Wall clock time and date at job start Wed Apr 1 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.53969 * 2 1 4 4 C 1.53096 * 109.50453 * 120.10779 * 2 1 3 5 5 N 1.47013 * 109.25732 * 176.78450 * 4 2 1 6 6 C 1.46902 * 111.00303 * 177.60753 * 5 4 2 7 7 C 1.52995 * 109.47441 * 169.99878 * 6 5 4 8 8 N 1.46500 * 109.47298 * 179.97438 * 7 6 5 9 9 S 1.65598 * 120.00011 * 165.00228 * 8 7 6 10 10 O 1.42104 * 104.27721 * 308.92614 * 9 8 7 11 11 O 1.42102 * 104.27547 * 181.07217 * 9 8 7 12 12 C 1.81402 * 104.44974 * 65.00162 * 9 8 7 13 13 C 1.53001 * 109.46891 * 186.02560 * 12 9 8 14 14 C 1.50694 * 115.55090 * 299.71367 * 13 12 9 15 15 H 1.08005 * 120.00400 * 95.16752 * 14 13 12 16 16 C 1.37881 * 120.00174 * 275.16424 * 14 13 12 17 17 N 1.31519 * 119.99560 * 7.14695 * 16 14 13 18 18 Si 1.86794 * 120.00267 * 187.14069 * 16 14 13 19 19 H 1.48506 * 109.47024 * 270.00356 * 18 16 14 20 20 H 1.48501 * 109.47294 * 29.99973 * 18 16 14 21 21 H 1.48499 * 109.47472 * 150.00325 * 18 16 14 22 22 C 1.53003 * 117.49782 * 85.38231 * 13 12 9 23 23 C 1.53000 * 117.49822 * 154.04317 * 13 12 9 24 24 C 1.47019 * 110.75341 * 301.38286 * 5 4 2 25 25 C 1.53096 * 109.25617 * 58.61783 * 24 5 4 26 26 O 1.43013 * 109.50853 * 239.89316 * 2 1 3 27 27 H 1.08993 * 109.47274 * 299.89050 * 1 2 3 28 28 H 1.09001 * 109.47136 * 59.89757 * 1 2 3 29 29 H 1.09002 * 109.46854 * 179.88702 * 1 2 3 30 30 H 1.09006 * 109.46588 * 180.10788 * 3 2 1 31 31 H 1.08997 * 109.46818 * 300.10345 * 3 2 1 32 32 H 1.08994 * 109.47169 * 60.11144 * 3 2 1 33 33 H 1.08999 * 109.50662 * 56.85086 * 4 2 1 34 34 H 1.09002 * 109.54389 * 296.74185 * 4 2 1 35 35 H 1.09003 * 109.46956 * 49.99705 * 6 5 4 36 36 H 1.09006 * 109.47112 * 290.00315 * 6 5 4 37 37 H 1.09005 * 109.46856 * 60.00394 * 7 6 5 38 38 H 1.08996 * 109.47200 * 300.00258 * 7 6 5 39 39 H 0.97001 * 120.00090 * 345.00031 * 8 7 6 40 40 H 1.08999 * 109.47001 * 66.02450 * 12 9 8 41 41 H 1.08995 * 109.46816 * 306.02411 * 12 9 8 42 42 H 0.96992 * 120.00150 * 355.42589 * 17 16 14 43 43 H 1.08998 * 117.50208 * 214.99989 * 22 13 12 44 44 H 1.08999 * 117.49652 * 0.02653 * 22 13 12 45 45 H 1.09002 * 117.49607 * 359.97438 * 23 13 12 46 46 H 1.09001 * 117.50205 * 144.97246 * 23 13 12 47 47 H 1.08997 * 109.50808 * 178.54643 * 24 5 4 48 48 H 1.08994 * 109.50846 * 298.68306 * 24 5 4 49 49 H 1.09000 * 109.50723 * 183.21554 * 25 24 5 50 50 H 1.09006 * 109.54568 * 63.10579 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0412 -0.7239 1.2484 5 7 3.5092 -0.7884 1.2045 6 6 4.0446 -1.4268 2.4144 7 6 5.5380 -1.7019 2.2277 8 7 6.0720 -2.3380 3.4345 9 16 7.5504 -3.0830 3.3928 10 8 7.4730 -3.9527 2.2716 11 8 7.7217 -3.5955 4.7070 12 6 8.7261 -1.7385 3.0756 13 6 10.1243 -2.3228 2.8646 14 6 10.6843 -3.1036 4.0255 15 1 10.5779 -4.1780 4.0553 16 6 11.3328 -2.4465 5.0496 17 7 11.3408 -1.1318 5.0862 18 14 12.1996 -3.4233 6.3851 19 1 11.2504 -3.6959 7.4942 20 1 12.6852 -4.7088 5.8221 21 1 13.3523 -2.6420 6.9009 22 6 10.4876 -2.7944 1.4551 23 6 11.1080 -1.5130 2.0177 24 6 3.9640 -1.4884 -0.0057 25 6 3.4335 -0.7568 -1.2415 26 8 2.0076 -0.6762 -1.1662 27 1 -0.3633 0.5121 0.8909 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3633 -1.0277 -0.0020 30 1 3.1318 1.4405 -0.0019 31 1 1.6775 1.9566 -0.8890 32 1 1.6807 1.9556 0.8909 33 1 1.6331 -1.7343 1.2760 34 1 1.7272 -0.1801 2.1394 35 1 3.5214 -2.3666 2.5912 36 1 3.9010 -0.7649 3.2684 37 1 6.0612 -0.7621 2.0510 38 1 5.6816 -2.3638 1.3737 39 1 5.5597 -2.3228 4.2580 40 1 8.7407 -1.0599 3.9284 41 1 8.4217 -1.1930 2.1824 42 1 10.9484 -0.6240 4.3589 43 1 11.1317 -3.6693 1.3675 44 1 9.7307 -2.6879 0.6781 45 1 10.7589 -0.5641 1.6104 46 1 12.1602 -1.5446 2.3004 47 1 5.0536 -1.5020 -0.0307 48 1 3.5866 -2.5110 0.0018 49 1 3.7202 -1.3042 -2.1395 50 1 3.8534 0.2484 -1.2784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329639606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:44 Heat of formation + Delta-G solvation = -92.299755 kcal Electronic energy + Delta-G solvation = -29762.682677 eV Core-core repulsion = 25724.870247 eV Total energy + Delta-G solvation = -4037.812430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.44345 -37.18924 -37.09998 -36.30684 -35.19977 -34.49825 -33.90961 -32.00292 -29.74411 -28.42909 -28.34356 -27.64152 -25.00492 -24.82083 -23.87456 -21.44635 -21.34953 -19.97697 -19.63622 -18.85291 -17.18222 -16.90150 -16.85461 -16.50735 -16.03044 -15.73498 -15.34422 -15.10657 -15.07955 -14.49655 -14.25354 -14.05094 -13.93292 -13.74390 -13.38041 -13.17392 -12.83905 -12.62538 -12.51792 -12.46265 -12.25835 -12.06977 -11.89283 -11.78841 -11.48997 -11.45270 -11.34033 -11.30906 -11.19208 -11.10815 -10.78536 -10.66853 -10.56512 -10.38395 -10.11310 -9.86374 -9.76797 -9.35056 -8.70832 -8.69037 -8.49884 -8.35390 -6.48117 -4.27009 0.94296 3.14798 3.41841 3.45223 3.48029 3.62409 3.63354 4.31687 4.42384 4.47180 4.51466 4.58489 4.65938 4.74329 4.79086 4.88100 4.95050 4.99764 5.04915 5.15310 5.18910 5.23076 5.27829 5.28616 5.31954 5.41083 5.48631 5.53063 5.55484 5.60006 5.65327 5.70704 5.74510 5.80900 5.96795 6.02084 6.05378 6.14918 6.32005 6.51018 6.57900 6.58548 6.72795 6.92541 6.98888 7.13942 7.15060 8.01027 8.31704 8.74828 9.52291 10.91998 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.002476 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.674473 B =11305.479985 C =11632.911903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 C -0.169 4.169 4 C 0.031 3.969 5 N -0.531 5.531 6 C 0.050 3.950 7 C 0.112 3.888 8 N -1.133 6.133 9 S 2.618 3.382 10 O -0.972 6.972 11 O -0.944 6.944 12 C -0.566 4.566 13 C 0.022 3.978 14 C -0.593 4.593 15 H 0.062 0.938 16 C 0.040 3.960 17 N -0.897 5.897 18 Si 1.066 2.934 19 H -0.282 1.282 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.190 4.190 23 C -0.164 4.164 24 C 0.004 3.996 25 C 0.062 3.938 26 O -0.378 6.378 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.275 0.725 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.099 0.901 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 5.372 -9.682 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 C -0.226 4.226 4 C -0.097 4.097 5 N -0.256 5.256 6 C -0.079 4.079 7 C -0.015 4.015 8 N -0.891 5.891 9 S 2.714 3.286 10 O -0.962 6.962 11 O -0.934 6.934 12 C -0.699 4.699 13 C 0.019 3.981 14 C -0.630 4.630 15 H 0.080 0.920 16 C -0.167 4.167 17 N -0.531 5.531 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.227 4.227 23 C -0.203 4.203 24 C -0.124 4.124 25 C -0.015 4.015 26 O -0.297 6.297 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.245 0.755 40 H 0.145 0.855 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.114 0.886 48 H 0.066 0.934 49 H 0.117 0.883 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.425 4.995 -8.463 20.882 hybrid contribution -1.063 -0.030 -0.954 1.429 sum -19.488 4.966 -9.417 22.206 Atomic orbital electron populations 1.21747 0.92224 1.02850 1.02754 1.21550 0.94492 0.91970 0.84614 1.22282 1.03069 0.95195 1.02064 1.22797 0.87573 1.00133 0.99247 1.62258 1.08927 1.52440 1.02009 1.22309 0.94227 0.98278 0.93115 1.21347 0.94387 0.98062 0.87685 1.56000 1.38649 1.76065 1.18348 1.04805 0.73116 0.76208 0.74445 1.93493 1.85645 1.62174 1.54854 1.93567 1.84441 1.77112 1.38286 1.30095 1.13294 1.17288 1.09210 1.18548 0.88534 0.99513 0.91473 1.21413 1.41271 0.94537 1.05812 0.91963 1.25826 0.94742 0.96746 0.99427 1.70739 1.43156 1.06002 1.33164 0.83588 0.76578 0.74852 0.75611 1.20799 1.21091 1.20904 1.23045 1.03825 0.98593 0.97264 1.22795 0.99509 0.93214 1.04818 1.23003 1.02007 0.96707 0.90660 1.22691 0.81067 1.00541 0.97229 1.88025 1.21109 1.77778 1.42773 0.90945 0.91471 0.91912 0.90814 0.92369 0.91724 0.93786 0.89562 0.93676 0.89547 0.91092 0.90245 0.75530 0.85496 0.88245 0.91364 0.89261 0.90667 0.91187 0.89273 0.88642 0.93423 0.88298 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 2 C 0.11 0.95 1.11 -90.57 -0.10 0.85 16 3 C -0.17 -1.30 8.17 37.16 0.30 -1.00 16 4 C 0.03 0.26 4.32 -3.71 -0.02 0.25 16 5 N -0.53 -5.05 4.24 -234.31 -0.99 -6.05 16 6 C 0.05 0.49 5.42 -3.83 -0.02 0.47 16 7 C 0.11 1.34 5.40 -4.04 -0.02 1.32 16 8 N -1.13 -16.22 5.89 -10.61 -0.06 -16.28 16 9 S 2.62 52.19 5.10 -107.50 -0.55 51.64 16 10 O -0.97 -21.13 17.50 -57.54 -1.01 -22.13 16 11 O -0.94 -22.56 17.57 -57.54 -1.01 -23.57 16 12 C -0.57 -11.51 5.87 37.16 0.22 -11.29 16 13 C 0.02 0.52 0.95 -155.66 -0.15 0.37 16 14 C -0.59 -16.36 7.88 -34.44 -0.27 -16.63 16 15 H 0.06 1.77 7.82 -52.48 -0.41 1.36 16 16 C 0.04 1.11 5.39 -17.82 -0.10 1.02 16 17 N -0.90 -25.68 13.57 55.43 0.75 -24.93 16 18 Si 1.07 25.34 29.91 -169.99 -5.08 20.25 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.19 -4.08 9.95 -26.69 -0.27 -4.34 16 23 C -0.16 -3.61 8.74 -26.69 -0.23 -3.85 16 24 C 0.00 0.04 4.94 -3.71 -0.02 0.02 16 25 C 0.06 0.54 6.61 37.21 0.25 0.79 16 26 O -0.38 -3.84 10.28 -35.23 -0.36 -4.20 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.64 6.12 -51.93 -0.32 0.32 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.99 5.83 -51.93 -0.30 0.69 16 39 H 0.41 5.08 8.62 -34.47 -0.30 4.79 16 40 H 0.13 2.66 7.79 -51.92 -0.40 2.26 16 41 H 0.10 1.65 8.11 -51.93 -0.42 1.23 16 42 H 0.28 7.65 6.17 -40.82 -0.25 7.40 16 43 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 47 H 0.10 0.88 6.05 -51.93 -0.31 0.57 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.53 6.49 -51.93 -0.34 0.20 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -34.08 402.20 -10.97 -45.05 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.61 Total: 6.77 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -0.10 Total: -32.61 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.30 Total: -47.26 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -2.38 Total: -49.90 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Atomic # 16 Polarization: 52.19 SS G_CDS: -0.55 Total: 51.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.08 -10.97 -45.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329639606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.250 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds