Wall clock time and date at job start Wed Apr 1 2020 04:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46906 * 2 1 4 4 C 1.34773 * 120.00107 * 273.35726 * 3 2 1 5 5 O 1.21631 * 120.00229 * 185.01658 * 4 3 2 6 6 C 1.47268 * 120.00074 * 5.01817 * 4 3 2 7 7 N 1.34845 * 126.04044 * 5.16754 * 6 4 3 8 8 C 1.32124 * 109.12195 * 179.88658 * 7 6 4 9 9 C 1.41286 * 131.86525 * 180.02562 * 8 7 6 10 10 C 1.35843 * 119.37085 * 180.32090 * 9 8 7 11 11 C 1.40639 * 119.77939 * 0.02562 * 10 9 8 12 12 C 1.34780 * 120.35962 * 359.97438 * 11 10 9 13 13 N 1.36849 * 120.63089 * 0.02562 * 12 11 10 14 14 C 1.36250 * 132.19897 * 179.97438 * 13 12 11 15 15 F 1.35098 * 126.55956 * 0.04726 * 14 13 12 16 16 C 1.46503 * 119.99853 * 93.35161 * 3 2 1 17 17 H 1.08994 * 110.64047 * 1.69032 * 16 3 2 18 18 C 1.55158 * 110.71786 * 125.02339 * 16 3 2 19 19 C 1.54909 * 101.57953 * 153.86287 * 18 16 3 20 20 N 1.47418 * 104.83785 * 322.99397 * 19 18 16 21 21 C 1.36932 * 125.65117 * 204.16014 * 20 19 18 22 22 H 1.08005 * 120.00190 * 179.97438 * 21 20 19 23 23 C 1.38804 * 120.00220 * 359.96033 * 21 20 19 24 24 N 1.31624 * 120.00188 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00383 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47012 * 60.00102 * 25 23 21 27 27 H 1.48503 * 109.47084 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46949 * 299.99896 * 25 23 21 29 29 C 1.47026 * 108.70179 * 24.12690 * 20 19 18 30 30 H 1.09006 * 109.46860 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47633 * 299.99668 * 1 2 3 32 32 H 1.09006 * 109.47552 * 60.00018 * 1 2 3 33 33 H 1.09002 * 109.47419 * 240.00634 * 2 1 3 34 34 H 1.09002 * 109.47101 * 119.99771 * 2 1 3 35 35 H 1.07994 * 120.31521 * 0.35340 * 9 8 7 36 36 H 1.08000 * 120.10879 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.82119 * 180.02562 * 11 10 9 38 38 H 1.07994 * 119.68093 * 180.02562 * 12 11 10 39 39 H 1.08990 * 111.00907 * 271.94377 * 18 16 3 40 40 H 1.09006 * 111.00500 * 35.79560 * 18 16 3 41 41 H 1.09002 * 110.37214 * 204.15103 * 19 18 16 42 42 H 1.09002 * 110.36315 * 81.83408 * 19 18 16 43 43 H 0.96996 * 120.00782 * 180.02562 * 24 23 21 44 44 H 1.09002 * 109.88397 * 239.52506 * 29 20 19 45 45 H 1.08998 * 109.88224 * 118.35886 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1784 2.0394 -1.1652 5 8 2.6692 3.1523 -1.1726 6 6 1.7591 1.4112 -2.4294 7 7 1.1164 0.2324 -2.5546 8 6 0.9013 -0.0093 -3.8356 9 6 0.2760 -1.0884 -4.4996 10 6 0.1977 -1.0810 -5.8557 11 6 0.7384 -0.0040 -6.5807 12 6 1.3328 1.0203 -5.9372 13 7 1.4203 1.0291 -4.5716 14 6 1.9584 1.9224 -3.6947 15 9 2.5702 3.0861 -4.0053 16 6 2.3323 2.0472 1.2666 17 1 2.1768 1.3694 2.1059 18 6 3.7860 2.5894 1.2560 19 6 3.6887 3.7600 2.2658 20 7 2.3579 4.3499 2.0328 21 6 1.9934 5.6373 2.3243 22 1 0.9893 5.9750 2.1141 23 6 2.9143 6.5081 2.8902 24 7 4.1378 6.0964 3.1471 25 14 2.4173 8.2646 3.2872 26 1 1.2918 8.2536 4.2558 27 1 3.5731 8.9840 3.8803 28 1 1.9918 8.9521 2.0416 29 6 1.4871 3.3273 1.4348 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 -0.1364 -1.9110 -3.9342 36 1 -0.2781 -1.8995 -6.3754 37 1 0.6762 0.0028 -7.6589 38 1 1.7439 1.8420 -6.5048 39 1 4.4883 1.8315 1.6028 40 1 4.0612 2.9503 0.2649 41 1 4.4691 4.4955 2.0706 42 1 3.7647 3.3871 3.2872 43 1 4.7812 6.7048 3.5429 44 1 1.1306 3.6666 0.4622 45 1 0.6414 3.1294 2.0934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034004921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:26 Heat of formation + Delta-G solvation = 76.656879 kcal Electronic energy + Delta-G solvation = -31091.471098 eV Core-core repulsion = 26834.373672 eV Total energy + Delta-G solvation = -4257.097426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.14209 -43.13640 -39.89212 -37.72261 -36.54287 -35.35027 -34.09380 -32.26106 -30.79671 -30.08465 -29.04965 -28.68616 -27.12387 -25.18818 -24.08119 -23.33546 -23.20345 -22.54573 -20.77624 -19.99429 -19.04061 -18.57334 -17.57869 -17.22912 -17.01382 -16.62935 -16.22259 -15.76583 -15.31456 -15.18340 -14.86832 -14.65188 -14.51226 -14.19266 -14.02165 -13.62512 -13.52152 -13.18612 -12.76367 -12.45271 -12.37151 -12.29959 -12.05346 -11.83390 -11.55442 -11.48322 -11.32694 -10.89211 -10.84125 -10.70725 -10.65240 -10.46480 -10.34722 -10.00199 -9.67294 -9.42662 -9.26207 -9.11608 -8.47288 -8.26885 -8.09035 -6.62423 -5.46903 -2.87089 0.16381 0.65814 1.62205 1.78006 2.92098 3.17847 3.50559 3.52355 3.55520 3.57536 3.62943 3.94426 3.98845 4.32716 4.33605 4.54254 4.65050 4.73863 4.99391 5.21108 5.25162 5.45549 5.50064 5.53850 5.64092 5.65868 5.70856 5.75426 5.83131 5.92425 5.93189 5.97855 6.07548 6.20554 6.43986 6.51958 6.55810 6.70299 6.74129 6.78984 6.92178 7.15654 7.34339 7.66523 7.78535 7.81538 8.05136 8.49547 8.56661 9.40354 10.01549 10.67262 11.57024 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.002938 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.315304 B = 9526.460537 C =10351.682853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.108 3.892 3 N -0.587 5.587 4 C 0.587 3.413 5 O -0.494 6.494 6 C 0.017 3.983 7 N -0.433 5.433 8 C 0.234 3.766 9 C -0.070 4.070 10 C -0.101 4.101 11 C -0.132 4.132 12 C 0.053 3.947 13 N -0.382 5.382 14 C 0.174 3.826 15 F -0.072 7.072 16 C 0.136 3.864 17 H 0.091 0.909 18 C -0.160 4.160 19 C 0.159 3.841 20 N -0.596 5.596 21 C -0.213 4.213 22 H 0.074 0.926 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.135 3.865 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.009 0.991 43 H 0.250 0.750 44 H 0.032 0.968 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 -20.765 -20.308 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.372 3.628 5 O -0.367 6.367 6 C -0.118 4.118 7 N -0.155 5.155 8 C -0.010 4.010 9 C -0.090 4.090 10 C -0.125 4.125 11 C -0.152 4.152 12 C -0.067 4.067 13 N -0.060 5.060 14 C 0.040 3.960 15 F -0.051 7.051 16 C 0.033 3.967 17 H 0.109 0.891 18 C -0.199 4.199 19 C 0.034 3.966 20 N -0.322 5.322 21 C -0.341 4.341 22 H 0.092 0.908 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.008 3.992 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.027 0.973 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -7.326 -20.332 -19.509 29.115 hybrid contribution -0.036 1.620 -0.723 1.774 sum -7.361 -18.713 -20.232 28.525 Atomic orbital electron populations 1.22061 0.95894 1.01418 1.01981 1.21762 0.94913 0.81789 1.03004 1.47773 1.64539 1.14170 1.05391 1.16696 0.79714 0.84923 0.81485 1.90966 1.42067 1.18049 1.85660 1.21020 1.04770 0.93979 0.92022 1.71329 1.17274 1.13859 1.13041 1.20879 1.02485 0.90594 0.87054 1.20381 0.98692 0.95817 0.94087 1.21108 0.99149 0.98800 0.93400 1.20877 0.99570 0.93397 1.01376 1.21782 1.02484 1.02019 0.80456 1.42797 1.38898 1.17536 1.06800 1.17505 1.05894 0.84664 0.87890 1.91700 1.79481 1.40959 1.92956 1.22264 0.97329 0.94144 0.82973 0.89056 1.23514 0.93557 0.99354 1.03500 1.21837 0.90223 0.92134 0.92445 1.44299 1.08110 1.07722 1.72085 1.19009 0.96398 0.85580 1.33162 0.90794 1.24748 0.96007 0.98340 1.01764 1.69793 1.03775 1.34157 1.49607 0.86163 0.76951 0.84520 0.77945 1.21385 1.21663 1.21289 1.21468 0.92800 0.88367 0.96578 0.92308 0.93249 0.91929 0.88614 0.91253 0.82328 0.83545 0.82726 0.81618 0.92891 0.89479 0.87578 0.97285 0.93882 0.95035 0.96438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.65 37.15 0.36 -1.52 16 2 C 0.11 1.41 5.67 -4.04 -0.02 1.39 16 3 N -0.59 -10.09 2.54 -165.34 -0.42 -10.51 16 4 C 0.59 11.19 6.72 -12.59 -0.08 11.11 16 5 O -0.49 -11.53 12.87 5.25 0.07 -11.46 16 6 C 0.02 0.27 6.49 -82.99 -0.54 -0.27 16 7 N -0.43 -5.65 6.15 -9.03 -0.06 -5.70 16 8 C 0.23 2.51 7.79 -155.92 -1.21 1.30 16 9 C -0.07 -0.46 10.11 -39.28 -0.40 -0.85 16 10 C -0.10 -0.43 10.06 -39.53 -0.40 -0.83 16 11 C -0.13 -0.59 9.98 -39.90 -0.40 -0.99 16 12 C 0.05 0.38 10.93 -16.54 -0.18 0.20 16 13 N -0.38 -4.28 2.94 -62.42 -0.18 -4.46 16 14 C 0.17 2.58 8.84 -15.71 -0.14 2.44 16 15 F -0.07 -1.17 16.84 2.25 0.04 -1.13 16 16 C 0.14 2.67 3.45 -66.09 -0.23 2.44 16 17 H 0.09 1.59 7.81 -51.93 -0.41 1.19 16 18 C -0.16 -3.50 6.39 -24.58 -0.16 -3.66 16 19 C 0.16 4.22 5.89 -2.53 -0.01 4.21 16 20 N -0.60 -16.81 3.39 -170.08 -0.58 -17.39 16 21 C -0.21 -6.44 10.27 -15.06 -0.15 -6.60 16 22 H 0.07 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 24 N -0.92 -28.64 10.09 55.49 0.56 -28.08 16 25 Si 0.91 23.52 29.55 -169.99 -5.02 18.49 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C 0.13 3.20 6.52 -3.06 -0.02 3.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.85 6.53 -51.93 -0.34 0.51 16 33 H 0.10 1.21 5.69 -51.93 -0.30 0.92 16 34 H 0.07 0.79 7.87 -51.93 -0.41 0.39 16 35 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 37 H 0.16 0.20 8.06 -52.49 -0.42 -0.23 16 38 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.09 5.64 -51.93 -0.29 1.80 16 41 H 0.11 3.18 5.87 -51.93 -0.31 2.88 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.03 0.81 6.43 -51.93 -0.33 0.47 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -36.93 364.85 -9.51 -46.44 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.73 Total: -2.74 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -3.68 Total: 11.04 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.68 Total: -66.14 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.93 -9.51 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034004921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.096 kcal (2) G-P(sol) polarization free energy of solvation -36.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds