Wall clock time and date at job start Wed Apr 1 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00570 * 2 1 4 4 H 1.48504 * 109.47284 * 275.00961 * 3 2 1 5 5 H 1.48506 * 109.46999 * 35.00723 * 3 2 1 6 6 H 1.48496 * 109.47266 * 155.00750 * 3 2 1 7 7 C 1.38818 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99933 * 186.19835 * 7 2 1 9 9 N 1.36940 * 119.99968 * 6.18961 * 7 2 1 10 10 C 1.46661 * 125.63766 * 354.90752 * 9 7 2 11 11 C 1.54497 * 107.02465 * 182.09171 * 10 9 7 12 12 C 1.56028 * 102.61145 * 22.27325 * 11 10 9 13 13 H 1.09013 * 112.86159 * 202.91726 * 12 11 10 14 14 C 1.53093 * 107.06984 * 78.59749 * 12 11 10 15 15 C 1.51811 * 111.31551 * 195.83098 * 14 12 11 16 16 N 1.47150 * 107.96109 * 56.84429 * 15 14 12 17 17 C 1.34771 * 121.22174 * 123.12114 * 16 15 14 18 18 O 1.21281 * 120.00478 * 179.72180 * 17 16 15 19 19 C 1.50703 * 119.99997 * 359.71928 * 17 16 15 20 20 C 1.53003 * 109.47203 * 187.66856 * 19 17 16 21 21 C 1.53002 * 115.55101 * 69.20900 * 20 19 17 22 22 F 1.39897 * 109.47184 * 66.70894 * 21 20 19 23 23 F 1.39898 * 109.47017 * 306.71002 * 21 20 19 24 24 F 1.39900 * 109.46998 * 186.71204 * 21 20 19 25 25 C 1.52996 * 117.49667 * 214.88101 * 20 19 17 26 26 C 1.52997 * 117.49605 * 283.53709 * 20 19 17 27 27 C 1.46761 * 117.56215 * 302.85153 * 16 15 14 28 28 C 1.46459 * 126.05872 * 174.34983 * 9 7 2 29 29 H 1.09003 * 108.42605 * 269.22079 * 28 9 7 30 30 H 0.97006 * 119.99288 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.44769 * 62.47763 * 10 9 7 32 32 H 1.08994 * 109.61930 * 301.24987 * 10 9 7 33 33 H 1.08999 * 110.78600 * 263.98792 * 11 10 9 34 34 H 1.09007 * 110.93998 * 140.62241 * 11 10 9 35 35 H 1.09004 * 109.25605 * 315.38445 * 14 12 11 36 36 H 1.08998 * 109.25264 * 74.85268 * 14 12 11 37 37 H 1.08992 * 109.45204 * 297.41011 * 15 14 12 38 38 H 1.09010 * 110.08824 * 176.64047 * 15 14 12 39 39 H 1.09000 * 109.47205 * 67.66834 * 19 17 16 40 40 H 1.08997 * 109.47079 * 307.66479 * 19 17 16 41 41 H 1.09003 * 117.49597 * 215.00197 * 25 20 19 42 42 H 1.08996 * 117.50316 * 0.02562 * 25 20 19 43 43 H 1.08997 * 117.50249 * 359.97438 * 26 20 19 44 44 H 1.09008 * 117.49507 * 145.00188 * 26 20 19 45 45 H 1.09002 * 109.23117 * 173.09819 * 27 16 15 46 46 H 1.09004 * 109.22770 * 292.50529 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5048 2.6197 0.8032 6 1 3.5968 1.4117 0.5915 7 6 2.0102 -1.2022 -0.0005 8 1 3.0855 -1.2051 0.1004 9 7 1.3315 -2.3846 -0.1289 10 6 -0.1271 -2.5328 -0.1676 11 6 -0.4257 -4.0453 -0.2683 12 6 0.8790 -4.6884 0.2961 13 1 1.0296 -5.7119 -0.0474 14 6 0.8062 -4.5874 1.8220 15 6 2.1654 -4.8218 2.4561 16 7 3.1066 -3.8447 1.8863 17 6 3.7948 -2.9957 2.6749 18 8 4.5687 -2.2025 2.1821 19 6 3.6027 -3.0318 4.1692 20 6 4.3439 -1.8553 4.8073 21 6 3.7564 -0.4718 4.5212 22 9 2.5021 -0.3626 5.1310 23 9 3.6198 -0.2999 3.1396 24 9 4.6103 0.5120 5.0314 25 6 4.9808 -2.0823 6.1798 26 6 5.8646 -1.9643 4.9356 27 6 3.2730 -3.8325 0.4282 28 6 1.9324 -3.7136 -0.2624 29 1 2.0691 -3.9249 -1.3230 30 1 -0.4849 0.8402 0.0004 31 1 -0.5397 -2.0146 -1.0333 32 1 -0.5604 -2.1290 0.7474 33 1 -0.5847 -4.3399 -1.3056 34 1 -1.2859 -4.3142 0.3448 35 1 0.4662 -3.5898 2.1004 36 1 0.0983 -5.3261 2.1977 37 1 2.5021 -5.8333 2.2293 38 1 2.1030 -4.6869 3.5360 39 1 3.9984 -3.9677 4.5639 40 1 2.5400 -2.9603 4.4007 41 1 4.9813 -1.2460 6.8789 42 1 4.8722 -3.0699 6.6279 43 1 6.3370 -2.8743 4.5658 44 1 6.4465 -1.0503 4.8162 45 1 3.8988 -2.9861 0.1453 46 1 3.7569 -4.7575 0.1144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222882090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:29 Heat of formation + Delta-G solvation = -145.359379 kcal Electronic energy + Delta-G solvation = -34287.960420 eV Core-core repulsion = 29570.546460 eV Total energy + Delta-G solvation = -4717.413960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.04870 -48.65063 -48.46355 -41.39641 -39.89152 -38.26649 -36.46933 -34.61357 -32.89646 -31.59009 -30.07664 -29.80351 -27.58113 -26.47171 -25.26975 -23.80505 -23.51947 -22.04626 -21.72423 -20.90119 -19.66387 -19.36741 -19.21725 -18.46871 -18.31111 -17.93198 -16.95008 -16.50681 -16.22690 -16.01497 -15.82823 -15.63827 -15.40963 -15.18274 -15.01885 -14.99844 -14.76912 -14.67100 -14.63848 -14.24175 -14.12860 -14.02374 -13.72555 -13.36329 -13.14599 -13.03976 -12.93347 -12.66861 -12.57001 -12.48358 -12.43030 -12.26090 -12.07601 -11.69120 -11.61085 -11.39361 -11.34562 -11.21656 -11.08095 -10.65430 -10.48631 -9.36739 -8.78281 -7.85293 -5.12671 1.28285 1.31176 1.43277 1.77731 1.85282 2.15168 2.45674 2.49534 2.85823 2.98345 3.34280 3.41775 3.46576 3.54040 3.72633 3.82796 3.90151 3.99180 4.09588 4.17602 4.37053 4.46055 4.51115 4.54131 4.55550 4.67366 4.67808 4.69240 4.72999 4.78428 4.92503 4.93698 4.96068 5.08092 5.12271 5.17961 5.20265 5.36535 5.58544 5.68909 5.75027 5.80204 5.84106 6.25045 6.69940 7.17395 7.46493 7.86429 8.46881 9.25460 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.006278 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.478799 B = 4459.051485 C = 6078.624616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.937 3.063 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.188 4.188 8 H 0.067 0.933 9 N -0.602 5.602 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.082 4.082 13 H 0.122 0.878 14 C -0.122 4.122 15 C 0.108 3.892 16 N -0.601 5.601 17 C 0.501 3.499 18 O -0.567 6.567 19 C -0.089 4.089 20 C -0.205 4.205 21 C 0.466 3.534 22 F -0.193 7.193 23 F -0.184 7.184 24 F -0.191 7.191 25 C -0.109 4.109 26 C -0.132 4.132 27 C 0.121 3.879 28 C 0.140 3.860 29 H 0.023 0.977 30 H 0.240 0.760 31 H -0.004 1.004 32 H 0.002 0.998 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.158 0.842 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.153 0.847 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.962 -17.151 13.648 22.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.253 4.253 3 Si 0.768 3.232 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.319 4.319 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.102 4.102 13 H 0.140 0.860 14 C -0.160 4.160 15 C -0.013 4.013 16 N -0.334 5.334 17 C 0.290 3.710 18 O -0.446 6.446 19 C -0.128 4.128 20 C -0.206 4.206 21 C 0.412 3.588 22 F -0.174 7.174 23 F -0.165 7.165 24 F -0.173 7.173 25 C -0.146 4.146 26 C -0.169 4.169 27 C -0.003 4.003 28 C 0.034 3.966 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.015 0.985 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.176 0.824 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.171 0.829 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.329 -16.468 13.393 22.457 hybrid contribution -0.224 2.667 -0.816 2.798 sum 7.105 -13.801 12.577 19.978 Atomic orbital electron populations 1.70150 1.05386 1.24122 1.60269 1.25169 0.96134 0.99447 1.04520 0.85622 0.78124 0.82237 0.77171 1.21250 1.22529 1.21059 1.19046 0.90653 0.83648 1.38505 0.91511 1.44296 1.02112 1.01367 1.84927 1.20812 0.83855 0.92404 0.96788 1.23020 0.98217 0.94691 1.00899 1.22390 0.93614 0.98519 0.95634 0.86000 1.21617 0.98144 1.01570 0.94696 1.21815 0.87738 0.92686 0.99048 1.47972 1.42713 1.36421 1.06280 1.20971 0.80362 0.79492 0.90180 1.90704 1.38952 1.38201 1.76725 1.21212 1.02535 0.98732 0.90303 1.22093 1.00457 0.89608 1.08487 1.20238 0.75663 0.88734 0.74135 1.93132 1.44156 1.96866 1.83287 1.93351 1.95604 1.96182 1.31358 1.93093 1.70726 1.66271 1.87198 1.23468 0.96821 1.06664 0.87615 1.23136 0.88121 1.05035 1.00626 1.21147 0.97106 1.01600 0.80481 1.21054 0.93228 0.85912 0.96440 0.95926 0.95083 0.98550 0.97949 0.91572 0.90126 0.95343 0.87980 0.87722 0.87849 0.82423 0.88096 0.87319 0.82868 0.85629 0.89038 0.93323 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.03 10.35 21.65 0.22 -60.80 16 2 C -0.06 -3.78 5.48 84.86 0.47 -3.31 16 3 Si 0.94 52.83 29.56 68.60 2.03 54.86 16 4 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 5 H -0.30 -16.83 7.11 99.48 0.71 -16.12 16 6 H -0.28 -16.40 7.11 99.48 0.71 -15.69 16 7 C -0.19 -11.24 9.71 84.03 0.82 -10.43 16 8 H 0.07 4.18 6.49 -2.91 -0.02 4.16 16 9 N -0.60 -30.80 3.15 -676.07 -2.13 -32.93 16 10 C 0.19 9.29 4.61 86.86 0.40 9.69 16 11 C -0.13 -4.43 6.34 32.15 0.20 -4.22 16 12 C -0.08 -2.33 3.65 -9.37 -0.03 -2.37 16 13 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 14 C -0.12 -3.12 4.99 30.23 0.15 -2.97 16 15 C 0.11 2.21 6.32 85.86 0.54 2.76 16 16 N -0.60 -18.59 2.97 -825.03 -2.45 -21.03 16 17 C 0.50 17.12 7.04 87.66 0.62 17.73 16 18 O -0.57 -24.98 12.98 -3.03 -0.04 -25.02 16 19 C -0.09 -2.07 4.04 29.85 0.12 -1.95 16 20 C -0.20 -5.28 1.31 -52.18 -0.07 -5.35 16 21 C 0.47 17.14 3.07 71.98 0.22 17.36 16 22 F -0.19 -7.17 17.31 44.97 0.78 -6.39 16 23 F -0.18 -9.06 14.13 44.97 0.64 -8.42 16 24 F -0.19 -6.70 15.91 44.97 0.72 -5.98 16 25 C -0.11 -1.65 9.67 30.62 0.30 -1.35 16 26 C -0.13 -2.76 9.31 30.62 0.28 -2.48 16 27 C 0.12 4.24 5.66 85.76 0.49 4.73 16 28 C 0.14 5.38 3.00 44.77 0.13 5.51 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.24 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.00 -0.21 7.46 -2.39 -0.02 -0.23 16 32 H 0.00 0.13 7.17 -2.39 -0.02 0.11 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.40 7.99 -2.38 -0.02 2.38 16 35 H 0.03 1.03 6.94 -2.39 -0.02 1.01 16 36 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.58 5.97 -2.38 -0.01 1.56 16 39 H 0.16 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.10 2.38 7.40 -2.39 -0.02 2.36 16 41 H 0.11 1.62 7.98 -2.39 -0.02 1.61 16 42 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.09 2.18 7.59 -2.38 -0.02 2.16 16 45 H 0.05 2.18 5.55 -2.39 -0.01 2.16 16 46 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -86.45 363.93 5.41 -81.04 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.00 Total: 1.34 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: 4.64 Total: 23.35 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -4.35 Total: -114.77 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.04 Total: -25.02 kcal Atomic # 9 Polarization: -22.93 SS G_CDS: 2.13 Total: -20.80 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.03 Total: 54.86 kcal Total: -86.45 5.41 -81.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222882090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.319 kcal (2) G-P(sol) polarization free energy of solvation -86.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds