Wall clock time and date at job start Wed Apr 1 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99961 * 2 1 4 4 H 1.48506 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46969 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47079 * 60.00270 * 3 2 1 7 7 C 1.38815 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.46507 * 120.00039 * 174.37719 * 9 7 2 11 11 C 1.52998 * 110.01259 * 61.55001 * 10 9 7 12 12 N 1.46502 * 109.46810 * 55.26301 * 11 10 9 13 13 C 1.34786 * 119.99573 * 175.53651 * 12 11 10 14 14 O 1.21586 * 119.99810 * 359.97438 * 13 12 11 15 15 C 1.47608 * 119.99633 * 179.97438 * 13 12 11 16 16 C 1.39698 * 120.10050 * 0.02562 * 15 13 12 17 17 C 1.37721 * 119.96521 * 179.77662 * 16 15 13 18 18 C 1.39005 * 120.27176 * 0.21622 * 17 16 15 19 19 C 1.39263 * 120.04697 * 359.95053 * 18 17 16 20 20 C 1.38286 * 119.95724 * 0.11835 * 19 18 17 21 21 O 1.36145 * 120.76315 * 180.21196 * 19 18 17 22 22 C 1.43176 * 116.69156 * 342.76387 * 21 19 18 23 23 C 1.53463 * 108.22060 * 46.22953 * 22 21 19 24 24 O 1.35964 * 119.24138 * 179.81204 * 18 17 16 25 25 C 1.54259 * 110.07298 * 182.97188 * 10 9 7 26 26 C 1.54890 * 104.19798 * 95.69718 * 25 10 9 27 27 C 1.54893 * 102.74663 * 37.94217 * 26 25 10 28 28 C 1.53880 * 110.02855 * 300.16311 * 10 9 7 29 29 H 0.96996 * 119.99718 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00315 * 354.38816 * 9 7 2 31 31 H 1.08994 * 109.47340 * 295.26023 * 11 10 9 32 32 H 1.09002 * 109.46893 * 175.26033 * 11 10 9 33 33 H 0.96990 * 120.00566 * 355.53340 * 12 11 10 34 34 H 1.08004 * 120.01382 * 0.04367 * 16 15 13 35 35 H 1.07997 * 119.86346 * 180.24684 * 17 16 15 36 36 H 1.07998 * 120.02482 * 179.90028 * 20 19 18 37 37 H 1.09003 * 109.71011 * 286.55088 * 22 21 19 38 38 H 1.08996 * 109.71260 * 165.91518 * 22 21 19 39 39 H 1.08996 * 109.71219 * 180.49436 * 23 22 21 40 40 H 1.08999 * 109.74109 * 59.89715 * 23 22 21 41 41 H 1.09000 * 110.48380 * 214.37510 * 25 10 9 42 42 H 1.09005 * 110.49166 * 337.01535 * 25 10 9 43 43 H 1.08998 * 110.75713 * 279.62201 * 26 25 10 44 44 H 1.08998 * 110.75473 * 156.25189 * 26 25 10 45 45 H 1.09004 * 110.48321 * 203.37777 * 27 26 25 46 46 H 1.08991 * 110.48606 * 80.73771 * 27 26 25 47 47 H 1.08994 * 110.03628 * 359.94997 * 28 10 9 48 48 H 1.08998 * 110.03026 * 121.38530 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0527 -3.6538 -0.1254 11 6 3.0120 -3.8251 1.0541 12 7 2.2660 -3.7150 2.3101 13 6 2.8915 -3.9232 3.4858 14 8 4.0746 -4.2027 3.5038 15 6 2.1400 -3.8117 4.7514 16 6 0.7804 -3.4911 4.7330 17 6 0.0809 -3.3923 5.9152 18 6 0.7231 -3.6060 7.1293 19 6 2.0791 -3.9225 7.1548 20 6 2.7873 -4.0217 5.9712 21 8 2.7216 -4.1389 8.3354 22 6 2.0697 -3.6650 9.5187 23 6 0.5947 -4.0838 9.4544 24 8 0.0132 -3.4994 8.2840 25 6 1.0590 -4.8327 -0.1741 26 6 0.8679 -5.1062 -1.6866 27 6 2.2899 -4.8796 -2.2573 28 6 2.8353 -3.6835 -1.4500 29 1 -0.4849 0.8400 0.0004 30 1 0.3590 -2.3901 0.0820 31 1 3.7765 -3.0492 1.0163 32 1 3.4858 -4.8051 0.9976 33 1 1.3221 -3.4924 2.2958 34 1 0.2772 -3.3251 3.7919 35 1 -0.9710 -3.1483 5.8989 36 1 3.8392 -4.2655 5.9897 37 1 2.1416 -2.5785 9.5680 38 1 2.5389 -4.1054 10.3984 39 1 0.0721 -3.7268 10.3418 40 1 0.5224 -5.1699 9.3974 41 1 1.4803 -5.7073 0.3215 42 1 0.1113 -4.5521 0.2856 43 1 0.1603 -4.3998 -2.1206 44 1 0.5430 -6.1329 -1.8554 45 1 2.2405 -4.6333 -3.3179 46 1 2.9098 -5.7618 -2.0981 47 1 2.6735 -2.7567 -2.0003 48 1 3.8985 -3.8202 -1.2525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753679643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:51 Heat of formation + Delta-G solvation = -95.029227 kcal Electronic energy + Delta-G solvation = -30754.459157 eV Core-core repulsion = 26581.084417 eV Total energy + Delta-G solvation = -4173.374740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35472 -41.01777 -39.68525 -38.35082 -38.22876 -35.60959 -35.14075 -32.68606 -32.10934 -31.84373 -30.07883 -29.58520 -28.99343 -26.44121 -25.85138 -24.96519 -23.82955 -22.92516 -21.62629 -21.01875 -20.31696 -19.73980 -19.02163 -18.72006 -18.31173 -17.61480 -17.10840 -16.70206 -16.51502 -16.11863 -16.09562 -15.90176 -15.73517 -15.45096 -15.18693 -14.95843 -14.90222 -14.84033 -14.48199 -14.30095 -14.01628 -13.61033 -13.40858 -13.24536 -12.90971 -12.84094 -12.62816 -12.24651 -12.22759 -12.05395 -12.02631 -11.81921 -11.77127 -11.55063 -11.52600 -11.41226 -11.30231 -11.05909 -10.86235 -10.02380 -9.78459 -9.22430 -8.94137 -7.89635 -5.14973 -0.31256 0.17086 1.44086 1.47939 1.54091 1.71021 1.93146 2.10770 2.42133 2.58335 2.71779 3.17879 3.41522 3.58102 3.72109 3.77395 3.87020 3.92292 3.97324 4.00162 4.06076 4.10170 4.18455 4.28300 4.45018 4.53189 4.57768 4.59137 4.70005 4.71658 4.78026 4.87379 4.96029 4.96457 5.01394 5.04668 5.16066 5.18619 5.22357 5.30090 5.35960 5.43134 5.46916 5.56769 5.66276 5.72408 5.80017 6.28381 6.34687 6.61609 7.22503 7.42296 8.14914 8.40665 9.32755 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.003078 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.007324 B = 9094.718654 C =10337.089421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.214 4.214 8 H 0.062 0.938 9 N -0.714 5.714 10 C 0.184 3.816 11 C 0.125 3.875 12 N -0.689 5.689 13 C 0.553 3.447 14 O -0.588 6.588 15 C -0.141 4.141 16 C -0.071 4.071 17 C -0.119 4.119 18 C 0.076 3.924 19 C 0.035 3.965 20 C -0.067 4.067 21 O -0.322 6.322 22 C 0.011 3.989 23 C 0.014 3.986 24 O -0.313 6.313 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.131 4.131 29 H 0.248 0.752 30 H 0.377 0.623 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.408 0.592 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -13.163 15.287 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.226 1.226 7 C -0.346 4.346 8 H 0.080 0.920 9 N -0.355 5.355 10 C 0.094 3.906 11 C -0.001 4.001 12 N -0.339 5.339 13 C 0.342 3.658 14 O -0.471 6.471 15 C -0.145 4.145 16 C -0.090 4.090 17 C -0.138 4.138 18 C 0.030 3.970 19 C -0.010 4.010 20 C -0.087 4.087 21 O -0.237 6.237 22 C -0.063 4.063 23 C -0.061 4.061 24 O -0.227 6.227 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.171 4.171 29 H 0.057 0.943 30 H 0.211 0.789 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.245 0.755 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.153 0.847 37 H 0.097 0.903 38 H 0.175 0.825 39 H 0.177 0.823 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.845 -13.227 15.313 20.253 hybrid contribution 0.005 1.705 0.032 1.706 sum -0.840 -11.522 15.345 19.207 Atomic orbital electron populations 1.69753 1.05785 1.25397 1.59949 1.25186 0.96046 0.99687 1.04467 0.85466 0.78239 0.82000 0.76455 1.20267 1.22300 1.22614 1.19258 0.90777 0.85014 1.39545 0.91989 1.42609 1.05753 1.00076 1.87044 1.20704 0.91622 0.86717 0.91601 1.21872 0.94726 0.99747 0.83784 1.45657 1.14400 1.68771 1.05051 1.18378 0.86377 0.76674 0.84393 1.90704 1.16920 1.51333 1.88123 1.19578 0.94899 1.07684 0.92322 1.21253 0.92174 0.96362 0.99247 1.20606 1.01854 1.03129 0.88193 1.19234 0.88874 1.00840 0.88095 1.18658 0.90094 1.05200 0.87055 1.20396 1.00374 0.99200 0.88751 1.86322 1.47221 1.77093 1.13050 1.24041 0.93893 1.01384 0.87024 1.24051 0.94516 0.99892 0.87608 1.86276 1.45890 1.74914 1.15663 1.22557 0.98492 0.96694 0.97721 1.22399 0.96803 1.01496 0.94530 1.22294 0.96498 0.97411 0.98921 1.22599 0.98976 0.98984 0.96509 0.94293 0.78933 0.94861 0.91150 0.75452 0.83405 0.81905 0.84715 0.90272 0.82470 0.82308 0.89563 0.89843 0.91502 0.92969 0.89624 0.91808 0.90268 0.93130 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.99 13.07 21.65 0.28 -54.71 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.95 45.98 29.55 68.60 2.03 48.00 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 7 C -0.21 -11.04 8.52 84.03 0.72 -10.33 16 8 H 0.06 3.28 7.27 -2.91 -0.02 3.26 16 9 N -0.71 -31.65 4.53 -300.07 -1.36 -33.01 16 10 C 0.18 6.50 0.68 4.33 0.00 6.50 16 11 C 0.12 4.57 4.04 86.38 0.35 4.92 16 12 N -0.69 -24.35 5.18 -466.19 -2.41 -26.76 16 13 C 0.55 20.62 7.77 86.72 0.67 21.30 16 14 O -0.59 -25.50 16.34 -3.99 -0.07 -25.57 16 15 C -0.14 -4.53 5.87 -20.10 -0.12 -4.65 16 16 C -0.07 -1.95 9.53 22.50 0.21 -1.73 16 17 C -0.12 -2.89 9.94 22.33 0.22 -2.67 16 18 C 0.08 1.88 6.51 22.70 0.15 2.02 16 19 C 0.04 0.95 6.48 22.53 0.15 1.09 16 20 C -0.07 -2.09 9.50 22.63 0.22 -1.88 16 21 O -0.32 -7.49 10.42 -83.01 -0.86 -8.35 16 22 C 0.01 0.14 7.26 72.14 0.52 0.67 16 23 C 0.01 0.16 7.26 72.14 0.52 0.68 16 24 O -0.31 -6.38 10.41 -80.95 -0.84 -7.23 16 25 C -0.12 -3.29 5.72 31.67 0.18 -3.11 16 26 C -0.11 -2.97 6.91 31.89 0.22 -2.75 16 27 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 28 C -0.13 -4.44 5.93 31.32 0.19 -4.26 16 29 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.38 17.79 7.45 -92.71 -0.69 17.10 16 31 H 0.03 1.42 7.46 -2.39 -0.02 1.40 16 32 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 33 H 0.41 13.62 6.01 -92.72 -0.56 13.06 16 34 H 0.15 3.73 6.39 -2.91 -0.02 3.71 16 35 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 36 H 0.13 4.38 7.64 -2.91 -0.02 4.35 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 2.07 7.79 -2.39 -0.02 2.06 16 42 H 0.07 1.90 7.72 -2.38 -0.02 1.88 16 43 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 2.04 7.36 -2.39 -0.02 2.03 16 48 H 0.06 1.84 7.67 -2.39 -0.02 1.82 16 Total: -1.00 -69.54 387.36 1.40 -68.14 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.25 Total: 39.34 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.89 Total: 0.15 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.49 Total: -114.48 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.77 Total: -41.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.54 1.40 -68.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.892 kcal (2) G-P(sol) polarization free energy of solvation -69.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds