Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00222 * 2 1 4 4 H 1.48507 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47178 * 299.99626 * 3 2 1 6 6 H 1.48503 * 109.47179 * 60.00234 * 3 2 1 7 7 C 1.38821 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99729 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.46257 * 155.00064 * 10 9 7 12 12 C 1.53187 * 109.31575 * 181.37956 * 11 10 9 13 13 N 1.46923 * 108.77863 * 305.36920 * 12 11 10 14 14 C 1.34774 * 120.62774 * 233.58286 * 13 12 11 15 15 O 1.21279 * 120.00472 * 359.97438 * 14 13 12 16 16 C 1.50706 * 120.00020 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47294 * 180.02562 * 16 14 13 18 18 C 1.38250 * 119.94789 * 89.99392 * 17 16 14 19 19 C 1.38190 * 120.11592 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.06842 * 359.92622 * 19 18 17 21 21 C 1.38971 * 119.81560 * 359.96226 * 20 19 18 22 22 C 1.38194 * 119.94026 * 269.72161 * 17 16 14 23 23 O 1.36108 * 120.78304 * 180.21382 * 21 20 19 24 24 C 1.43184 * 116.69573 * 342.70974 * 23 21 20 25 25 C 1.53465 * 108.23485 * 46.25628 * 24 23 21 26 26 O 1.36103 * 119.39662 * 179.81767 * 20 19 18 27 27 C 1.46923 * 118.74019 * 53.85328 * 13 12 11 28 28 C 1.53045 * 109.45998 * 275.06723 * 10 9 7 29 29 H 0.97009 * 120.00076 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00639 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.46348 * 35.02245 * 10 9 7 32 32 H 1.09001 * 109.49823 * 61.43058 * 11 10 9 33 33 H 1.09002 * 109.52483 * 301.35343 * 11 10 9 34 34 H 1.09002 * 109.59040 * 185.57134 * 12 11 10 35 35 H 1.09002 * 109.70216 * 65.22350 * 12 11 10 36 36 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 37 37 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 38 38 H 1.07997 * 119.93853 * 0.03883 * 18 17 16 39 39 H 1.07997 * 119.97185 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.96692 * 0.03310 * 22 17 16 41 41 H 1.08996 * 109.70604 * 286.57070 * 24 23 21 42 42 H 1.08996 * 109.70851 * 165.94298 * 24 23 21 43 43 H 1.08998 * 109.70969 * 180.57471 * 25 24 23 44 44 H 1.09000 * 109.74389 * 59.96781 * 25 24 23 45 45 H 1.09006 * 109.58416 * 65.93051 * 27 13 12 46 46 H 1.08998 * 109.58688 * 186.35006 * 27 13 12 47 47 H 1.09007 * 109.49637 * 298.56494 * 28 10 9 48 48 H 1.08998 * 109.49728 * 58.66026 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.1802 -4.7517 0.6135 12 6 1.9616 -6.0690 0.6446 13 7 2.4411 -6.3666 -0.7119 14 6 2.1731 -7.5543 -1.2897 15 8 1.5309 -8.3897 -0.6892 16 6 2.6714 -7.8445 -2.6821 17 6 2.2395 -9.2289 -3.0919 18 6 1.0297 -9.4122 -3.7355 19 6 0.6300 -10.6802 -4.1124 20 6 1.4426 -11.7726 -3.8472 21 6 2.6597 -11.5880 -3.2022 22 6 3.0559 -10.3123 -2.8287 23 8 3.4743 -12.6454 -2.9361 24 6 2.8787 -13.9463 -2.9915 25 6 2.0378 -14.0353 -4.2722 26 8 1.0337 -13.0158 -4.2211 27 6 3.2234 -5.3472 -1.4242 28 6 2.4232 -4.0360 -1.4343 29 1 -0.4851 0.8401 0.0004 30 1 0.3554 -2.3881 0.0016 31 1 2.9683 -3.5501 0.5924 32 1 0.2812 -4.8763 0.0099 33 1 0.9006 -4.4704 1.6288 34 1 1.3095 -6.8727 0.9864 35 1 2.8117 -5.9760 1.3205 36 1 2.2556 -7.1142 -3.3763 37 1 3.7595 -7.7831 -2.6987 38 1 0.3962 -8.5628 -3.9443 39 1 -0.3157 -10.8207 -4.6147 40 1 4.0023 -10.1660 -2.3292 41 1 2.2398 -14.0954 -2.1211 42 1 3.6588 -14.7072 -3.0103 43 1 1.5640 -15.0150 -4.3335 44 1 2.6751 -13.8800 -5.1427 45 1 4.1745 -5.1941 -0.9141 46 1 3.4041 -5.6746 -2.4480 47 1 1.5124 -4.1673 -2.0186 48 1 3.0287 -3.2449 -1.8765 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997256708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = -91.398612 kcal Electronic energy + Delta-G solvation = -29839.615064 eV Core-core repulsion = 25666.397759 eV Total energy + Delta-G solvation = -4173.217305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23318 -41.20656 -39.18908 -38.32069 -38.23104 -36.09384 -34.01257 -33.43765 -32.05328 -31.82006 -31.00273 -30.25948 -28.12590 -26.45796 -25.43840 -24.36787 -24.10701 -23.55151 -21.93985 -21.28641 -20.06889 -19.49113 -19.01986 -18.31481 -18.21808 -18.06074 -16.84218 -16.68563 -16.44641 -16.29730 -15.99850 -15.45849 -15.45216 -15.37797 -15.32954 -15.05077 -14.87155 -14.85177 -14.68089 -14.22133 -13.92354 -13.82030 -13.31613 -13.09515 -13.02034 -12.86309 -12.70997 -12.60151 -12.52995 -12.16497 -12.08366 -12.06524 -11.99341 -11.96333 -11.67321 -11.43830 -11.26975 -10.95082 -10.73966 -9.61818 -9.59854 -9.01819 -8.97960 -7.91479 -5.19850 0.23661 0.31705 1.49681 1.50136 1.59891 1.67680 1.97714 2.12950 2.30141 2.58483 2.70961 3.29919 3.42274 3.65349 3.67304 3.72727 3.85549 3.93399 4.01339 4.08382 4.11100 4.14086 4.23761 4.29912 4.36243 4.40504 4.46201 4.49653 4.57146 4.59953 4.66293 4.68730 4.84290 4.87507 4.90244 4.94167 5.07322 5.09272 5.13347 5.16203 5.35432 5.52983 5.53872 5.58524 5.65135 5.68625 5.90328 6.30388 6.40858 6.49159 7.22271 7.36338 8.12914 8.35360 9.32447 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.031427 B = 0.001818 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.732958 B =15398.530446 C =15530.342776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.171 3.829 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.608 5.608 14 C 0.514 3.486 15 O -0.582 6.582 16 C -0.093 4.093 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.123 4.123 20 C 0.034 3.966 21 C 0.036 3.964 22 C -0.111 4.111 23 O -0.325 6.325 24 C 0.013 3.987 25 C 0.015 3.985 26 O -0.325 6.325 27 C 0.113 3.887 28 C -0.141 4.141 29 H 0.248 0.752 30 H 0.369 0.631 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.047 0.953 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -28.492 -10.256 31.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.226 1.226 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.063 3.937 11 C -0.166 4.166 12 C 0.000 4.000 13 N -0.341 5.341 14 C 0.304 3.696 15 O -0.462 6.462 16 C -0.132 4.132 17 C -0.067 4.067 18 C -0.125 4.125 19 C -0.141 4.141 20 C -0.011 4.011 21 C -0.009 4.009 22 C -0.129 4.129 23 O -0.240 6.240 24 C -0.061 4.061 25 C -0.059 4.059 26 O -0.240 6.240 27 C -0.009 4.009 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.201 0.799 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.158 0.842 41 H 0.091 0.909 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.134 0.866 47 H 0.066 0.934 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.206 -28.877 -9.926 31.893 hybrid contribution -0.522 1.081 0.277 1.233 sum 8.683 -27.796 -9.649 30.678 Atomic orbital electron populations 1.69834 1.06718 1.25767 1.60082 1.25555 0.96298 1.01104 1.04271 0.85107 0.78470 0.80059 0.76352 1.18626 1.22386 1.22589 1.19683 0.91546 0.85025 1.40074 0.90126 1.42691 1.05382 1.01125 1.88637 1.20447 0.94184 0.84496 0.94555 1.22046 0.98593 0.94726 1.01240 1.21452 0.98881 0.96066 0.83602 1.48255 1.53927 1.15245 1.16636 1.21052 0.78998 0.80794 0.88785 1.90689 1.41991 1.47312 1.66236 1.20749 1.04971 0.94622 0.92894 1.19211 0.94628 0.94211 0.98611 1.21033 0.95941 0.96978 0.98569 1.20628 1.00822 0.89993 1.02675 1.19066 0.95179 0.86435 1.00401 1.18962 0.91884 0.89212 1.00864 1.20424 1.01856 0.89210 1.01443 1.86265 1.36532 1.14484 1.86703 1.23947 1.00592 0.83237 0.98360 1.23947 0.91393 0.92430 0.98161 1.86270 1.37075 1.16311 1.84376 1.22057 0.93870 0.86184 0.98802 1.22528 0.99985 0.96849 0.98859 0.94267 0.79941 0.93297 0.93279 0.91382 0.90308 0.89995 0.85250 0.84825 0.83749 0.83621 0.84222 0.90891 0.82728 0.82951 0.89943 0.89483 0.86647 0.93384 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 2 C -0.08 -4.53 5.50 84.87 0.47 -4.06 16 3 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.23 -12.33 9.93 84.04 0.83 -11.49 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -35.92 5.12 -322.80 -1.65 -37.57 16 10 C 0.17 6.22 2.73 45.02 0.12 6.34 16 11 C -0.13 -4.11 5.55 30.67 0.17 -3.94 16 12 C 0.12 3.34 6.43 86.36 0.56 3.90 16 13 N -0.61 -14.79 2.97 -818.09 -2.43 -17.21 16 14 C 0.51 13.07 7.69 87.66 0.67 13.74 16 15 O -0.58 -19.83 15.45 -3.02 -0.05 -19.88 16 16 C -0.09 -1.60 4.17 29.10 0.12 -1.48 16 17 C -0.07 -1.41 4.37 -19.87 -0.09 -1.49 16 18 C -0.11 -2.28 9.69 22.26 0.22 -2.06 16 19 C -0.12 -2.69 9.96 22.37 0.22 -2.47 16 20 C 0.03 0.80 6.49 22.56 0.15 0.94 16 21 C 0.04 0.84 6.49 22.56 0.15 0.99 16 22 C -0.11 -2.50 9.61 22.37 0.22 -2.29 16 23 O -0.32 -6.78 10.42 -82.55 -0.86 -7.64 16 24 C 0.01 0.16 7.26 72.14 0.52 0.69 16 25 C 0.02 0.17 7.26 72.14 0.52 0.70 16 26 O -0.33 -6.63 10.42 -82.50 -0.86 -7.49 16 27 C 0.11 2.29 6.37 86.51 0.55 2.84 16 28 C -0.14 -4.21 5.67 30.82 0.17 -4.04 16 29 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 30 H 0.37 19.80 7.80 -92.71 -0.72 19.08 16 31 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.32 7.01 -2.39 -0.02 2.30 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.13 1.68 7.65 -2.39 -0.02 1.66 16 37 H 0.13 1.50 7.87 -2.39 -0.02 1.48 16 38 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.12 1.55 5.93 -2.39 -0.01 1.53 16 47 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.23 389.56 2.29 -73.94 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.25 Total: 30.73 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.58 Total: -3.19 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -3.80 Total: -113.73 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.77 Total: -35.01 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.23 2.29 -73.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997256708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.463 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds