Wall clock time and date at job start Wed Apr 1 2020 03:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99525 * 2 1 4 4 C 1.53007 * 109.46559 * 269.99918 * 3 2 1 5 5 N 1.46908 * 109.46598 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99551 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46849 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00062 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00158 * 180.02562 * 7 6 5 10 10 C 1.37091 * 120.00362 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00301 * 359.97438 * 10 9 7 12 12 C 1.38952 * 120.00461 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99546 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47445 * 59.99714 * 14 12 10 16 16 H 1.48501 * 109.47385 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46982 * 299.99888 * 14 12 10 18 18 C 1.34773 * 120.00488 * 179.97438 * 2 1 3 19 19 O 1.21572 * 120.00320 * 184.86904 * 18 2 1 20 20 C 1.47717 * 119.99750 * 4.86713 * 18 2 1 21 21 C 1.40260 * 119.88232 * 140.35532 * 20 18 2 22 22 C 1.36159 * 120.56066 * 179.97438 * 21 20 18 23 23 C 1.39905 * 119.97424 * 0.02562 * 22 21 20 24 24 N 1.34758 * 134.59092 * 180.02562 * 23 22 21 25 25 N 1.28649 * 109.29099 * 179.97438 * 24 23 22 26 26 N 1.28809 * 111.79116 * 359.97438 * 25 24 23 27 27 H 0.96999 * 125.94086 * 179.97438 * 26 25 24 28 28 C 1.37367 * 108.11634 * 359.78822 * 26 25 24 29 29 C 1.38621 * 134.88371 * 179.55303 * 28 26 25 30 30 H 1.09002 * 109.47097 * 265.91607 * 1 2 3 31 31 H 1.08998 * 109.47545 * 25.91892 * 1 2 3 32 32 H 1.09001 * 109.46712 * 145.92604 * 1 2 3 33 33 H 1.09000 * 109.47496 * 29.99454 * 3 2 1 34 34 H 1.08996 * 109.47175 * 149.99971 * 3 2 1 35 35 H 1.08992 * 109.47008 * 299.99645 * 4 3 2 36 36 H 1.08996 * 109.47334 * 60.00150 * 4 3 2 37 37 H 1.00900 * 111.00009 * 56.04410 * 5 4 3 38 38 H 1.08997 * 109.47213 * 300.00140 * 6 5 4 39 39 H 1.09002 * 109.47198 * 60.00222 * 6 5 4 40 40 H 0.97006 * 119.99818 * 0.02562 * 9 7 6 41 41 H 0.97007 * 119.99771 * 179.97438 * 13 12 10 42 42 H 1.08001 * 119.71872 * 0.02562 * 21 20 18 43 43 H 1.07993 * 120.01204 * 180.02562 * 22 21 20 44 44 H 1.08005 * 120.24700 * 0.63560 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 7 3.1873 2.9824 -1.4426 6 6 3.4510 3.4379 -2.8141 7 6 4.2041 4.7426 -2.7740 8 8 4.4932 5.2435 -1.7078 9 7 4.5565 5.3530 -3.9227 10 6 5.2421 6.5396 -3.8863 11 1 5.4995 6.9856 -2.9369 12 6 5.6049 7.1692 -5.0707 13 7 5.2912 6.6268 -6.2258 14 14 6.5384 8.7864 -5.0209 15 1 7.8268 8.5926 -4.3084 16 1 6.8044 9.2473 -6.4073 17 1 5.7265 9.8048 -4.3074 18 6 2.1390 -1.1671 0.0005 19 8 3.3514 -1.1689 0.0899 20 6 1.4045 -2.4442 -0.1074 21 6 1.9235 -3.4847 -0.8917 22 6 1.2582 -4.6677 -1.0005 23 6 0.0460 -4.8524 -0.3271 24 7 -0.8353 -5.8669 -0.2263 25 7 -1.8076 -5.5110 0.5372 26 7 -1.6565 -4.3091 0.9751 27 1 -2.2659 -3.8368 1.5636 28 6 -0.4800 -3.8142 0.4672 29 6 0.2000 -2.6106 0.5695 30 1 -0.3633 -0.0732 1.0251 31 1 -0.3634 0.9243 -0.4492 32 1 -0.3633 -0.8513 -0.5758 33 1 1.6083 2.0285 0.5137 34 1 3.1498 1.1386 0.5138 35 1 3.0415 0.9508 -1.9563 36 1 1.5000 1.8406 -1.9564 37 1 4.0448 2.9046 -0.9166 38 1 4.0469 2.6900 -3.3372 39 1 2.5057 3.5805 -3.3377 40 1 4.3250 4.9526 -4.7755 41 1 5.5442 7.0664 -7.0527 42 1 2.8592 -3.3467 -1.4131 43 1 1.6662 -5.4631 -1.6065 44 1 -0.1999 -1.8094 1.1734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731982985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:44 Heat of formation + Delta-G solvation = 61.015797 kcal Electronic energy + Delta-G solvation = -28381.833734 eV Core-core repulsion = 24143.978021 eV Total energy + Delta-G solvation = -4237.855712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.77694 -40.68602 -38.34902 -37.97832 -36.54684 -35.18698 -34.40488 -33.82626 -31.60048 -31.25203 -31.20500 -29.55244 -27.42982 -26.32983 -25.03602 -24.22734 -23.57625 -23.04718 -22.23984 -20.41305 -19.23625 -19.02893 -18.45146 -17.89868 -17.44760 -16.83021 -16.49251 -16.40719 -15.78526 -15.53842 -15.33261 -15.08063 -14.71438 -14.47308 -14.09406 -13.77792 -13.62320 -13.47948 -13.33845 -13.17735 -12.85020 -12.76451 -12.62188 -12.35098 -12.23780 -12.09210 -11.74954 -11.55143 -11.50731 -11.33273 -11.16713 -10.98755 -10.44254 -10.37000 -10.21423 -9.58652 -9.50197 -9.13144 -9.02064 -8.47995 -8.11218 -7.96465 -6.41749 -3.82669 -0.23941 0.60665 1.56815 1.88277 2.27762 2.50577 3.06499 3.20324 3.26013 3.30478 3.37558 3.87838 3.90653 3.95317 4.12449 4.30294 4.34277 4.38363 4.48525 4.65141 4.76367 4.81521 4.90120 5.08251 5.15047 5.18071 5.21092 5.26159 5.31098 5.42449 5.54639 5.61840 5.72710 5.79786 5.82037 5.96055 5.96247 6.08996 6.17395 6.26133 6.88303 7.13395 7.54961 7.59165 7.67613 7.69331 8.05762 8.60961 9.17541 9.53893 10.05311 10.75874 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.030015 B = 0.001531 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.637077 B =18283.304475 C =18524.174667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.606 5.606 3 C 0.116 3.884 4 C 0.045 3.955 5 N -0.666 5.666 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.558 3.442 19 O -0.520 6.520 20 C -0.088 4.088 21 C -0.070 4.070 22 C -0.051 4.051 23 C 0.026 3.974 24 N -0.250 5.250 25 N -0.008 5.008 26 N -0.414 5.414 27 H 0.454 0.546 28 C 0.018 3.982 29 C -0.074 4.074 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.352 0.648 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 -22.293 11.678 29.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.007 4.007 4 C -0.085 4.085 5 N -0.299 5.299 6 C -0.080 4.080 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.759 3.241 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.346 3.654 19 O -0.395 6.395 20 C -0.095 4.095 21 C -0.091 4.091 22 C -0.073 4.073 23 C -0.099 4.099 24 N -0.126 5.126 25 N 0.010 4.990 26 N -0.142 5.142 27 H 0.301 0.699 28 C -0.102 4.102 29 C -0.096 4.096 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.429 -22.778 12.266 30.646 hybrid contribution 0.991 1.189 -0.516 1.632 sum -15.437 -21.589 11.750 29.025 Atomic orbital electron populations 1.22218 0.79453 1.04282 1.01595 1.47716 1.07158 1.06018 1.73038 1.21513 0.98493 0.83239 0.97434 1.22261 0.99186 0.90742 0.96360 1.60025 1.28438 1.27679 1.13806 1.21655 1.00251 0.96165 0.89957 1.19780 0.85245 0.87327 0.85054 1.90522 1.59330 1.67259 1.29639 1.41849 1.49958 1.21384 1.06763 1.19665 1.31047 0.97774 0.94541 0.87940 1.25266 0.98145 0.99873 0.94629 1.69608 1.47057 1.40147 0.97497 0.85906 0.79826 0.81349 0.77060 1.19906 1.20984 1.19888 1.18174 0.87087 0.83259 0.76911 1.90857 1.13231 1.86896 1.48537 1.19789 0.94414 0.95369 0.99892 1.20829 1.00046 0.90988 0.97282 1.19998 0.91107 0.97990 0.98227 1.20124 0.97991 0.90929 1.00893 1.75422 0.99729 1.23572 1.13898 1.78012 1.18528 0.95539 1.06894 1.44888 1.18279 1.11976 1.39085 0.69869 1.19623 0.90446 0.98088 1.02005 1.20506 0.93699 0.94639 1.00755 0.92146 0.89978 0.90528 0.88932 0.89263 0.95072 0.91024 0.82897 0.93756 0.89624 0.77451 0.91819 0.83389 0.83451 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 8.88 59.85 0.53 0.84 16 2 N -0.61 -5.03 2.87 -182.73 -0.53 -5.55 16 3 C 0.12 1.17 5.69 -4.04 -0.02 1.14 16 4 C 0.05 0.54 6.01 -3.82 -0.02 0.52 16 5 N -0.67 -10.54 6.13 -115.05 -0.70 -11.25 16 6 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 7 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 8 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.41 9.68 -14.94 -0.14 -8.55 16 11 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.56 5.62 7.33 -12.39 -0.09 5.53 16 19 O -0.52 -7.29 16.46 5.30 0.09 -7.20 16 20 C -0.09 -0.68 5.23 -104.92 -0.55 -1.22 16 21 C -0.07 -0.52 9.54 -39.57 -0.38 -0.89 16 22 C -0.05 -0.36 10.03 -39.71 -0.40 -0.76 16 23 C 0.03 0.22 7.36 -84.95 -0.63 -0.40 16 24 N -0.25 -2.48 12.42 32.09 0.40 -2.08 16 25 N -0.01 -0.06 13.28 60.35 0.80 0.74 16 26 N -0.41 -2.08 7.08 32.31 0.23 -1.85 16 27 H 0.45 0.34 8.96 -190.24 -1.71 -1.36 16 28 C 0.02 0.12 7.40 -84.24 -0.62 -0.50 16 29 C -0.07 -0.41 7.57 -39.10 -0.30 -0.70 16 30 H 0.06 0.15 6.91 -51.93 -0.36 -0.21 16 31 H 0.08 0.34 8.04 -51.93 -0.42 -0.08 16 32 H 0.08 0.29 5.80 -51.93 -0.30 -0.01 16 33 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.09 1.04 7.36 -51.93 -0.38 0.66 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.35 5.86 8.43 -39.29 -0.33 5.52 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.15 1.02 8.05 -52.49 -0.42 0.60 16 43 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.15 0.43 5.33 -52.48 -0.28 0.15 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -36.21 378.38 -7.68 -43.88 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.56 Total: 8.75 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.83 Total: 6.71 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.87 Total: -58.13 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.21 -7.68 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731982985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.900 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds