Wall clock time and date at job start Wed Apr 1 2020 03:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09011 * 109.70175 * 2 1 4 4 C 1.52764 * 109.51390 * 239.88297 * 2 1 3 5 5 C 1.53034 * 109.38400 * 185.70517 * 4 2 1 6 6 H 1.09002 * 109.44705 * 181.25173 * 5 4 2 7 7 N 1.46498 * 109.46326 * 301.21394 * 5 4 2 8 8 C 1.36933 * 120.00363 * 205.07316 * 7 5 4 9 9 H 1.07998 * 120.00347 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00009 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00138 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47029 * 89.99833 * 12 10 8 14 14 H 1.48497 * 109.47248 * 209.99931 * 12 10 8 15 15 H 1.48507 * 109.46934 * 329.99955 * 12 10 8 16 16 C 1.53037 * 109.53872 * 61.24163 * 5 4 2 17 17 C 1.53187 * 109.31041 * 298.62880 * 16 5 4 18 18 N 1.46925 * 108.77684 * 54.63958 * 17 16 5 19 19 C 1.34773 * 120.63417 * 126.36565 * 18 17 16 20 20 O 1.21636 * 120.00113 * 187.57247 * 19 18 17 21 21 C 1.47265 * 120.00225 * 7.57336 * 19 18 17 22 22 N 1.34845 * 126.03724 * 6.24631 * 21 19 18 23 23 C 1.32132 * 109.12596 * 180.02562 * 22 21 19 24 24 C 1.41279 * 131.87252 * 180.02562 * 23 22 21 25 25 C 1.35835 * 119.37387 * 179.97438 * 24 23 22 26 26 C 1.40646 * 119.78115 * 0.25852 * 25 24 23 27 27 C 1.34783 * 120.35426 * 359.48971 * 26 25 24 28 28 N 1.36849 * 120.62684 * 0.49788 * 27 26 25 29 29 C 1.36257 * 132.19621 * 179.78520 * 28 27 26 30 30 F 1.35099 * 126.55348 * 0.02562 * 29 28 27 31 31 H 1.09005 * 109.47312 * 300.20990 * 1 2 3 32 32 H 1.09004 * 109.47203 * 60.20628 * 1 2 3 33 33 H 1.09001 * 109.46778 * 180.20746 * 1 2 3 34 34 H 1.09000 * 109.56033 * 65.66443 * 4 2 1 35 35 H 1.09004 * 109.37992 * 305.63217 * 4 2 1 36 36 H 0.97010 * 119.99601 * 25.07546 * 7 5 4 37 37 H 0.96996 * 120.00506 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.49888 * 178.68233 * 16 5 4 39 39 H 1.08993 * 109.52520 * 58.59872 * 16 5 4 40 40 H 1.09005 * 109.59099 * 294.84958 * 17 16 5 41 41 H 1.09000 * 109.70380 * 174.49472 * 17 16 5 42 42 H 1.08002 * 120.31362 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.11256 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.82365 * 179.74258 * 26 25 24 45 45 H 1.07990 * 119.68123 * 180.23914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0402 -0.7225 -1.2455 5 6 3.5638 -0.8461 -1.1726 6 1 3.9312 -1.3417 -2.0712 7 7 4.1578 0.4895 -1.0745 8 6 5.4417 0.7009 -1.5010 9 1 6.0167 -0.1170 -1.9093 10 6 6.0046 1.9664 -1.4075 11 7 5.3041 2.9631 -0.9094 12 14 7.7563 2.2547 -1.9886 13 1 7.7452 2.6370 -3.4234 14 1 8.3694 3.3463 -1.1902 15 1 8.5469 1.0097 -1.8142 16 6 3.9523 -1.6686 0.0581 17 6 3.4645 -0.9518 1.3210 18 7 2.0226 -0.6995 1.1945 19 6 1.1674 -1.1069 2.1532 20 8 -0.0326 -1.0168 1.9760 21 6 1.6857 -1.6611 3.4153 22 7 2.9806 -1.7080 3.7885 23 6 3.0676 -2.2729 4.9798 24 6 4.1749 -2.5584 5.8095 25 6 3.9701 -3.1578 7.0111 26 6 2.6638 -3.4912 7.4119 27 6 1.6141 -3.2097 6.6147 28 7 1.8024 -2.6059 5.4012 29 6 0.9328 -2.2242 4.4241 30 9 -0.4103 -2.3691 4.4408 31 1 -0.3634 0.5171 0.8881 32 1 -0.3634 0.5106 -0.8919 33 1 -0.3633 -1.0277 0.0037 34 1 1.7632 -0.1565 -2.1349 35 1 1.5964 -1.7169 -1.2942 36 1 3.6414 1.2241 -0.7073 37 1 5.6972 3.8474 -0.8444 38 1 5.0363 -1.7760 0.0966 39 1 3.4909 -2.6542 -0.0020 40 1 3.9929 -0.0047 1.4310 41 1 3.6507 -1.5775 2.1939 42 1 5.1748 -2.3025 5.4914 43 1 4.8080 -3.3819 7.6547 44 1 2.5006 -3.9715 8.3653 45 1 0.6153 -3.4669 6.9349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044805708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:58 Heat of formation + Delta-G solvation = 43.797846 kcal Electronic energy + Delta-G solvation = -31094.881448 eV Core-core repulsion = 26836.359147 eV Total energy + Delta-G solvation = -4258.522300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.25908 -43.99482 -41.52566 -38.95275 -38.29344 -35.88966 -34.98650 -33.87465 -33.61936 -31.43922 -30.79721 -29.83506 -28.37760 -26.16380 -25.66739 -25.01307 -24.14757 -23.80118 -22.81075 -21.33715 -19.99981 -19.57689 -19.16755 -18.39131 -18.15367 -17.97052 -17.08055 -16.88149 -16.72772 -16.29149 -16.13010 -15.93502 -15.84123 -15.63561 -15.45549 -15.02372 -14.90207 -14.73843 -14.49592 -14.05927 -13.47937 -13.36668 -13.33952 -13.17204 -12.91645 -12.89526 -12.79418 -12.59597 -12.50750 -12.17958 -12.09761 -12.07850 -11.96338 -11.64106 -11.37746 -11.12501 -10.71611 -10.29249 -10.11200 -9.51836 -9.00471 -8.92875 -7.87332 -5.14978 -0.52079 -0.09261 0.77171 0.80182 1.50270 1.51576 1.59835 1.90753 2.07910 2.41184 2.61127 2.79260 3.09891 3.16654 3.45915 3.51565 3.67782 3.87485 3.90203 3.97968 4.06481 4.13429 4.13819 4.38429 4.44308 4.50915 4.54528 4.60938 4.66188 4.84819 4.85436 4.93075 5.02967 5.07047 5.11480 5.18861 5.21104 5.23887 5.35182 5.39921 5.42349 5.48824 5.59581 5.70534 5.82033 6.26311 6.33964 6.43672 7.04041 7.40542 8.16219 8.40573 9.36253 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003359 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.498736 B = 8334.807331 C = 9997.847685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.144 3.856 3 H 0.054 0.946 4 C -0.121 4.121 5 C 0.166 3.834 6 H 0.051 0.949 7 N -0.730 5.730 8 C -0.231 4.231 9 H 0.077 0.923 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.969 3.031 13 H -0.291 1.291 14 H -0.300 1.300 15 H -0.268 1.268 16 C -0.137 4.137 17 C 0.099 3.901 18 N -0.577 5.577 19 C 0.588 3.412 20 O -0.552 6.552 21 C -0.011 4.011 22 N -0.472 5.472 23 C 0.239 3.761 24 C -0.099 4.099 25 C -0.067 4.067 26 C -0.105 4.105 27 C 0.022 3.978 28 N -0.377 5.377 29 C 0.155 3.845 30 F -0.082 7.082 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.372 0.628 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.139 0.861 42 H 0.173 0.827 43 H 0.192 0.808 44 H 0.203 0.797 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -17.986 20.438 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.041 3.959 3 H 0.072 0.928 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.069 0.931 7 N -0.371 5.371 8 C -0.363 4.363 9 H 0.095 0.905 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.799 3.201 13 H -0.218 1.218 14 H -0.227 1.227 15 H -0.193 1.193 16 C -0.178 4.178 17 C -0.023 4.023 18 N -0.307 5.307 19 C 0.376 3.624 20 O -0.432 6.432 21 C -0.145 4.145 22 N -0.193 5.193 23 C -0.005 4.005 24 C -0.119 4.119 25 C -0.090 4.090 26 C -0.124 4.124 27 C -0.096 4.096 28 N -0.054 5.054 29 C 0.021 3.979 30 F -0.061 7.061 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.205 0.795 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.156 0.844 42 H 0.190 0.810 43 H 0.209 0.791 44 H 0.220 0.780 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.681 -17.677 19.737 27.098 hybrid contribution -0.278 0.833 -0.082 0.882 sum -5.960 -16.844 19.655 26.562 Atomic orbital electron populations 1.22071 0.91973 1.02783 1.00963 1.21179 0.95697 0.94787 0.84194 0.92774 1.22058 0.95773 1.01302 0.96876 1.20440 0.91699 0.86274 0.95824 0.93135 1.42650 1.13185 1.06334 1.74926 1.19616 0.90820 0.94187 1.31628 0.90546 1.25482 1.02038 0.95993 1.03323 1.69825 1.38140 1.00740 1.53509 0.85192 0.80543 0.77261 0.77088 1.21837 1.22666 1.19306 1.22365 1.00843 0.98389 0.96220 1.22442 0.77552 1.01257 1.01031 1.47960 1.08452 1.55069 1.19264 1.17052 0.85435 0.78067 0.81879 1.90850 1.15233 1.57280 1.79834 1.20693 0.89879 1.07480 0.96491 1.70798 1.16355 1.21671 1.10509 1.21547 0.84678 1.01137 0.93122 1.20825 0.96288 1.01211 0.93603 1.21750 0.99101 0.93637 0.94531 1.21577 0.90481 0.99151 1.01237 1.22525 1.04592 0.99445 0.83072 1.42876 1.08362 1.39846 1.14305 1.17231 0.77045 1.11236 0.92419 1.91628 1.24376 1.94329 1.95762 0.92588 0.92190 0.91768 0.90496 0.90029 0.79495 0.94344 0.91754 0.91469 0.94089 0.84390 0.80989 0.79127 0.77977 0.79379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 7.59 71.98 0.55 -3.64 16 2 C 0.14 5.47 3.18 44.83 0.14 5.61 16 3 H 0.05 2.36 6.64 -2.38 -0.02 2.34 16 4 C -0.12 -4.31 5.05 30.53 0.15 -4.16 16 5 C 0.17 6.72 3.10 45.02 0.14 6.86 16 6 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 7 N -0.73 -36.84 4.31 -322.83 -1.39 -38.23 16 8 C -0.23 -12.72 9.93 84.03 0.83 -11.89 16 9 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 10 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 11 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 12 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 14 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 C -0.14 -5.08 5.78 30.67 0.18 -4.90 16 17 C 0.10 3.83 5.83 86.36 0.50 4.33 16 18 N -0.58 -22.08 2.98 -799.83 -2.38 -24.46 16 19 C 0.59 22.45 7.59 86.62 0.66 23.11 16 20 O -0.55 -22.26 11.90 -4.15 -0.05 -22.31 16 21 C -0.01 -0.38 6.69 40.98 0.27 -0.11 16 22 N -0.47 -14.83 7.76 -182.50 -1.42 -16.24 16 23 C 0.24 5.68 7.79 134.20 1.05 6.73 16 24 C -0.10 -1.39 10.11 22.46 0.23 -1.17 16 25 C -0.07 -0.37 10.06 22.30 0.22 -0.15 16 26 C -0.10 -0.46 9.98 22.06 0.22 -0.24 16 27 C 0.02 0.26 10.94 83.12 0.91 1.17 16 28 N -0.38 -8.28 2.94 -351.41 -1.03 -9.31 16 29 C 0.16 4.55 8.83 83.93 0.74 5.29 16 30 F -0.08 -2.42 16.84 44.97 0.76 -1.66 16 31 H 0.06 2.10 6.55 -2.38 -0.02 2.09 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.06 2.24 6.94 -2.39 -0.02 2.23 16 34 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.37 20.46 6.07 -92.70 -0.56 19.90 16 37 H 0.25 15.02 8.31 -92.71 -0.77 14.24 16 38 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.04 1.88 7.74 -2.38 -0.02 1.86 16 41 H 0.14 5.00 4.11 -22.47 -0.09 4.91 16 42 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.19 -0.46 8.06 -2.91 -0.02 -0.48 16 44 H 0.20 -0.92 8.06 -2.91 -0.02 -0.94 16 45 H 0.19 1.18 8.06 -2.92 -0.02 1.15 16 Total: -1.00 -76.60 363.81 4.45 -72.15 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.40 Total: 28.54 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 7.26 Total: 22.91 kcal Atomic # 7 Polarization: -142.24 SS G_CDS: -5.94 Total: -148.19 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.76 Total: -1.66 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.60 4.45 -72.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044805708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.945 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds