258 -12.98597 -12.91635 -12.69287 -12.60845 -12.39010 -12.09423 -11.85356 -11.70743 -11.66832 -11.50772 -11.17554 -10.96358 -10.77230 -10.27227 -10.12671 -9.46074 -8.70835 -8.35973 -6.15523 1.23021 1.40761 1.42935 1.50030 1.56082 1.58265 1.83158 2.25120 2.30250 2.98068 3.25098 3.25991 3.34134 3.46851 3.63436 3.69682 3.94798 4.00749 4.09734 4.16316 4.20312 4.25990 4.30507 4.32028 4.32746 4.37644 4.42492 4.45243 4.64827 4.67738 4.70795 4.76688 4.81394 4.91955 4.92794 4.96872 5.01890 5.06914 5.13142 5.27424 5.39984 5.40871 5.62488 6.18301 6.23368 6.35775 7.04638 7.13937 7.17050 8.73815 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.002081 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.870913 B =13454.928856 C =14697.072490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.111 3.889 4 C 0.107 3.893 5 N -0.612 5.612 6 C 0.066 3.934 7 C 0.503 3.497 8 O -0.584 6.584 9 C -0.099 4.099 10 H 0.138 0.862 11 C -0.104 4.104 12 C -0.135 4.135 13 C 0.075 3.925 14 H 0.078 0.922 15 F -0.222 7.222 16 C -0.140 4.140 17 C 0.523 3.477 18 O -0.564 6.564 19 C -0.119 4.119 20 S -0.165 6.165 21 C -0.542 4.542 22 H 0.086 0.914 23 C 0.009 3.991 24 N -0.914 5.914 25 Si 1.003 2.997 26 H -0.253 1.253 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.041 0.959 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 33.132 2.011 34.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.345 5.345 3 C -0.013 4.013 4 C -0.017 4.017 5 N -0.345 5.345 6 C -0.074 4.074 7 C 0.292 3.708 8 O -0.463 6.463 9 C -0.120 4.120 10 H 0.156 0.844 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.039 3.961 14 H 0.096 0.904 15 F -0.203 7.203 16 C -0.178 4.178 17 C 0.310 3.690 18 O -0.441 6.441 19 C -0.270 4.270 20 S 0.062 5.938 21 C -0.689 4.689 22 H 0.104 0.896 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.177 1.177 27 H -0.199 1.199 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.137 0.863 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.450 32.521 1.984 33.034 hybrid contribution -1.131 -1.672 0.143 2.024 sum -6.581 30.849 2.128 31.615 Atomic orbital electron populations 1.22173 0.76092 1.05199 1.03631 1.47802 1.08777 1.04229 1.73724 1.21761 0.97127 0.84983 0.97433 1.21705 0.97403 0.85671 0.96968 1.47950 1.05386 1.08116 1.73076 1.22249 0.98259 0.83139 1.03801 1.21419 0.82764 0.91641 0.74993 1.90821 1.68965 1.35997 1.50564 1.21962 0.96376 0.94213 0.99478 0.84425 1.22266 0.97376 1.00991 0.93544 1.23043 0.95704 0.99577 0.98930 1.22598 0.85355 0.95820 0.92371 0.90378 1.92774 1.63444 1.83306 1.80799 1.22667 0.93032 1.02916 0.99172 1.20318 0.87323 0.85873 0.75442 1.90750 1.16076 1.87456 1.49862 1.23350 1.02476 0.94647 1.06514 1.85767 1.13147 0.97801 1.97040 1.23218 0.94569 0.92402 1.58741 0.89635 1.26216 0.97674 1.01884 0.93729 1.70215 1.14299 1.22414 1.48113 0.84849 0.78163 0.76509 0.78049 1.17660 1.19931 1.19963 0.90944 0.90757 0.87178 0.94070 0.86078 0.86685 0.94742 0.90660 0.88875 0.88355 0.92784 0.86323 0.87775 0.89285 0.88175 0.92477 0.87144 0.87255 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.24 127.77 1.31 2.39 16 2 N -0.61 -16.43 2.87 -846.75 -2.43 -18.86 16 3 C 0.11 2.62 5.73 86.38 0.49 3.11 16 4 C 0.11 2.36 5.67 86.38 0.49 2.85 16 5 N -0.61 -10.50 2.87 -846.74 -2.43 -12.93 16 6 C 0.07 0.29 9.59 127.77 1.22 1.51 16 7 C 0.50 11.93 6.50 87.66 0.57 12.50 16 8 O -0.58 -22.18 15.51 -3.05 -0.05 -22.22 16 9 C -0.10 -1.39 2.43 -10.81 -0.03 -1.42 16 10 H 0.14 0.82 6.67 -2.39 -0.02 0.81 16 11 C -0.10 -1.15 6.19 31.67 0.20 -0.95 16 12 C -0.13 -1.51 6.70 31.88 0.21 -1.30 16 13 C 0.07 1.37 4.66 31.67 0.15 1.52 16 14 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 15 F -0.22 -4.77 17.17 44.97 0.77 -4.00 16 16 C -0.14 -2.57 6.12 31.32 0.19 -2.38 16 17 C 0.52 21.16 7.69 87.66 0.67 21.83 16 18 O -0.56 -29.50 15.44 -3.02 -0.05 -29.54 16 19 C -0.12 -4.95 4.71 71.24 0.34 -4.61 16 20 S -0.16 -9.63 20.57 -56.49 -1.16 -10.79 16 21 C -0.54 -31.65 9.50 67.96 0.65 -31.01 16 22 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 23 C 0.01 0.54 5.49 84.86 0.47 1.01 16 24 N -0.91 -57.90 13.22 21.65 0.29 -57.61 16 25 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 26 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.22 6.44 -2.39 -0.02 1.21 16 31 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.04 1.39 7.42 -2.39 -0.02 1.37 16 33 H 0.12 1.66 8.07 -2.39 -0.02 1.65 16 34 H 0.12 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.03 1.16 7.50 -2.39 -0.02 1.15 16 36 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.09 0.05 6.66 -2.39 -0.02 0.03 16 38 H 0.10 0.05 8.03 -2.39 -0.02 0.03 16 39 H 0.05 0.91 7.85 -2.38 -0.02 0.89 16 40 H 0.12 0.44 7.96 -2.39 -0.02 0.42 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 1.45 8.11 -2.39 -0.02 1.43 16 44 H 0.06 1.47 6.94 -2.38 -0.02 1.46 16 45 H 0.11 4.09 7.40 -2.40 -0.02 4.08 16 46 H 0.11 4.07 8.11 -2.40 -0.02 4.05 16 47 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -96.17 399.88 4.86 -91.32 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.96 Total: 13.21 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.93 Total: 5.06 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -4.58 Total: -89.40 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.09 Total: -51.77 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.77 Total: -4.00 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.16 Total: -10.79 kcal Total: -96.17 4.86 -91.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704875708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.434 kcal (2) G-P(sol) polarization free energy of solvation -96.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds