Wall clock time and date at job start Wed Apr 1 2020 04:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.70246 * 2 1 4 4 O 1.21276 * 120.00371 * 265.57471 * 3 2 1 5 5 N 1.34773 * 119.99738 * 85.58391 * 3 2 1 6 6 C 1.46502 * 120.00016 * 180.02562 * 5 3 2 7 7 C 1.53047 * 109.45576 * 275.02144 * 6 5 3 8 8 C 1.53188 * 109.30875 * 178.60158 * 7 6 5 9 9 N 1.46926 * 108.76927 * 54.65712 * 8 7 6 10 10 C 1.36937 * 120.63520 * 126.40284 * 9 8 7 11 11 H 1.08000 * 119.99867 * 332.60996 * 10 9 8 12 12 C 1.38809 * 120.00288 * 152.60717 * 10 9 8 13 13 N 1.31617 * 120.00416 * 159.34747 * 12 10 9 14 14 Si 1.86800 * 119.99895 * 339.34814 * 12 10 9 15 15 H 1.48495 * 109.47544 * 92.94273 * 14 12 10 16 16 H 1.48500 * 109.47169 * 212.94334 * 14 12 10 17 17 H 1.48501 * 109.47061 * 332.94183 * 14 12 10 18 18 C 1.46928 * 118.73439 * 306.38130 * 9 8 7 19 19 C 1.53040 * 109.46393 * 154.97050 * 6 5 3 20 20 C 1.53469 * 109.70901 * 239.38092 * 2 1 3 21 21 O 1.43230 * 108.19702 * 180.54675 * 20 2 1 22 22 C 1.36109 * 116.66418 * 46.41866 * 21 20 2 23 23 C 1.38701 * 119.39936 * 162.66296 * 22 21 20 24 24 C 1.38196 * 120.06592 * 179.58537 * 23 22 21 25 25 C 1.38247 * 120.11441 * 0.03675 * 24 23 22 26 26 C 1.38203 * 120.11355 * 0.04529 * 25 24 23 27 27 C 1.38709 * 120.06224 * 359.97438 * 26 25 24 28 28 O 1.36111 * 119.39369 * 179.67231 * 27 26 25 29 29 H 1.08999 * 109.47242 * 299.42342 * 1 2 3 30 30 H 1.09004 * 109.47264 * 59.41634 * 1 2 3 31 31 H 1.08998 * 109.47177 * 179.41960 * 1 2 3 32 32 H 0.97005 * 120.00213 * 359.97438 * 5 3 2 33 33 H 1.09002 * 109.45962 * 34.99157 * 6 5 3 34 34 H 1.09005 * 109.49552 * 298.56293 * 7 6 5 35 35 H 1.08996 * 109.49698 * 58.66153 * 7 6 5 36 36 H 1.09000 * 109.60116 * 294.86320 * 8 7 6 37 37 H 1.09006 * 109.69938 * 174.50489 * 8 7 6 38 38 H 0.96998 * 120.00448 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.58624 * 293.81602 * 18 9 8 40 40 H 1.09001 * 109.70157 * 173.46671 * 18 9 8 41 41 H 1.09010 * 109.49180 * 301.33511 * 19 6 5 42 42 H 1.09003 * 109.49987 * 61.39460 * 19 6 5 43 43 H 1.09000 * 109.70650 * 300.30629 * 20 2 1 44 44 H 1.09005 * 109.70372 * 60.88149 * 20 2 1 45 45 H 1.08003 * 119.96727 * 359.61505 * 23 22 21 46 46 H 1.07994 * 119.94229 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.94715 * 180.02562 * 25 24 23 48 48 H 1.07995 * 119.96913 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0380 1.4188 0.0000 4 8 2.3188 1.9625 -1.0471 5 7 2.1806 2.0835 1.1637 6 6 2.6739 3.4629 1.1638 7 6 4.2043 3.4570 1.1482 8 6 4.7161 4.9004 1.1130 9 7 4.1273 5.6384 2.2388 10 6 4.9243 6.3182 3.1207 11 1 5.9401 5.9935 3.2914 12 6 4.4267 7.4246 3.7953 13 7 5.0020 7.8313 4.9070 14 14 2.9404 8.3364 3.1252 15 1 1.7052 7.7921 3.7442 16 1 3.0598 9.7813 3.4466 17 1 2.8746 8.1608 1.6521 18 6 2.6669 5.6335 2.4000 19 6 2.1780 4.1819 2.4205 20 6 2.0475 -0.7359 -1.2433 21 8 3.4792 -0.7278 -1.2042 22 6 4.0597 -1.0593 -0.0186 23 6 5.3980 -1.4229 0.0061 24 6 6.0035 -1.7538 1.2035 25 6 5.2774 -1.7240 2.3795 26 6 3.9431 -1.3642 2.3617 27 6 3.3292 -1.0314 1.1632 28 8 2.0128 -0.6855 1.1604 29 1 -0.3634 0.5048 0.8951 30 1 -0.3634 0.5229 -0.8847 31 1 -0.3633 -1.0276 -0.0104 32 1 1.9558 1.6488 2.0013 33 1 2.3038 3.9810 0.2790 34 1 4.5753 2.9610 2.0452 35 1 4.5571 2.9244 0.2651 36 1 4.4219 5.3699 0.1743 37 1 5.8027 4.9072 1.2000 38 1 4.6541 8.6042 5.3786 39 1 2.2055 6.1628 1.5663 40 1 2.3989 6.1226 3.3365 41 1 1.0883 4.1652 2.4429 42 1 2.5678 3.6786 3.3053 43 1 1.6840 -1.7635 -1.2402 44 1 1.7013 -0.2263 -2.1426 45 1 5.9675 -1.4471 -0.9112 46 1 7.0458 -2.0362 1.2205 47 1 5.7534 -1.9827 3.3137 48 1 3.3782 -1.3414 3.2818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599375106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:26 Heat of formation + Delta-G solvation = -51.045082 kcal Electronic energy + Delta-G solvation = -32062.193938 eV Core-core repulsion = 27890.726494 eV Total energy + Delta-G solvation = -4171.467444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95913 -39.67301 -38.10126 -37.55156 -37.36823 -34.62946 -33.30753 -32.13380 -30.86227 -30.45981 -30.06784 -29.33522 -27.06771 -25.51053 -24.14517 -23.02529 -22.90136 -22.52177 -21.46546 -20.03978 -19.53390 -19.10144 -18.12217 -17.16718 -16.88304 -16.33906 -15.90896 -15.67436 -15.38174 -15.04002 -14.98207 -14.47316 -14.32709 -14.17314 -14.09403 -13.96913 -13.76809 -13.38656 -13.14180 -13.05377 -12.91172 -12.69902 -12.42602 -12.20818 -12.10843 -12.01287 -11.88945 -11.79807 -11.35549 -11.01667 -10.84013 -10.65011 -10.57387 -10.30177 -10.18321 -9.94673 -9.71016 -9.47564 -8.88389 -8.83885 -8.63951 -8.26986 -7.00141 -5.95674 -3.31532 1.08798 1.12594 2.28998 2.66660 2.88696 3.12597 3.29913 3.48079 3.51363 3.53532 3.79786 4.29189 4.38443 4.40401 4.51956 4.79043 4.81933 4.93896 4.94326 5.06654 5.10088 5.12593 5.16946 5.19664 5.28301 5.31379 5.38309 5.53408 5.63514 5.64561 5.80736 5.94916 5.96965 6.02147 6.05935 6.14165 6.28364 6.29578 6.38045 6.41582 6.55658 6.61165 6.63841 6.64729 6.70451 6.90871 7.15535 7.49134 7.95072 8.11196 8.32297 8.92938 9.71042 10.08599 11.20354 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.003343 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.259503 B = 8373.501224 C = 9294.745255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 C 0.501 3.499 4 O -0.522 6.522 5 N -0.708 5.708 6 C 0.151 3.849 7 C -0.139 4.139 8 C 0.152 3.848 9 N -0.605 5.605 10 C -0.259 4.259 11 H 0.086 0.914 12 C 0.024 3.976 13 N -0.908 5.908 14 Si 0.881 3.119 15 H -0.289 1.289 16 H -0.303 1.303 17 H -0.270 1.270 18 C 0.130 3.870 19 C -0.140 4.140 20 C 0.050 3.950 21 O -0.295 6.295 22 C 0.055 3.945 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.117 4.117 26 C -0.108 4.108 27 C 0.044 3.956 28 O -0.294 6.294 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.066 0.934 38 H 0.263 0.737 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 -22.968 -8.640 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.017 3.983 3 C 0.284 3.716 4 O -0.398 6.398 5 N -0.358 5.358 6 C 0.047 3.953 7 C -0.179 4.179 8 C 0.025 3.975 9 N -0.329 5.329 10 C -0.387 4.387 11 H 0.104 0.896 12 C -0.175 4.175 13 N -0.551 5.551 14 Si 0.711 3.289 15 H -0.216 1.216 16 H -0.231 1.231 17 H -0.195 1.195 18 C 0.004 3.996 19 C -0.180 4.180 20 C -0.026 4.026 21 O -0.209 6.209 22 C 0.010 3.990 23 C -0.134 4.134 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.001 4.001 28 O -0.209 6.209 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.235 0.765 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.379 -22.393 -9.297 25.345 hybrid contribution -1.107 0.428 0.148 1.196 sum -8.486 -21.965 -9.150 25.263 Atomic orbital electron populations 1.21741 0.88280 1.04574 1.04696 1.22855 0.98179 0.89951 0.87323 1.20504 0.78618 0.87657 0.84820 1.90738 1.49289 1.68579 1.31241 1.46207 1.65639 1.15451 1.08533 1.21057 0.94759 0.79859 0.99581 1.22351 0.94341 0.99822 1.01384 1.20889 0.97554 0.89065 0.89969 1.44394 1.00910 1.58729 1.28866 1.18934 0.97569 1.06407 1.15827 0.89630 1.25272 0.97934 0.97305 0.97002 1.69833 1.42788 1.27221 1.15286 0.86980 0.82805 0.78956 0.80130 1.21649 1.23081 1.19507 1.21294 0.85289 0.92869 1.00159 1.22351 0.99488 0.99237 0.96903 1.23500 0.79416 1.00803 0.98887 1.86400 1.20432 1.84514 1.29532 1.19002 0.94088 1.01610 0.84287 1.20462 0.91936 1.01453 0.99571 1.20947 1.00152 1.00301 0.91577 1.20935 0.93105 1.00787 0.98717 1.20453 0.94815 1.01929 0.95433 1.18899 0.84101 1.03418 0.93680 1.86351 1.22044 1.72444 1.40072 0.90141 0.89207 0.89962 0.76456 0.89878 0.91835 0.92414 0.95730 0.91533 0.92761 0.95504 0.90457 0.92248 0.91079 0.89852 0.85269 0.84820 0.85013 0.84950 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.87 37.15 0.33 -0.68 16 2 C 0.06 0.64 1.06 -91.53 -0.10 0.55 16 3 C 0.50 7.18 5.81 -10.98 -0.06 7.12 16 4 O -0.52 -9.21 15.71 5.35 0.08 -9.13 16 5 N -0.71 -10.02 4.99 -53.76 -0.27 -10.29 16 6 C 0.15 2.52 2.42 -67.88 -0.16 2.36 16 7 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 8 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 9 N -0.61 -14.48 2.77 -172.32 -0.48 -14.96 16 10 C -0.26 -7.26 10.04 -15.06 -0.15 -7.41 16 11 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 12 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 13 N -0.91 -27.79 13.97 55.49 0.78 -27.01 16 14 Si 0.88 22.32 24.35 -169.99 -4.14 18.18 16 15 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 16 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 17 H -0.27 -6.78 6.63 56.52 0.37 -6.40 16 18 C 0.13 2.82 4.20 -3.71 -0.02 2.80 16 19 C -0.14 -2.41 5.55 -26.62 -0.15 -2.56 16 20 C 0.05 0.52 5.60 37.40 0.21 0.73 16 21 O -0.29 -3.99 9.97 -36.20 -0.36 -4.35 16 22 C 0.06 0.72 6.31 -39.14 -0.25 0.48 16 23 C -0.12 -1.32 9.96 -39.43 -0.39 -1.72 16 24 C -0.11 -1.09 10.04 -39.59 -0.40 -1.49 16 25 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 26 C -0.11 -1.16 9.96 -39.42 -0.39 -1.56 16 27 C 0.04 0.54 6.17 -39.14 -0.24 0.29 16 28 O -0.29 -3.36 9.14 -32.89 -0.30 -3.66 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.40 5.00 8.05 -40.82 -0.33 4.67 16 33 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 40 H 0.08 1.81 4.50 -51.93 -0.23 1.58 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.13 1.23 7.89 -51.93 -0.41 0.82 16 45 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -33.89 379.56 -8.65 -42.54 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.25 Total: 4.53 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.43 Total: -1.58 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.03 Total: -52.26 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.58 Total: -17.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.89 -8.65 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599375106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.503 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds