Wall clock time and date at job start Wed Apr 1 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21247 * 120.00423 * 2 1 4 4 C 1.47186 * 119.99583 * 180.02562 * 2 1 3 5 5 C 1.39751 * 120.13953 * 1.95110 * 4 2 1 6 6 C 1.38592 * 119.74812 * 180.02562 * 5 4 2 7 7 N 1.39762 * 119.99272 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00131 * 326.18358 * 7 6 5 9 9 O 1.21376 * 119.99514 * 354.79194 * 8 7 6 10 10 C 1.49354 * 119.99717 * 174.78716 * 8 7 6 11 11 O 1.21360 * 120.00034 * 3.76608 * 10 8 7 12 12 N 1.34775 * 119.99697 * 183.76396 * 10 8 7 13 13 C 1.46504 * 119.99824 * 2.39382 * 12 10 8 14 14 C 1.50691 * 109.47059 * 80.85001 * 13 12 10 15 15 H 1.07999 * 120.00752 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99888 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99943 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00160 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.47254 * 120.00136 * 18 16 14 21 21 H 1.48500 * 109.47227 * 240.00574 * 18 16 14 22 22 C 1.46501 * 120.00069 * 182.39647 * 12 10 8 23 23 C 1.52990 * 109.47134 * 124.40078 * 22 12 10 24 24 C 1.53000 * 109.46858 * 244.40194 * 22 12 10 25 25 C 1.39084 * 120.01365 * 359.97438 * 6 5 4 26 26 C 1.38247 * 120.27552 * 0.29398 * 25 6 5 27 27 C 1.37958 * 120.25250 * 359.44637 * 26 25 6 28 28 C 1.50702 * 120.00725 * 180.25239 * 27 26 25 29 29 H 1.09006 * 109.47107 * 239.99786 * 1 2 3 30 30 H 1.09000 * 109.47160 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47602 * 119.99878 * 1 2 3 32 32 H 1.07999 * 120.12968 * 0.04321 * 5 4 2 33 33 H 0.96998 * 119.99670 * 146.18531 * 7 6 5 34 34 H 1.09001 * 109.46915 * 200.84915 * 13 12 10 35 35 H 1.08997 * 109.47440 * 320.84287 * 13 12 10 36 36 H 0.97002 * 120.00183 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46805 * 4.39613 * 22 12 10 38 38 H 1.09003 * 109.47655 * 60.00055 * 23 22 12 39 39 H 1.09002 * 109.47170 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.47516 * 299.99878 * 23 22 12 41 41 H 1.09001 * 109.47121 * 59.99733 * 24 22 12 42 42 H 1.09000 * 109.47086 * 179.97438 * 24 22 12 43 43 H 1.09002 * 109.47295 * 299.99739 * 24 22 12 44 44 H 1.07994 * 119.86180 * 180.02562 * 25 6 5 45 45 H 1.08000 * 119.87063 * 179.70232 * 26 25 6 46 46 H 1.09006 * 109.47191 * 262.33358 * 28 27 26 47 47 H 1.08995 * 109.47449 * 22.33917 * 28 27 26 48 48 H 1.09003 * 109.46927 * 142.34263 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 -0.0006 5 6 1.5475 -2.4863 -0.0423 6 6 2.2486 -3.6818 -0.0419 7 7 1.5584 -4.8965 -0.0830 8 6 0.3637 -5.0138 0.5297 9 8 -0.0692 -4.0962 1.1960 10 6 -0.4274 -6.2727 0.3887 11 8 0.0351 -7.2150 -0.2204 12 7 -1.6550 -6.3622 0.9379 13 6 -2.2347 -5.2072 1.6280 14 6 -2.8185 -4.2574 0.6142 15 1 -2.7629 -4.4904 -0.4389 16 6 -3.4236 -3.0907 1.0311 17 7 -3.4909 -2.8067 2.3134 18 14 -4.1467 -1.9129 -0.2256 19 1 -3.9422 -2.4593 -1.5912 20 1 -5.6004 -1.7488 0.0288 21 1 -3.4726 -0.5944 -0.1135 22 6 -2.4095 -7.6145 0.8449 23 6 -2.8024 -8.0787 2.2487 24 6 -3.6719 -7.3885 0.0105 25 6 3.6388 -3.6731 -0.0008 26 6 4.3272 -2.4752 0.0461 27 6 3.6409 -1.2785 0.0408 28 6 4.3971 0.0243 0.0863 29 1 -0.3634 -0.5139 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 0.4681 -2.4910 -0.0749 33 1 1.9393 -5.6550 -0.5524 34 1 -3.0201 -5.5447 2.3042 35 1 -1.4583 -4.6976 2.1986 36 1 -3.9163 -1.9857 2.6067 37 1 -1.7916 -8.3765 0.3697 38 1 -3.4203 -7.3167 2.7238 39 1 -3.3634 -9.0107 2.1795 40 1 -1.9030 -8.2398 2.8432 41 1 -3.3919 -7.0577 -0.9897 42 1 -4.2331 -8.3203 -0.0592 43 1 -4.2898 -6.6264 0.4855 44 1 4.1826 -4.6062 -0.0010 45 1 5.4066 -2.4761 0.0827 46 1 4.4263 0.3919 1.1121 47 1 5.4142 -0.1333 -0.2723 48 1 3.8975 0.7567 -0.5479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577624558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:39 Heat of formation + Delta-G solvation = -64.929317 kcal Electronic energy + Delta-G solvation = -31611.420235 eV Core-core repulsion = 27439.350725 eV Total energy + Delta-G solvation = -4172.069510 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.78851 -39.90201 -38.68043 -37.55253 -36.21848 -34.73235 -32.89198 -32.14188 -31.37252 -31.24282 -29.14189 -27.30569 -26.77483 -26.75266 -24.43081 -23.83008 -23.02547 -21.66944 -20.43928 -19.85112 -18.89293 -17.54475 -16.94943 -16.56896 -16.35561 -15.86076 -15.58402 -15.07593 -14.96392 -14.93689 -14.76177 -14.29735 -14.03819 -13.84480 -13.59985 -13.49914 -13.27878 -13.23239 -12.55117 -12.39314 -12.27871 -12.06927 -11.95729 -11.88687 -11.83272 -11.82234 -11.80434 -11.62517 -11.34483 -11.07597 -10.93016 -10.87430 -10.62140 -10.21868 -10.08357 -10.00108 -9.64470 -9.34025 -9.01140 -8.79679 -8.33191 -7.98376 -7.82565 -6.09688 -4.12382 0.70043 1.29509 2.05526 2.50211 2.78843 3.21082 3.31053 3.33550 3.68281 3.92831 3.99343 4.20778 4.37328 4.74718 4.92319 4.97285 5.05247 5.25293 5.26317 5.33423 5.35252 5.45823 5.53997 5.62863 5.69545 5.71918 5.73226 5.81464 5.96875 5.99239 6.03925 6.08176 6.21647 6.22940 6.26131 6.30864 6.31819 6.44436 6.58599 6.63811 6.69774 6.86208 6.97665 7.28479 7.42408 7.49140 7.65325 7.80174 8.05925 8.14151 8.29162 8.59431 8.90472 9.50240 10.98730 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.004435 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.913064 B = 6312.466103 C = 8470.877721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.402 3.598 3 O -0.462 6.462 4 C -0.157 4.157 5 C -0.067 4.067 6 C 0.138 3.862 7 N -0.662 5.662 8 C 0.496 3.504 9 O -0.439 6.439 10 C 0.508 3.492 11 O -0.564 6.564 12 N -0.552 5.552 13 C 0.216 3.784 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.071 3.929 17 N -0.886 5.886 18 Si 0.882 3.118 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.280 1.280 22 C 0.132 3.868 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.046 4.046 28 C -0.122 4.122 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.417 0.583 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -2.830 -3.447 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.283 3.717 3 O -0.340 6.340 4 C -0.159 4.159 5 C -0.088 4.088 6 C 0.043 3.957 7 N -0.311 5.311 8 C 0.278 3.722 9 O -0.307 6.307 10 C 0.290 3.710 11 O -0.445 6.445 12 N -0.282 5.282 13 C 0.098 3.902 14 C -0.555 4.555 15 H 0.072 0.928 16 C -0.132 4.132 17 N -0.525 5.525 18 Si 0.709 3.291 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.205 1.205 22 C 0.028 3.972 23 C -0.217 4.217 24 C -0.212 4.212 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.047 4.047 28 C -0.179 4.179 29 H 0.124 0.876 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.254 0.746 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.148 0.852 45 H 0.148 0.852 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.384 -1.993 -3.089 11.016 hybrid contribution -0.476 0.140 -0.848 0.983 sum 9.908 -1.853 -3.937 10.821 Atomic orbital electron populations 1.22296 0.93094 1.04940 1.05751 1.22507 0.91811 0.87289 0.70130 1.90425 1.71538 1.34591 1.37428 1.20209 0.93638 0.94588 1.07454 1.21654 1.01872 0.89783 0.95445 1.17582 0.90874 0.85657 1.01551 1.43261 1.20325 1.12759 1.54737 1.20462 0.81467 0.89573 0.80679 1.90900 1.66224 1.39285 1.34250 1.19672 0.83213 0.87203 0.80890 1.90647 1.71106 1.39433 1.43361 1.48391 1.13818 1.14760 1.51211 1.20143 0.95912 0.80974 0.93181 1.21261 1.37003 1.04445 0.92841 0.92785 1.24779 0.96002 0.97400 0.94977 1.69922 1.43809 1.25195 1.13553 0.86705 0.79105 0.81432 0.81827 1.19885 1.21024 1.20546 1.21045 0.93427 0.86274 0.96424 1.22137 1.01722 1.01374 0.96502 1.22070 0.97214 1.01603 1.00292 1.21119 0.92209 0.98969 1.00890 1.20772 0.99768 0.90998 1.02231 1.20165 0.92462 0.95981 0.96085 1.21103 0.98644 0.94686 1.03418 0.87626 0.89955 0.88901 0.82882 0.74582 0.94615 0.90563 0.92862 0.89303 0.91191 0.91928 0.92798 0.92731 0.92778 0.90520 0.85223 0.85247 0.91056 0.92479 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 8.94 36.01 0.32 -2.78 16 2 C 0.40 6.30 7.20 -30.68 -0.22 6.08 16 3 O -0.46 -7.71 13.97 5.59 0.08 -7.63 16 4 C -0.16 -2.40 5.87 -105.09 -0.62 -3.02 16 5 C -0.07 -1.09 8.07 -38.89 -0.31 -1.41 16 6 C 0.14 2.04 6.26 -83.80 -0.52 1.51 16 7 N -0.66 -10.12 5.32 -10.33 -0.05 -10.18 16 8 C 0.50 9.41 7.44 -11.63 -0.09 9.33 16 9 O -0.44 -9.53 10.12 5.47 0.06 -9.47 16 10 C 0.51 10.05 7.64 -11.63 -0.09 9.96 16 11 O -0.56 -11.17 15.82 5.49 0.09 -11.09 16 12 N -0.55 -11.08 2.38 -168.02 -0.40 -11.48 16 13 C 0.22 5.01 4.06 -5.20 -0.02 4.99 16 14 C -0.52 -12.95 7.57 -34.44 -0.26 -13.21 16 15 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 18 Si 0.88 20.09 29.54 -169.99 -5.02 15.07 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 C 0.13 2.25 3.24 -67.93 -0.22 2.03 16 23 C -0.16 -2.37 9.11 37.15 0.34 -2.04 16 24 C -0.15 -2.53 8.98 37.16 0.33 -2.20 16 25 C -0.11 -1.33 9.96 -39.26 -0.39 -1.72 16 26 C -0.12 -1.37 9.65 -39.68 -0.38 -1.75 16 27 C -0.05 -0.62 5.92 -104.12 -0.62 -1.23 16 28 C -0.12 -1.47 8.81 36.01 0.32 -1.15 16 29 H 0.11 1.75 8.13 -51.93 -0.42 1.33 16 30 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 31 H 0.09 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.15 2.80 5.43 -52.49 -0.29 2.52 16 33 H 0.42 5.43 8.29 -40.82 -0.34 5.09 16 34 H 0.04 0.86 6.23 -51.93 -0.32 0.54 16 35 H 0.08 1.94 5.40 -51.93 -0.28 1.66 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.09 1.50 6.92 -51.93 -0.36 1.14 16 38 H 0.07 1.13 6.51 -51.93 -0.34 0.80 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.42 7.42 -51.93 -0.39 1.03 16 44 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.13 1.12 8.05 -52.49 -0.42 0.69 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 48 H 0.09 1.27 5.71 -51.93 -0.30 0.97 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -29.14 393.10 -7.91 -37.06 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.79 Total: 9.99 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.53 Total: 5.13 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.28 Total: -44.98 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: 0.22 Total: -28.19 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.14 -7.91 -37.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577624558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.872 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds