Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48506 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46969 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47079 * 60.00270 * 3 2 1 7 7 C 1.38815 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00039 * 174.37719 * 9 7 2 11 11 C 1.52998 * 110.01259 * 61.55001 * 10 9 7 12 12 N 1.46502 * 109.46810 * 55.26301 * 11 10 9 13 13 C 1.34786 * 119.99573 * 175.53651 * 12 11 10 14 14 O 1.21586 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.47608 * 119.99633 * 179.97438 * 13 12 11 16 16 C 1.39698 * 120.10050 * 0.02562 * 15 13 12 17 17 C 1.37721 * 119.96521 * 179.77662 * 16 15 13 18 18 C 1.39005 * 120.27176 * 0.21622 * 17 16 15 19 19 C 1.39263 * 120.04697 * 359.95053 * 18 17 16 20 20 C 1.38286 * 119.95724 * 0.11835 * 19 18 17 21 21 O 1.36145 * 120.76315 * 180.21196 * 19 18 17 22 22 C 1.43176 * 116.69156 * 342.76387 * 21 19 18 23 23 C 1.53463 * 108.22060 * 46.22953 * 22 21 19 24 24 O 1.35964 * 119.24138 * 179.81204 * 18 17 16 25 25 C 1.54259 * 110.07298 * 182.97188 * 10 9 7 26 26 C 1.54890 * 104.19798 * 95.69718 * 25 10 9 27 27 C 1.54893 * 102.74663 * 37.94217 * 26 25 10 28 28 C 1.53880 * 110.02855 * 300.16311 * 10 9 7 29 29 H 0.96996 * 119.99718 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00315 * 354.38816 * 9 7 2 31 31 H 1.08994 * 109.47340 * 295.26023 * 11 10 9 32 32 H 1.09002 * 109.46893 * 175.26033 * 11 10 9 33 33 H 0.96990 * 120.00566 * 355.53340 * 12 11 10 34 34 H 1.08004 * 120.01382 * 0.04367 * 16 15 13 35 35 H 1.07997 * 119.86346 * 180.24684 * 17 16 15 36 36 H 1.07998 * 120.02482 * 179.90028 * 20 19 18 37 37 H 1.09003 * 109.71011 * 286.55088 * 22 21 19 38 38 H 1.08996 * 109.71260 * 165.91518 * 22 21 19 39 39 H 1.08996 * 109.71219 * 180.49436 * 23 22 21 40 40 H 1.08999 * 109.74109 * 59.89715 * 23 22 21 41 41 H 1.09000 * 110.48380 * 214.37510 * 25 10 9 42 42 H 1.09005 * 110.49166 * 337.01535 * 25 10 9 43 43 H 1.08998 * 110.75713 * 279.62201 * 26 25 10 44 44 H 1.08998 * 110.75473 * 156.25189 * 26 25 10 45 45 H 1.09004 * 110.48321 * 203.37777 * 27 26 25 46 46 H 1.08991 * 110.48606 * 80.73771 * 27 26 25 47 47 H 1.08994 * 110.03628 * 359.94997 * 28 10 9 48 48 H 1.08998 * 110.03026 * 121.38530 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0527 -3.6538 -0.1254 11 6 3.0120 -3.8251 1.0541 12 7 2.2660 -3.7150 2.3101 13 6 2.8915 -3.9232 3.4858 14 8 4.0746 -4.2027 3.5038 15 6 2.1400 -3.8117 4.7514 16 6 0.7804 -3.4911 4.7330 17 6 0.0809 -3.3923 5.9152 18 6 0.7231 -3.6060 7.1293 19 6 2.0791 -3.9225 7.1548 20 6 2.7873 -4.0217 5.9712 21 8 2.7216 -4.1389 8.3354 22 6 2.0697 -3.6650 9.5187 23 6 0.5947 -4.0838 9.4544 24 8 0.0132 -3.4994 8.2840 25 6 1.0590 -4.8327 -0.1741 26 6 0.8679 -5.1062 -1.6866 27 6 2.2899 -4.8796 -2.2573 28 6 2.8353 -3.6835 -1.4500 29 1 -0.4849 0.8400 0.0004 30 1 0.3590 -2.3901 0.0820 31 1 3.7765 -3.0492 1.0163 32 1 3.4858 -4.8051 0.9976 33 1 1.3221 -3.4924 2.2958 34 1 0.2772 -3.3251 3.7919 35 1 -0.9710 -3.1483 5.8989 36 1 3.8392 -4.2655 5.9897 37 1 2.1416 -2.5785 9.5680 38 1 2.5389 -4.1054 10.3984 39 1 0.0721 -3.7268 10.3418 40 1 0.5224 -5.1699 9.3974 41 1 1.4803 -5.7073 0.3215 42 1 0.1113 -4.5521 0.2856 43 1 0.1603 -4.3998 -2.1206 44 1 0.5430 -6.1329 -1.8554 45 1 2.2405 -4.6333 -3.3179 46 1 2.9098 -5.7618 -2.0981 47 1 2.6735 -2.7567 -2.0003 48 1 3.8985 -3.8202 -1.2525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = -74.960990 kcal Electronic energy + Delta-G solvation = -30753.588933 eV Core-core repulsion = 26581.084417 eV Total energy + Delta-G solvation = -4172.504516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43320 -39.64356 -38.32749 -37.46618 -37.08071 -34.14833 -33.33179 -31.57906 -30.78667 -30.59280 -28.96445 -28.29349 -27.59425 -25.31657 -24.49392 -23.36039 -22.65807 -21.87371 -20.42164 -19.81361 -19.09593 -18.51044 -17.70382 -17.39864 -17.07600 -16.37671 -15.76219 -15.60213 -15.28074 -15.07367 -14.70965 -14.63654 -14.51859 -14.13469 -13.95422 -13.90553 -13.67335 -13.36176 -13.19388 -13.05602 -12.59080 -12.54823 -12.04377 -11.83856 -11.55254 -11.34017 -11.21643 -11.01707 -10.83524 -10.68724 -10.68084 -10.57841 -10.49459 -10.34136 -10.07335 -9.83361 -9.66373 -9.56133 -8.93800 -8.77811 -8.49625 -8.17297 -7.03107 -5.82136 -3.11342 0.82320 1.23141 2.71796 2.94865 3.07392 3.41268 3.49278 3.49946 3.71131 3.92529 3.94028 4.41707 4.49610 4.56203 4.58769 4.88908 4.96464 5.08966 5.11747 5.13422 5.14115 5.23775 5.27132 5.29519 5.56679 5.66893 5.71471 5.77099 5.96437 5.98330 6.00234 6.04730 6.10680 6.16018 6.25720 6.28632 6.33059 6.39879 6.45238 6.57619 6.62528 6.67961 6.73922 6.83646 6.99100 7.13783 7.20924 7.72447 8.04047 8.36626 8.65602 9.48650 10.01958 10.37747 11.39830 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.003078 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.007324 B = 9094.718654 C =10337.089421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.118 3.882 12 N -0.693 5.693 13 C 0.555 3.445 14 O -0.553 6.553 15 C -0.123 4.123 16 C -0.073 4.073 17 C -0.119 4.119 18 C 0.070 3.930 19 C 0.036 3.964 20 C -0.055 4.055 21 O -0.306 6.306 22 C 0.020 3.980 23 C 0.020 3.980 24 O -0.305 6.305 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.121 4.121 28 C -0.130 4.130 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.403 0.597 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 -11.631 13.836 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.342 3.658 14 O -0.433 6.433 15 C -0.126 4.126 16 C -0.092 4.092 17 C -0.138 4.138 18 C 0.024 3.976 19 C -0.008 4.008 20 C -0.074 4.074 21 O -0.220 6.220 22 C -0.056 4.056 23 C -0.056 4.056 24 O -0.219 6.219 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.096 0.904 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.015 -11.668 13.854 18.113 hybrid contribution -0.302 1.299 0.310 1.369 sum -0.317 -10.370 14.165 17.558 Atomic orbital electron populations 1.69657 1.04995 1.25527 1.57652 1.24689 0.95407 0.97495 1.02790 0.86224 0.79051 0.84481 0.77118 1.20542 1.21944 1.21967 1.19143 0.91067 0.83765 1.42415 0.91167 1.42559 1.06061 0.99503 1.87285 1.20464 0.91052 0.87303 0.91609 1.21986 0.95271 1.00176 0.83341 1.45690 1.14309 1.69006 1.05298 1.17980 0.86664 0.77627 0.83561 1.90737 1.15389 1.49590 1.87581 1.19761 0.94136 1.05331 0.93399 1.21196 0.93002 0.96692 0.98332 1.20362 1.00912 1.03869 0.88655 1.19132 0.89131 1.02173 0.87149 1.18681 0.89771 1.05615 0.86766 1.20437 1.00688 0.98264 0.88038 1.86342 1.46262 1.76949 1.12493 1.23627 0.93359 1.00892 0.87703 1.23646 0.94583 0.99305 0.88034 1.86282 1.45583 1.74786 1.15278 1.22587 0.99369 0.97626 0.96552 1.22413 0.97336 1.00185 0.95731 1.22309 0.96253 0.98153 0.99124 1.22658 0.98496 0.98872 0.96945 0.93617 0.78165 0.91728 0.92488 0.75993 0.84061 0.84077 0.83539 0.90404 0.86053 0.86048 0.90364 0.91744 0.91564 0.91257 0.92614 0.92457 0.92582 0.89889 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.29 13.07 55.49 0.73 -25.56 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.23 -5.92 8.52 -15.06 -0.13 -6.04 16 8 H 0.07 1.81 7.27 -52.49 -0.38 1.43 16 9 N -0.71 -15.62 4.53 -46.20 -0.21 -15.83 16 10 C 0.19 3.35 0.68 -130.70 -0.09 3.26 16 11 C 0.12 2.15 4.04 -4.04 -0.02 2.14 16 12 N -0.69 -12.13 5.18 -61.32 -0.32 -12.44 16 13 C 0.56 10.10 7.77 -12.43 -0.10 10.00 16 14 O -0.55 -11.60 16.34 5.29 0.09 -11.51 16 15 C -0.12 -1.93 5.87 -104.99 -0.62 -2.55 16 16 C -0.07 -1.01 9.53 -39.23 -0.37 -1.39 16 17 C -0.12 -1.53 9.94 -39.49 -0.39 -1.92 16 18 C 0.07 0.91 6.51 -38.92 -0.25 0.66 16 19 C 0.04 0.50 6.48 -39.18 -0.25 0.25 16 20 C -0.05 -0.83 9.50 -39.03 -0.37 -1.20 16 21 O -0.31 -3.74 10.42 -32.96 -0.34 -4.08 16 22 C 0.02 0.16 7.26 37.40 0.27 0.43 16 23 C 0.02 0.15 7.26 37.40 0.27 0.42 16 24 O -0.31 -3.50 10.41 -32.38 -0.34 -3.83 16 25 C -0.12 -1.85 5.72 -25.08 -0.14 -2.00 16 26 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 27 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 28 C -0.13 -2.23 5.93 -25.61 -0.15 -2.39 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 30 H 0.38 8.97 7.45 -40.82 -0.30 8.67 16 31 H 0.06 1.34 7.46 -51.93 -0.39 0.95 16 32 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 33 H 0.40 6.72 6.01 -40.82 -0.25 6.48 16 34 H 0.14 1.82 6.39 -52.48 -0.34 1.48 16 35 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.15 2.25 7.64 -52.49 -0.40 1.85 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 42 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.66 7.36 -51.93 -0.38 1.27 16 48 H 0.05 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -31.41 387.36 -9.36 -40.77 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.00 Total: 14.12 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.78 Total: -4.40 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.20 Total: -53.84 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.59 Total: -19.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.41 -9.36 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.192 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds