Wall clock time and date at job start Wed Apr 1 2020 04:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00222 * 2 1 4 4 H 1.48507 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47178 * 299.99626 * 3 2 1 6 6 H 1.48503 * 109.47179 * 60.00234 * 3 2 1 7 7 C 1.38821 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99729 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.46257 * 155.00064 * 10 9 7 12 12 C 1.53187 * 109.31575 * 181.37956 * 11 10 9 13 13 N 1.46923 * 108.77863 * 305.36920 * 12 11 10 14 14 C 1.34774 * 120.62774 * 233.58286 * 13 12 11 15 15 O 1.21279 * 120.00472 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00020 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38250 * 119.94789 * 89.99392 * 17 16 14 19 19 C 1.38190 * 120.11592 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.06842 * 359.92622 * 19 18 17 21 21 C 1.38971 * 119.81560 * 359.96226 * 20 19 18 22 22 C 1.38194 * 119.94026 * 269.72161 * 17 16 14 23 23 O 1.36108 * 120.78304 * 180.21382 * 21 20 19 24 24 C 1.43184 * 116.69573 * 342.70974 * 23 21 20 25 25 C 1.53465 * 108.23485 * 46.25628 * 24 23 21 26 26 O 1.36103 * 119.39662 * 179.81767 * 20 19 18 27 27 C 1.46923 * 118.74019 * 53.85328 * 13 12 11 28 28 C 1.53045 * 109.45998 * 275.06723 * 10 9 7 29 29 H 0.97009 * 120.00076 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00639 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46348 * 35.02245 * 10 9 7 32 32 H 1.09001 * 109.49823 * 61.43058 * 11 10 9 33 33 H 1.09002 * 109.52483 * 301.35343 * 11 10 9 34 34 H 1.09002 * 109.59040 * 185.57134 * 12 11 10 35 35 H 1.09002 * 109.70216 * 65.22350 * 12 11 10 36 36 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 37 37 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 38 38 H 1.07997 * 119.93853 * 0.03883 * 18 17 16 39 39 H 1.07997 * 119.97185 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.96692 * 0.03310 * 22 17 16 41 41 H 1.08996 * 109.70604 * 286.57070 * 24 23 21 42 42 H 1.08996 * 109.70851 * 165.94298 * 24 23 21 43 43 H 1.08998 * 109.70969 * 180.57471 * 25 24 23 44 44 H 1.09000 * 109.74389 * 59.96781 * 25 24 23 45 45 H 1.09006 * 109.58416 * 65.93051 * 27 13 12 46 46 H 1.08998 * 109.58688 * 186.35006 * 27 13 12 47 47 H 1.09007 * 109.49637 * 298.56494 * 28 10 9 48 48 H 1.08998 * 109.49728 * 58.66026 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.1802 -4.7517 0.6135 12 6 1.9616 -6.0690 0.6446 13 7 2.4411 -6.3666 -0.7119 14 6 2.1731 -7.5543 -1.2897 15 8 1.5309 -8.3897 -0.6892 16 6 2.6714 -7.8445 -2.6821 17 6 2.2395 -9.2289 -3.0919 18 6 1.0297 -9.4122 -3.7355 19 6 0.6300 -10.6802 -4.1124 20 6 1.4426 -11.7726 -3.8472 21 6 2.6597 -11.5880 -3.2022 22 6 3.0559 -10.3123 -2.8287 23 8 3.4743 -12.6454 -2.9361 24 6 2.8787 -13.9463 -2.9915 25 6 2.0378 -14.0353 -4.2722 26 8 1.0337 -13.0158 -4.2211 27 6 3.2234 -5.3472 -1.4242 28 6 2.4232 -4.0360 -1.4343 29 1 -0.4851 0.8401 0.0004 30 1 0.3554 -2.3881 0.0016 31 1 2.9683 -3.5501 0.5924 32 1 0.2812 -4.8763 0.0099 33 1 0.9006 -4.4704 1.6288 34 1 1.3095 -6.8727 0.9864 35 1 2.8117 -5.9760 1.3205 36 1 2.2556 -7.1142 -3.3763 37 1 3.7595 -7.7831 -2.6987 38 1 0.3962 -8.5628 -3.9443 39 1 -0.3157 -10.8207 -4.6147 40 1 4.0023 -10.1660 -2.3292 41 1 2.2398 -14.0954 -2.1211 42 1 3.6588 -14.7072 -3.0103 43 1 1.5640 -15.0150 -4.3335 44 1 2.6751 -13.8800 -5.1427 45 1 4.1745 -5.1941 -0.9141 46 1 3.4041 -5.6746 -2.4480 47 1 1.5124 -4.1673 -2.0186 48 1 3.0287 -3.2449 -1.8765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997256708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:13 Heat of formation + Delta-G solvation = -69.599360 kcal Electronic energy + Delta-G solvation = -29838.669778 eV Core-core repulsion = 25666.397759 eV Total energy + Delta-G solvation = -4172.272018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50181 -40.13285 -38.24113 -37.50575 -37.13583 -34.47905 -32.90661 -31.97869 -31.17026 -30.80854 -29.69777 -29.15779 -27.22694 -25.05408 -24.51575 -23.06916 -22.96370 -22.43643 -20.98292 -20.16513 -19.01423 -18.61959 -17.54466 -17.46818 -17.16649 -16.98261 -15.84602 -15.65961 -15.36966 -15.25868 -14.84455 -14.68305 -14.51889 -14.30587 -14.07887 -13.85644 -13.75261 -13.48614 -13.37254 -13.25218 -13.08465 -12.51969 -12.21070 -12.06937 -11.83263 -11.75639 -11.56427 -11.40799 -11.32035 -10.98279 -10.89221 -10.83270 -10.74276 -10.49106 -10.21902 -9.84074 -9.72056 -9.66813 -8.93884 -8.78654 -8.47364 -8.20998 -7.00118 -5.79998 -3.09208 1.06627 1.14270 2.69175 2.72569 2.91301 3.11034 3.40527 3.46047 3.48490 3.55934 3.87279 4.37150 4.41411 4.48238 4.54724 4.55285 4.67136 4.76998 4.92651 5.05367 5.05866 5.14361 5.15763 5.28523 5.33612 5.34671 5.36613 5.42002 5.52406 5.62691 5.70261 5.71870 5.89242 5.94297 5.96244 6.01440 6.22166 6.33267 6.35661 6.39321 6.43535 6.50380 6.61734 6.63016 6.88501 7.02422 7.16309 7.53424 7.66620 8.27464 8.38188 9.49539 10.07263 10.41822 11.42572 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.001818 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.732958 B =15398.530446 C =15530.342776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.607 5.607 14 C 0.515 3.485 15 O -0.541 6.541 16 C -0.100 4.100 17 C -0.057 4.057 18 C -0.098 4.098 19 C -0.111 4.111 20 C 0.046 3.954 21 C 0.050 3.950 22 C -0.098 4.098 23 O -0.309 6.309 24 C 0.021 3.979 25 C 0.021 3.979 26 O -0.309 6.309 27 C 0.105 3.895 28 C -0.151 4.151 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -27.220 -9.226 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.341 5.341 14 C 0.303 3.697 15 O -0.418 6.418 16 C -0.139 4.139 17 C -0.057 4.057 18 C -0.116 4.116 19 C -0.130 4.130 20 C 0.002 3.998 21 C 0.005 3.995 22 C -0.116 4.116 23 O -0.223 6.223 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.224 6.224 27 C -0.018 4.018 28 C -0.192 4.192 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.857 -27.562 -8.881 29.758 hybrid contribution 0.185 0.855 -0.065 0.877 sum 7.042 -26.707 -8.947 29.032 Atomic orbital electron populations 1.69673 1.05130 1.25570 1.57616 1.24758 0.95505 0.97729 1.02994 0.86136 0.78766 0.84193 0.77191 1.20553 1.21900 1.21891 1.19277 0.90997 0.84087 1.42713 0.91097 1.42446 1.05821 0.99718 1.88481 1.20169 0.94454 0.86083 0.92476 1.22199 0.99201 0.94144 1.02197 1.21596 0.98683 0.98004 0.82335 1.48183 1.54002 1.14864 1.17031 1.20425 0.79975 0.81482 0.87797 1.90700 1.40118 1.46012 1.64951 1.20679 1.03123 0.94904 0.95231 1.19021 0.94552 0.93576 0.98584 1.20782 0.95697 0.96525 0.98618 1.20368 1.00289 0.89811 1.02489 1.18870 0.95068 0.85679 1.00229 1.18759 0.91577 0.88567 1.00587 1.20194 1.01298 0.88960 1.01192 1.86300 1.35933 1.13401 1.86703 1.23615 0.99372 0.84176 0.98350 1.23606 0.91573 0.92119 0.98178 1.86305 1.35404 1.16166 1.84478 1.21984 0.94501 0.88860 0.96438 1.22752 1.00000 0.94705 1.01745 0.93540 0.78265 0.93435 0.91854 0.90624 0.89441 0.91681 0.87464 0.87839 0.84983 0.84756 0.84989 0.90473 0.86146 0.86188 0.90557 0.91379 0.90388 0.92125 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.48 5.12 -53.38 -0.27 -17.75 16 10 C 0.18 3.31 2.73 -67.89 -0.19 3.13 16 11 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 12 C 0.12 1.65 6.43 -3.71 -0.02 1.63 16 13 N -0.61 -8.13 2.97 -172.51 -0.51 -8.64 16 14 C 0.52 7.09 7.69 -10.98 -0.08 7.01 16 15 O -0.54 -9.41 15.45 5.56 0.09 -9.32 16 16 C -0.10 -1.01 4.17 -29.03 -0.12 -1.13 16 17 C -0.06 -0.65 4.37 -104.63 -0.46 -1.11 16 18 C -0.10 -1.09 9.69 -39.59 -0.38 -1.47 16 19 C -0.11 -1.24 9.96 -39.42 -0.39 -1.63 16 20 C 0.05 0.55 6.49 -39.14 -0.25 0.29 16 21 C 0.05 0.60 6.49 -39.14 -0.25 0.35 16 22 C -0.10 -1.15 9.61 -39.42 -0.38 -1.53 16 23 O -0.31 -3.35 10.42 -32.87 -0.34 -3.69 16 24 C 0.02 0.14 7.26 37.40 0.27 0.41 16 25 C 0.02 0.14 7.26 37.40 0.27 0.41 16 26 O -0.31 -3.26 10.42 -32.85 -0.34 -3.60 16 27 C 0.11 1.26 6.37 -3.49 -0.02 1.23 16 28 C -0.15 -2.39 5.67 -26.39 -0.15 -2.54 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 10.01 7.80 -40.82 -0.32 9.69 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.91 7.65 -51.93 -0.40 0.51 16 37 H 0.10 0.81 7.87 -51.93 -0.41 0.40 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 47 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 48 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -34.27 389.56 -9.63 -43.90 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.26 Total: 7.74 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.56 Total: -4.40 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.06 Total: -53.41 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.60 Total: -16.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.27 -9.63 -43.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.701 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds