Wall clock time and date at job start Wed Apr 1 2020 04:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.51530 * 2 1 4 4 C 1.53243 * 109.49502 * 239.92918 * 2 1 3 5 5 N 1.47080 * 108.51928 * 186.21051 * 4 2 1 6 6 S 1.65601 * 120.88117 * 231.16380 * 5 4 2 7 7 O 1.42100 * 104.27609 * 26.09287 * 6 5 4 8 8 O 1.42102 * 104.27803 * 153.95016 * 6 5 4 9 9 C 1.81394 * 104.44871 * 270.02402 * 6 5 4 10 10 C 1.53006 * 109.47181 * 180.82523 * 9 6 5 11 11 C 1.50697 * 115.54937 * 42.62266 * 10 9 6 12 12 H 1.07999 * 120.00342 * 270.96245 * 11 10 9 13 13 C 1.37880 * 119.99986 * 90.95930 * 11 10 9 14 14 N 1.31513 * 119.99935 * 3.79607 * 13 11 10 15 15 Si 1.86801 * 120.00131 * 183.79122 * 13 11 10 16 16 H 1.48503 * 109.46956 * 60.00141 * 15 13 11 17 17 H 1.48501 * 109.46896 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46882 * 300.00168 * 15 13 11 19 19 C 1.52997 * 117.49842 * 256.91524 * 10 9 6 20 20 C 1.52995 * 60.00051 * 252.50958 * 19 10 9 21 21 C 1.47080 * 118.23961 * 51.18362 * 5 4 2 22 22 C 1.53238 * 108.52262 * 308.81959 * 21 5 4 23 23 N 1.46897 * 109.34383 * 53.82380 * 22 21 5 24 24 C 1.46900 * 111.00189 * 172.74885 * 23 22 21 25 25 C 1.52999 * 109.46970 * 293.33731 * 24 23 22 26 26 O 1.42898 * 109.47373 * 71.68886 * 25 24 23 27 27 H 1.08998 * 109.47334 * 299.93547 * 1 2 3 28 28 H 1.09002 * 109.46890 * 59.94063 * 1 2 3 29 29 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47017 * 178.58957 * 3 2 1 31 31 H 1.09008 * 109.46914 * 298.58702 * 3 2 1 32 32 H 1.09004 * 109.47321 * 58.58231 * 3 2 1 33 33 H 1.08996 * 109.62387 * 66.50454 * 4 2 1 34 34 H 1.08992 * 109.62554 * 305.91757 * 4 2 1 35 35 H 1.09000 * 109.47410 * 300.82666 * 9 6 5 36 36 H 1.09004 * 109.47505 * 60.82451 * 9 6 5 37 37 H 0.96999 * 120.00490 * 185.00284 * 14 13 11 38 38 H 1.09001 * 117.49884 * 359.97438 * 19 10 9 39 39 H 1.09000 * 117.49884 * 145.02205 * 19 10 9 40 40 H 1.09000 * 117.50377 * 252.51027 * 20 19 10 41 41 H 1.09007 * 117.50145 * 107.49317 * 20 19 10 42 42 H 1.09000 * 109.62997 * 189.10451 * 21 5 4 43 43 H 1.09001 * 109.62695 * 68.52530 * 21 5 4 44 44 H 1.09002 * 109.49169 * 293.86608 * 22 21 5 45 45 H 1.09000 * 109.49103 * 173.79101 * 22 21 5 46 46 H 1.08997 * 109.47260 * 173.33545 * 24 23 22 47 47 H 1.09002 * 109.46762 * 53.33456 * 24 23 22 48 48 H 1.09001 * 109.47139 * 191.68732 * 25 24 23 49 49 H 1.08996 * 109.47394 * 311.68564 * 25 24 23 50 50 H 0.96700 * 114.00411 * 184.93336 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0414 -0.7238 -1.2501 5 7 3.5043 -0.8432 -1.1552 6 16 4.4793 -0.3595 -2.4033 7 8 3.7177 0.6317 -3.0791 8 8 5.7136 -0.0353 -1.7784 9 6 4.6585 -1.8391 -3.4373 10 6 5.5660 -1.5224 -4.6278 11 6 6.7913 -0.7042 -4.3116 12 1 6.7433 0.3742 -4.3424 13 6 7.9738 -1.3325 -3.9827 14 7 8.0530 -2.6448 -4.0175 15 14 9.4633 -0.3197 -3.4877 16 1 9.1370 0.4842 -2.2825 17 1 10.6001 -1.2263 -3.1857 18 1 9.8372 0.5879 -4.6020 19 6 4.8975 -1.2984 -5.9856 20 6 5.6878 -2.5821 -5.7247 21 6 4.0782 -1.4040 0.0774 22 6 3.4866 -0.6535 1.2752 23 7 2.0201 -0.6937 1.1985 24 6 1.4139 -0.1357 2.4147 25 6 1.7279 -1.0450 3.6044 26 8 3.1098 -0.9218 3.9465 27 1 -0.3634 0.5128 0.8905 28 1 -0.3633 0.5148 -0.8895 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1308 1.4414 0.0253 31 1 1.6989 1.9488 -0.9025 32 1 1.6575 1.9636 0.8770 33 1 1.7777 -0.1504 -2.1388 34 1 1.5959 -1.7170 -1.3061 35 1 5.0996 -2.6430 -2.8480 36 1 3.6787 -2.1499 -3.7999 37 1 8.8606 -3.0901 -3.7171 38 1 3.8112 -1.3770 -6.0309 39 1 5.3438 -0.5589 -6.6505 40 1 6.6542 -2.6873 -6.2178 41 1 5.1216 -3.5049 -5.5982 42 1 5.1611 -1.2804 0.0663 43 1 3.8284 -2.4626 0.1489 44 1 3.8234 0.3830 1.2575 45 1 3.8156 -1.1275 2.2000 46 1 0.3338 -0.0681 2.2842 47 1 1.8204 0.8585 2.6000 48 1 1.1150 -0.7525 4.4570 49 1 1.5103 -2.0794 3.3385 50 1 3.3978 -1.5261 4.6444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590755566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:08 Heat of formation + Delta-G solvation = -100.663169 kcal Electronic energy + Delta-G solvation = -31302.076192 eV Core-core repulsion = 27263.901097 eV Total energy + Delta-G solvation = -4038.175095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.98107 -38.56160 -37.98669 -37.77981 -36.72842 -35.75124 -34.07408 -33.89003 -30.78136 -29.90559 -28.26738 -28.24330 -27.53682 -26.39541 -23.45926 -22.94247 -22.68857 -21.39245 -20.07682 -19.32562 -18.68776 -18.41424 -18.23801 -17.18604 -16.95078 -16.79584 -16.53949 -16.26776 -15.79208 -15.61730 -15.53421 -15.33013 -14.86564 -14.55478 -14.26181 -14.10623 -13.94565 -13.74932 -13.57395 -13.25252 -13.25044 -13.07291 -12.95542 -12.81273 -12.80529 -12.68996 -12.54789 -12.44176 -12.35179 -12.11340 -12.08152 -12.05215 -11.86422 -11.68142 -11.55980 -11.42286 -11.02983 -10.63747 -10.45984 -10.10554 -9.76177 -9.17827 -8.22149 -6.38845 -0.50481 1.34011 1.38037 1.48540 1.97843 2.39893 2.87281 3.04571 3.09294 3.30125 3.45108 3.52989 3.61497 3.89805 3.98719 4.03066 4.12841 4.23291 4.28153 4.31661 4.44913 4.47128 4.52454 4.57350 4.58521 4.60450 4.66458 4.71499 4.80844 4.82796 4.85108 4.97627 4.98126 5.00908 5.02212 5.05286 5.12893 5.19032 5.22442 5.29452 5.41121 5.42072 5.65205 5.67462 5.72493 6.13073 6.17981 6.22140 6.67625 6.99852 7.36712 8.84024 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.015583 B = 0.003846 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.438984 B = 7278.960470 C = 8172.331618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.093 3.907 3 C -0.179 4.179 4 C 0.124 3.876 5 N -1.005 6.005 6 S 2.625 3.375 7 O -0.997 6.997 8 O -0.984 6.984 9 C -0.555 4.555 10 C 0.003 3.997 11 C -0.542 4.542 12 H 0.043 0.957 13 C 0.056 3.944 14 N -0.888 5.888 15 Si 0.923 3.077 16 H -0.280 1.280 17 H -0.269 1.269 18 H -0.267 1.267 19 C -0.195 4.195 20 C -0.127 4.127 21 C 0.118 3.882 22 C 0.039 3.961 23 N -0.515 5.515 24 C 0.041 3.959 25 C 0.081 3.919 26 O -0.591 6.591 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.266 0.734 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.014 0.986 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.299 -1.557 14.710 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.002 3.998 3 C -0.238 4.238 4 C -0.001 4.001 5 N -0.843 5.843 6 S 2.724 3.276 7 O -0.987 6.987 8 O -0.974 6.974 9 C -0.688 4.688 10 C 0.001 3.999 11 C -0.579 4.579 12 H 0.061 0.939 13 C -0.147 4.147 14 N -0.524 5.524 15 Si 0.748 3.252 16 H -0.205 1.205 17 H -0.193 1.193 18 H -0.192 1.192 19 C -0.232 4.232 20 C -0.166 4.166 21 C -0.008 4.008 22 C -0.090 4.090 23 N -0.239 5.239 24 C -0.086 4.086 25 C 0.003 3.997 26 O -0.401 6.401 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.032 0.968 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -17.948 -0.878 14.092 22.836 hybrid contribution 1.637 0.477 0.384 1.748 sum -16.311 -0.401 14.476 21.812 Atomic orbital electron populations 1.21917 0.90439 1.03863 1.03205 1.21432 0.97021 0.90678 0.90682 1.22453 1.00384 0.98454 1.02537 1.21818 0.77974 1.02084 0.98267 1.57852 1.16851 1.80305 1.29339 1.04316 0.72278 0.77049 0.73979 1.93418 1.71793 1.57258 1.76242 1.93473 1.45847 1.83263 1.74854 1.29922 1.07134 1.19505 1.12208 1.18409 0.94344 1.01608 0.85511 1.20629 0.95109 0.91878 1.50297 0.93905 1.25366 1.00201 0.95754 0.93421 1.70032 1.29258 1.08184 1.44909 0.86152 0.79970 0.79819 0.79289 1.20536 1.19303 1.19186 1.23252 0.98372 1.00785 1.00808 1.22373 0.99394 0.91660 1.03138 1.21673 0.97637 0.98792 0.82650 1.22748 0.88177 0.98538 0.99513 1.62263 1.05952 1.53957 1.01739 1.22484 1.01104 0.96113 0.88922 1.22260 0.82120 0.99617 0.95702 1.86466 1.26802 1.66010 1.60775 0.90640 0.91142 0.90146 0.95204 0.92071 0.91349 0.89402 0.88627 0.86179 0.84835 0.92466 0.88119 0.90337 0.91372 0.89641 0.90743 0.89118 0.96782 0.85689 0.86676 0.95604 0.91365 0.91888 0.75644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.04 71.98 0.58 -1.44 16 2 C 0.09 2.09 0.69 3.61 0.00 2.10 16 3 C -0.18 -4.82 7.68 71.98 0.55 -4.27 16 4 C 0.12 3.23 5.30 86.35 0.46 3.69 16 5 N -1.01 -33.01 2.75 -512.17 -1.41 -34.41 16 6 S 2.62 114.08 4.90 -56.49 -0.28 113.80 16 7 O -1.00 -46.22 16.61 -127.65 -2.12 -48.34 16 8 O -0.98 -51.48 15.28 -127.65 -1.95 -53.43 16 9 C -0.56 -23.35 6.26 71.98 0.45 -22.90 16 10 C 0.00 0.16 1.80 -52.93 -0.10 0.07 16 11 C -0.54 -31.10 6.71 25.60 0.17 -30.93 16 12 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 13 C 0.06 3.22 5.42 84.66 0.46 3.67 16 14 N -0.89 -50.29 12.17 21.45 0.26 -50.03 16 15 Si 0.92 46.28 29.54 68.60 2.03 48.31 16 16 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 17 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.20 -8.50 9.88 30.59 0.30 -8.20 16 20 C -0.13 -5.87 8.94 30.59 0.27 -5.59 16 21 C 0.12 3.55 6.62 86.35 0.57 4.12 16 22 C 0.04 1.05 4.89 86.38 0.42 1.48 16 23 N -0.51 -11.02 4.41 -845.78 -3.73 -14.75 16 24 C 0.04 0.68 4.67 86.30 0.40 1.08 16 25 C 0.08 1.03 7.18 71.98 0.52 1.55 16 26 O -0.59 -9.32 10.63 -148.98 -1.58 -10.91 16 27 H 0.07 0.89 6.09 -2.39 -0.01 0.87 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.03 0.99 5.88 -2.39 -0.01 0.97 16 31 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 1.56 6.92 -2.38 -0.02 1.54 16 33 H 0.09 2.41 6.87 -2.39 -0.02 2.39 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.12 5.08 8.14 -2.39 -0.02 5.06 16 36 H 0.13 4.50 7.98 -2.39 -0.02 4.49 16 37 H 0.27 14.34 8.32 -92.71 -0.77 13.57 16 38 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 39 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.07 3.46 7.85 -2.39 -0.02 3.44 16 41 H 0.09 3.51 8.14 -2.38 -0.02 3.50 16 42 H 0.07 2.58 6.87 -2.39 -0.02 2.57 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.45 6.07 -2.39 -0.01 0.43 16 45 H 0.13 3.05 5.02 -2.39 -0.01 3.04 16 46 H 0.12 1.36 5.58 -2.39 -0.01 1.34 16 47 H 0.03 0.52 7.07 -2.39 -0.02 0.51 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.39 2.81 9.12 -74.06 -0.68 2.13 16 Total: -1.00 -75.27 388.66 -3.45 -78.72 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.27 Total: 26.62 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 5.07 Total: -55.57 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.88 Total: -99.19 kcal Atomic # 8 Polarization: -107.03 SS G_CDS: -5.65 Total: -112.68 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 114.08 SS G_CDS: -0.28 Total: 113.80 kcal Total: -75.27 -3.45 -78.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590755566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.941 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds