Wall clock time and date at job start Wed Apr 1 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 109.70175 * 2 1 4 4 C 1.52764 * 109.51390 * 239.88297 * 2 1 3 5 5 C 1.53034 * 109.38400 * 185.70517 * 4 2 1 6 6 H 1.09002 * 109.44705 * 181.25173 * 5 4 2 7 7 N 1.46498 * 109.46326 * 301.21394 * 5 4 2 8 8 C 1.36933 * 120.00363 * 205.07316 * 7 5 4 9 9 H 1.07998 * 120.00347 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00009 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00138 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47029 * 89.99833 * 12 10 8 14 14 H 1.48497 * 109.47248 * 209.99931 * 12 10 8 15 15 H 1.48507 * 109.46934 * 329.99955 * 12 10 8 16 16 C 1.53037 * 109.53872 * 61.24163 * 5 4 2 17 17 C 1.53187 * 109.31041 * 298.62880 * 16 5 4 18 18 N 1.46925 * 108.77684 * 54.63958 * 17 16 5 19 19 C 1.34773 * 120.63417 * 126.36565 * 18 17 16 20 20 O 1.21636 * 120.00113 * 187.57247 * 19 18 17 21 21 C 1.47265 * 120.00225 * 7.57336 * 19 18 17 22 22 N 1.34845 * 126.03724 * 6.24631 * 21 19 18 23 23 C 1.32132 * 109.12596 * 180.02562 * 22 21 19 24 24 C 1.41279 * 131.87252 * 180.02562 * 23 22 21 25 25 C 1.35835 * 119.37387 * 179.97438 * 24 23 22 26 26 C 1.40646 * 119.78115 * 0.25852 * 25 24 23 27 27 C 1.34783 * 120.35426 * 359.48971 * 26 25 24 28 28 N 1.36849 * 120.62684 * 0.49788 * 27 26 25 29 29 C 1.36257 * 132.19621 * 179.78520 * 28 27 26 30 30 F 1.35099 * 126.55348 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47312 * 300.20990 * 1 2 3 32 32 H 1.09004 * 109.47203 * 60.20628 * 1 2 3 33 33 H 1.09001 * 109.46778 * 180.20746 * 1 2 3 34 34 H 1.09000 * 109.56033 * 65.66443 * 4 2 1 35 35 H 1.09004 * 109.37992 * 305.63217 * 4 2 1 36 36 H 0.97010 * 119.99601 * 25.07546 * 7 5 4 37 37 H 0.96996 * 120.00506 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.49888 * 178.68233 * 16 5 4 39 39 H 1.08993 * 109.52520 * 58.59872 * 16 5 4 40 40 H 1.09005 * 109.59099 * 294.84958 * 17 16 5 41 41 H 1.09000 * 109.70380 * 174.49472 * 17 16 5 42 42 H 1.08002 * 120.31362 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.11256 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.82365 * 179.74258 * 26 25 24 45 45 H 1.07990 * 119.68123 * 180.23914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5638 -0.8461 -1.1726 6 1 3.9312 -1.3417 -2.0712 7 7 4.1578 0.4895 -1.0745 8 6 5.4417 0.7009 -1.5010 9 1 6.0167 -0.1170 -1.9093 10 6 6.0046 1.9664 -1.4075 11 7 5.3041 2.9631 -0.9094 12 14 7.7563 2.2547 -1.9886 13 1 7.7452 2.6370 -3.4234 14 1 8.3694 3.3463 -1.1902 15 1 8.5469 1.0097 -1.8142 16 6 3.9523 -1.6686 0.0581 17 6 3.4645 -0.9518 1.3210 18 7 2.0226 -0.6995 1.1945 19 6 1.1674 -1.1069 2.1532 20 8 -0.0326 -1.0168 1.9760 21 6 1.6857 -1.6611 3.4153 22 7 2.9806 -1.7080 3.7885 23 6 3.0676 -2.2729 4.9798 24 6 4.1749 -2.5584 5.8095 25 6 3.9701 -3.1578 7.0111 26 6 2.6638 -3.4912 7.4119 27 6 1.6141 -3.2097 6.6147 28 7 1.8024 -2.6059 5.4012 29 6 0.9328 -2.2242 4.4241 30 9 -0.4103 -2.3691 4.4408 31 1 -0.3634 0.5171 0.8881 32 1 -0.3634 0.5106 -0.8919 33 1 -0.3633 -1.0277 0.0037 34 1 1.7632 -0.1565 -2.1349 35 1 1.5964 -1.7169 -1.2942 36 1 3.6414 1.2241 -0.7073 37 1 5.6972 3.8474 -0.8444 38 1 5.0363 -1.7760 0.0966 39 1 3.4909 -2.6542 -0.0020 40 1 3.9929 -0.0047 1.4310 41 1 3.6507 -1.5775 2.1939 42 1 5.1748 -2.3025 5.4914 43 1 4.8080 -3.3819 7.6547 44 1 2.5006 -3.9715 8.3653 45 1 0.6153 -3.4669 6.9349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044805708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:59 Heat of formation + Delta-G solvation = 62.913257 kcal Electronic energy + Delta-G solvation = -31094.052541 eV Core-core repulsion = 26836.359147 eV Total energy + Delta-G solvation = -4257.693394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.19878 -43.11674 -40.11785 -37.78290 -37.16468 -34.31466 -33.97404 -32.48067 -31.80862 -30.56596 -29.08115 -28.84628 -26.90507 -25.07492 -23.94100 -23.42261 -23.28309 -22.82873 -21.49025 -19.94970 -18.88557 -18.36341 -17.54074 -17.17212 -17.12997 -16.80613 -16.00848 -15.75357 -15.50785 -15.15331 -15.03745 -14.88442 -14.41626 -14.04747 -13.89558 -13.76351 -13.60328 -13.10987 -13.00243 -12.74024 -12.43775 -12.32289 -12.16152 -11.93538 -11.84620 -11.47022 -11.39009 -11.14942 -10.87909 -10.75514 -10.68610 -10.45111 -10.17268 -9.85626 -9.66124 -9.55100 -9.23786 -8.94147 -8.79741 -8.21908 -7.97519 -6.89491 -5.71431 -2.99594 0.20171 0.67942 1.63352 1.77540 2.95690 3.21991 3.46113 3.46502 3.51771 3.53282 3.68223 3.93446 4.02753 4.33067 4.38661 4.59990 4.63869 4.79708 5.04134 5.25452 5.38285 5.42733 5.50356 5.54125 5.70469 5.70893 5.73487 5.80910 5.94807 5.97280 6.00180 6.11637 6.14537 6.31055 6.41805 6.47017 6.55033 6.61820 6.70282 6.76381 6.86801 6.92156 7.02242 7.23355 7.25835 7.75332 7.84355 8.44071 8.47124 9.58308 10.16360 10.51451 11.51225 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003359 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.498736 B = 8334.807331 C = 9997.847685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.049 0.951 7 N -0.721 5.721 8 C -0.235 4.235 9 H 0.069 0.931 10 C -0.013 4.013 11 N -0.933 5.933 12 Si 0.904 3.096 13 H -0.292 1.292 14 H -0.293 1.293 15 H -0.283 1.283 16 C -0.147 4.147 17 C 0.087 3.913 18 N -0.573 5.573 19 C 0.591 3.409 20 O -0.534 6.534 21 C 0.019 3.981 22 N -0.431 5.431 23 C 0.238 3.762 24 C -0.067 4.067 25 C -0.102 4.102 26 C -0.128 4.128 27 C 0.048 3.952 28 N -0.381 5.381 29 C 0.168 3.832 30 F -0.076 7.076 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.162 0.838 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -15.123 17.833 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.062 3.938 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.366 4.366 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.219 1.219 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.188 4.188 17 C -0.034 4.034 18 N -0.303 5.303 19 C 0.377 3.623 20 O -0.412 6.412 21 C -0.116 4.116 22 N -0.152 5.152 23 C -0.005 4.005 24 C -0.087 4.087 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.072 4.072 28 N -0.059 5.059 29 C 0.035 3.965 30 F -0.055 7.055 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.180 0.820 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.598 -14.750 17.125 23.545 hybrid contribution -0.014 0.102 0.438 0.450 sum -6.612 -14.647 17.563 23.806 Atomic orbital electron populations 1.22242 0.93201 1.02965 1.00889 1.21247 0.94869 0.96059 0.83609 0.89922 1.22167 0.97525 1.00254 0.97212 1.20218 0.90323 0.88142 0.95123 0.93331 1.42496 1.13818 1.04884 1.75176 1.19233 0.89871 0.94183 1.33358 0.91255 1.24708 0.98189 0.95962 1.02071 1.69653 1.36511 1.00623 1.51340 0.86229 0.84830 0.77321 0.78034 1.21908 1.21918 1.20838 1.22496 1.01237 0.97744 0.97339 1.22594 0.77663 1.03034 1.00142 1.47972 1.08586 1.54775 1.19007 1.16764 0.85655 0.78568 0.81339 1.90883 1.14635 1.56471 1.79222 1.21047 0.88682 1.05348 0.96491 1.71067 1.16820 1.19115 1.08184 1.20972 0.83418 1.02494 0.93664 1.20479 0.96937 0.98786 0.92479 1.21124 0.97446 0.97895 0.96086 1.20895 0.91658 1.01791 1.00544 1.21748 1.02145 0.99052 0.84238 1.42801 1.09400 1.40034 1.13617 1.17398 0.77123 1.10353 0.91617 1.91661 1.23995 1.94201 1.95611 0.91079 0.93894 0.91608 0.90699 0.92115 0.78167 0.93601 0.90960 0.93752 0.90179 0.85903 0.82015 0.83420 0.82702 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.59 37.16 0.28 -2.01 16 2 C 0.14 2.63 3.18 -67.82 -0.22 2.41 16 3 H 0.08 1.68 6.64 -51.92 -0.34 1.33 16 4 C -0.13 -2.35 5.05 -26.83 -0.14 -2.48 16 5 C 0.17 3.45 3.10 -67.89 -0.21 3.24 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.66 4.31 -53.39 -0.23 -17.89 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 12 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.15 -2.70 5.78 -26.62 -0.15 -2.85 16 17 C 0.09 1.61 5.83 -3.71 -0.02 1.59 16 18 N -0.57 -10.45 2.98 -166.78 -0.50 -10.95 16 19 C 0.59 10.74 7.59 -12.59 -0.10 10.65 16 20 O -0.53 -10.31 11.90 5.25 0.06 -10.24 16 21 C 0.02 0.32 6.69 -83.00 -0.55 -0.24 16 22 N -0.43 -6.54 7.76 -9.04 -0.07 -6.61 16 23 C 0.24 2.90 7.79 -155.92 -1.21 1.69 16 24 C -0.07 -0.55 10.11 -39.29 -0.40 -0.95 16 25 C -0.10 -0.55 10.06 -39.53 -0.40 -0.95 16 26 C -0.13 -0.63 9.98 -39.90 -0.40 -1.03 16 27 C 0.05 0.35 10.94 -16.54 -0.18 0.17 16 28 N -0.38 -4.37 2.94 -62.42 -0.18 -4.56 16 29 C 0.17 2.41 8.83 -15.71 -0.14 2.28 16 30 F -0.08 -1.09 16.84 2.25 0.04 -1.05 16 31 H 0.07 1.28 6.55 -51.93 -0.34 0.94 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.14 6.94 -51.93 -0.36 0.78 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.38 10.03 6.07 -40.82 -0.25 9.78 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.72 7.74 -51.93 -0.40 1.32 16 41 H 0.12 2.13 4.11 -62.10 -0.26 1.87 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.15 0.35 8.06 -52.48 -0.42 -0.07 16 44 H 0.16 0.24 8.06 -52.49 -0.42 -0.18 16 45 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -33.02 363.81 -9.50 -42.51 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.72 Total: 8.78 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -4.08 Total: 4.50 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.26 Total: -67.22 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.06 Total: -10.24 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.02 -9.50 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044805708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.427 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds