Wall clock time and date at job start Wed Apr 1 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48505 * 109.47041 * 239.99644 * 3 2 1 5 5 H 1.48501 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47311 * 120.00023 * 3 2 1 7 7 C 1.38815 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99846 * 180.02562 * 7 2 1 9 9 N 1.36928 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.48163 * 126.40941 * 359.97222 * 9 7 2 11 11 C 1.55290 * 107.04540 * 175.09525 * 10 9 7 12 12 C 1.53475 * 101.87950 * 337.58506 * 11 10 9 13 13 H 1.08994 * 111.80502 * 280.77208 * 12 11 10 14 14 C 1.52245 * 114.91648 * 152.78841 * 12 11 10 15 15 N 1.47726 * 106.45767 * 190.37741 * 14 12 11 16 16 C 1.34773 * 119.68081 * 232.00542 * 15 14 12 17 17 O 1.21286 * 119.99911 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00165 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47272 * 174.32273 * 18 16 15 20 20 C 1.52995 * 115.55045 * 292.94967 * 19 18 16 21 21 F 1.39896 * 109.47088 * 68.55721 * 20 19 18 22 22 F 1.39899 * 109.47109 * 188.56062 * 20 19 18 23 23 F 1.39907 * 109.46827 * 308.55737 * 20 19 18 24 24 C 1.52998 * 117.49630 * 147.27880 * 19 18 16 25 25 C 1.52997 * 117.49699 * 78.62223 * 19 18 16 26 26 C 1.46597 * 120.63609 * 52.02069 * 15 14 12 27 27 C 1.53961 * 110.57516 * 312.15769 * 26 15 14 28 28 C 1.45470 * 126.40452 * 179.97438 * 9 7 2 29 29 H 1.08999 * 109.26995 * 94.43205 * 28 9 7 30 30 H 0.97006 * 119.99797 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.92044 * 294.44566 * 10 9 7 32 32 H 1.08999 * 109.91788 * 55.55086 * 10 9 7 33 33 H 1.09002 * 110.95363 * 95.65908 * 11 10 9 34 34 H 1.09000 * 110.95976 * 219.35124 * 11 10 9 35 35 H 1.08993 * 110.07163 * 71.10855 * 14 12 11 36 36 H 1.09001 * 110.06522 * 309.63599 * 14 12 11 37 37 H 1.08999 * 109.46801 * 294.32011 * 18 16 15 38 38 H 1.08998 * 109.47326 * 54.31889 * 18 16 15 39 39 H 1.09002 * 117.49799 * 359.97438 * 24 19 18 40 40 H 1.08994 * 117.49974 * 145.02136 * 24 19 18 41 41 H 1.09003 * 117.49902 * 214.98291 * 25 19 18 42 42 H 1.09005 * 117.49922 * 359.97065 * 25 19 18 43 43 H 1.09010 * 109.25230 * 72.43630 * 26 15 14 44 44 H 1.08992 * 109.25712 * 191.90972 * 26 15 14 45 45 H 1.08998 * 109.87670 * 170.51296 * 27 26 15 46 46 H 1.08994 * 109.87744 * 291.59578 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1469 -2.5533 0.0006 11 6 -0.4342 -4.0741 -0.1264 12 6 0.8662 -4.5897 -0.7576 13 1 0.8974 -4.4021 -1.8309 14 6 1.2008 -6.0410 -0.4423 15 7 2.5824 -6.2643 -0.9152 16 6 2.8489 -7.3035 -1.7309 17 8 1.9565 -8.0503 -2.0728 18 6 4.2558 -7.5384 -2.2172 19 6 4.3113 -8.8494 -3.0040 20 6 4.0740 -10.1204 -2.1860 21 9 2.7418 -10.1592 -1.7606 22 9 4.3435 -11.2417 -2.9780 23 9 4.9197 -10.1224 -1.0715 24 6 5.3001 -8.9330 -4.1685 25 6 3.7982 -8.8306 -4.4452 26 6 3.6665 -5.3665 -0.5055 27 6 3.2477 -3.8957 -0.6843 28 6 1.9077 -3.7211 0.0005 29 1 1.9788 -4.0826 1.0264 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5632 -2.1733 0.9335 32 1 -0.5806 -2.0186 -0.8445 33 1 -0.5953 -4.5235 0.8535 34 1 -1.2860 -4.2566 -0.7815 35 1 0.5141 -6.7056 -0.9664 36 1 1.1409 -6.2137 0.6323 37 1 4.5594 -6.7142 -2.8626 38 1 4.9302 -7.5983 -1.3630 39 1 5.9108 -8.0539 -4.3743 40 1 5.7813 -9.8936 -4.3521 41 1 3.2917 -9.7239 -4.8108 42 1 3.4205 -7.8843 -4.8327 43 1 3.9061 -5.5472 0.5425 44 1 4.5478 -5.5654 -1.1152 45 1 3.9877 -3.2411 -0.2239 46 1 3.1546 -3.6633 -1.7451 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568513116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:14 Heat of formation + Delta-G solvation = -145.508356 kcal Electronic energy + Delta-G solvation = -32216.839899 eV Core-core repulsion = 27499.419479 eV Total energy + Delta-G solvation = -4717.420420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.01470 -48.60259 -48.42384 -41.52043 -39.95347 -38.35527 -36.71365 -34.56108 -32.99823 -31.86732 -30.58804 -29.30790 -27.52601 -26.64911 -24.88707 -23.72327 -23.50951 -22.04532 -21.78130 -21.08711 -20.10343 -19.34919 -19.20451 -18.67039 -18.24294 -17.74869 -16.94846 -16.68573 -16.39615 -15.98702 -15.78619 -15.64720 -15.42391 -15.15844 -14.99674 -14.96240 -14.86538 -14.68721 -14.63611 -14.47106 -14.10212 -14.00466 -13.81153 -13.38369 -13.16513 -13.11864 -13.01119 -12.63082 -12.49261 -12.47011 -12.44499 -12.09237 -12.01033 -11.76613 -11.67939 -11.59130 -11.50417 -11.35991 -10.97176 -10.68728 -10.61784 -9.61975 -8.86126 -7.81567 -5.16197 1.47548 1.50488 1.56473 1.66644 1.80676 1.92612 2.41029 2.52439 2.85593 2.97546 3.37289 3.41732 3.45343 3.49121 3.60780 3.82418 3.86959 3.90932 4.01012 4.10850 4.23769 4.26474 4.43379 4.47578 4.51225 4.54323 4.66622 4.69828 4.71161 4.74713 4.85206 4.87798 4.94314 4.95757 5.07389 5.10024 5.13522 5.25443 5.48470 5.56014 5.59044 5.66850 5.77706 6.22186 6.45321 7.10547 7.21678 7.81430 8.50655 9.30338 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.022863 B = 0.002624 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.382337 B =10667.012029 C =11209.666948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.229 4.229 8 H 0.091 0.909 9 N -0.616 5.616 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.107 4.107 13 H 0.063 0.937 14 C 0.136 3.864 15 N -0.611 5.611 16 C 0.499 3.501 17 O -0.560 6.560 18 C -0.098 4.098 19 C -0.201 4.201 20 C 0.479 3.521 21 F -0.179 7.179 22 F -0.187 7.187 23 F -0.187 7.187 24 C -0.117 4.117 25 C -0.140 4.140 26 C 0.116 3.884 27 C -0.122 4.122 28 C 0.156 3.844 29 H 0.018 0.982 30 H 0.244 0.756 31 H 0.001 0.999 32 H 0.017 0.983 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.544 -19.532 -6.849 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.227 1.227 6 H -0.202 1.202 7 C -0.358 4.358 8 H 0.108 0.892 9 N -0.340 5.340 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.127 4.127 13 H 0.081 0.919 14 C 0.014 3.986 15 N -0.344 5.344 16 C 0.288 3.712 17 O -0.438 6.438 18 C -0.137 4.137 19 C -0.203 4.203 20 C 0.425 3.575 21 F -0.160 7.160 22 F -0.169 7.169 23 F -0.168 7.168 24 C -0.154 4.154 25 C -0.177 4.177 26 C -0.006 4.006 27 C -0.161 4.161 28 C 0.049 3.951 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.035 0.965 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.133 0.867 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.046 -19.730 -6.977 24.661 hybrid contribution -0.548 1.145 0.550 1.383 sum 12.498 -18.585 -6.428 23.301 Atomic orbital electron populations 1.70171 1.06459 1.25122 1.58823 1.25652 0.96498 1.01089 1.03211 0.85190 0.77090 0.78987 0.78320 1.20067 1.22737 1.20235 1.19403 0.91129 0.83313 1.41992 0.89176 1.44494 1.02133 1.00975 1.86402 1.21280 0.83949 0.91493 0.97490 1.22522 0.97147 0.95632 1.00860 1.22396 0.96342 0.94793 0.99200 0.91850 1.21372 0.82996 0.94675 0.99607 1.48351 1.09435 1.28199 1.48389 1.21169 0.92043 0.80070 0.77953 1.90742 1.48876 1.46447 1.57778 1.21328 0.93743 0.95978 1.02658 1.22095 1.14342 0.91818 0.92034 1.19793 0.73937 0.85370 0.78400 1.93278 1.35495 1.96663 1.90579 1.93130 1.93723 1.55910 1.74108 1.93149 1.71481 1.96843 1.55365 1.23458 0.92239 1.06611 0.93054 1.23115 0.97918 1.05069 0.91632 1.21910 0.89215 0.87357 1.02136 1.21803 0.97168 0.96426 1.00729 1.20880 0.93618 0.84849 0.95719 0.96495 0.94678 0.98033 0.96491 0.90665 0.90616 0.89794 0.90648 0.83866 0.85776 0.84003 0.86697 0.88418 0.86684 0.90215 0.86239 0.90480 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.63 10.43 21.65 0.23 -57.41 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 3 Si 0.98 44.84 29.55 68.60 2.03 46.87 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.23 -12.29 9.88 84.04 0.83 -11.46 16 8 H 0.09 4.47 7.21 -2.91 -0.02 4.45 16 9 N -0.62 -30.46 3.35 -669.94 -2.25 -32.70 16 10 C 0.18 9.05 5.46 86.85 0.47 9.52 16 11 C -0.12 -4.52 6.53 31.54 0.21 -4.32 16 12 C -0.11 -3.63 2.85 -10.07 -0.03 -3.65 16 13 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 14 C 0.14 3.86 5.95 85.89 0.51 4.37 16 15 N -0.61 -14.84 3.00 -817.99 -2.46 -17.30 16 16 C 0.50 11.93 7.39 87.66 0.65 12.58 16 17 O -0.56 -17.47 12.52 -3.05 -0.04 -17.51 16 18 C -0.10 -1.42 3.78 29.85 0.11 -1.31 16 19 C -0.20 -3.21 1.34 -52.18 -0.07 -3.28 16 20 C 0.48 10.34 3.03 71.98 0.22 10.56 16 21 F -0.18 -5.13 14.23 44.97 0.64 -4.49 16 22 F -0.19 -3.89 15.92 44.97 0.72 -3.18 16 23 F -0.19 -3.98 16.84 44.97 0.76 -3.22 16 24 C -0.12 -1.06 9.63 30.62 0.29 -0.77 16 25 C -0.14 -2.01 9.54 30.62 0.29 -1.72 16 26 C 0.12 2.32 6.15 86.69 0.53 2.85 16 27 C -0.12 -3.55 5.49 30.43 0.17 -3.38 16 28 C 0.16 5.86 2.57 45.51 0.12 5.98 16 29 H 0.02 0.67 7.90 -2.39 -0.02 0.65 16 30 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.00 0.08 7.77 -2.39 -0.02 0.06 16 32 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 33 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.08 2.52 6.99 -2.39 -0.02 2.51 16 36 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 37 H 0.14 1.26 7.75 -2.39 -0.02 1.24 16 38 H 0.12 1.36 7.40 -2.39 -0.02 1.34 16 39 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.11 0.96 7.54 -2.39 -0.02 0.94 16 41 H 0.10 1.55 8.03 -2.39 -0.02 1.53 16 42 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.12 1.45 5.88 -2.39 -0.01 1.43 16 45 H 0.08 2.25 7.62 -2.39 -0.02 2.23 16 46 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -72.57 366.87 5.40 -67.17 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.00 Total: 9.38 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 4.77 Total: 12.39 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.47 Total: -107.41 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.04 Total: -17.51 kcal Atomic # 9 Polarization: -13.00 SS G_CDS: 2.11 Total: -10.89 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.57 5.40 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568513116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.341 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds