Wall clock time and date at job start Wed Apr 1 2020 04:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 C 1.53007 * 109.47029 * 240.00487 * 2 1 3 5 5 C 1.50705 * 109.47088 * 59.99713 * 4 2 1 6 6 H 1.08005 * 119.99814 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99876 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99908 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99996 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46865 * 90.00774 * 9 7 5 11 11 H 1.48503 * 109.47159 * 209.99913 * 9 7 5 12 12 H 1.48499 * 109.47191 * 330.00229 * 9 7 5 13 13 C 1.52989 * 109.47232 * 120.00447 * 2 1 3 14 14 N 1.46496 * 109.47247 * 299.99924 * 13 2 1 15 15 C 1.34780 * 120.00159 * 180.02562 * 14 13 2 16 16 O 1.21276 * 119.99784 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00061 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.44439 * 84.93058 * 17 15 14 19 19 O 1.42937 * 109.44373 * 324.99518 * 17 15 14 20 20 C 1.36005 * 116.97309 * 285.54746 * 19 17 15 21 21 C 1.38442 * 120.45426 * 148.77515 * 20 19 17 22 22 C 1.38292 * 119.91128 * 178.15585 * 21 20 19 23 23 C 1.38279 * 120.23247 * 359.83472 * 22 21 20 24 24 C 1.38269 * 120.17629 * 0.45800 * 23 22 21 25 25 C 1.38523 * 119.87391 * 0.33037 * 24 23 22 26 26 N 1.40155 * 120.64504 * 179.59794 * 25 24 23 27 27 C 1.34952 * 119.23740 * 190.40320 * 26 25 24 28 28 O 1.21294 * 120.14632 * 185.62300 * 27 26 25 29 29 H 1.08994 * 109.46941 * 299.99482 * 1 2 3 30 30 H 1.08996 * 109.47359 * 59.99768 * 1 2 3 31 31 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47141 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47239 * 300.00305 * 3 2 1 34 34 H 1.09004 * 109.46848 * 60.00320 * 3 2 1 35 35 H 1.08994 * 109.46774 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.46745 * 299.99997 * 4 2 1 37 37 H 0.96994 * 120.00143 * 180.02562 * 8 7 5 38 38 H 1.09008 * 109.47099 * 180.02562 * 13 2 1 39 39 H 1.09005 * 109.47390 * 60.00003 * 13 2 1 40 40 H 0.97002 * 119.99920 * 0.02562 * 14 13 2 41 41 H 1.08994 * 109.47178 * 300.06573 * 18 17 15 42 42 H 1.08995 * 109.47119 * 60.06751 * 18 17 15 43 43 H 1.09002 * 109.46948 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.04363 * 358.17705 * 21 20 19 45 45 H 1.07997 * 119.88466 * 179.81281 * 22 21 20 46 46 H 1.08003 * 119.91294 * 180.44165 * 23 22 21 47 47 H 1.07998 * 120.06507 * 180.34603 * 24 23 22 48 48 H 0.97005 * 120.38218 * 10.12942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8677 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 1.4323 0.1384 -4.8058 9 14 2.9442 -2.0006 -3.9036 10 1 2.0856 -3.2115 -3.9486 11 1 3.7357 -1.9083 -5.1567 12 1 3.8650 -2.0895 -2.7419 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4453 15 6 1.8778 -0.4911 3.6694 16 8 2.5751 -1.4771 3.7805 17 6 1.3751 0.2189 4.8999 18 6 -0.0278 -0.2868 5.2423 19 8 1.3262 1.6256 4.6511 20 6 2.5129 2.2897 4.6290 21 6 2.6808 3.3999 3.8191 22 6 3.8794 4.0894 3.8339 23 6 4.9103 3.6761 4.6576 24 6 4.7519 2.5647 5.4648 25 6 3.5596 1.8600 5.4426 26 7 3.3846 0.7263 6.2478 27 6 2.3046 -0.0594 6.0542 28 8 2.0823 -0.9853 6.8056 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7488 -1.2494 37 1 1.6659 -0.1934 -5.6868 38 1 3.1301 -0.7209 1.2493 39 1 1.6767 -1.7490 1.2491 40 1 0.9938 0.7577 2.3564 41 1 -0.6994 -0.0885 4.4071 42 1 0.0090 -1.3595 5.4322 43 1 -0.3920 0.2268 6.1320 44 1 1.8766 3.7271 3.1767 45 1 4.0110 4.9535 3.1996 46 1 5.8417 4.2226 4.6704 47 1 5.5563 2.2467 6.1116 48 1 4.0344 0.5067 6.9337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601582842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:47 Heat of formation + Delta-G solvation = -83.368605 kcal Electronic energy + Delta-G solvation = -31799.739014 eV Core-core repulsion = 27626.869917 eV Total energy + Delta-G solvation = -4172.869098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.24313 -39.74815 -39.13367 -37.89643 -37.25005 -35.51803 -33.79761 -32.71659 -32.04611 -30.61365 -29.31255 -27.91321 -26.68488 -26.60770 -25.57391 -23.77694 -23.20870 -22.73309 -21.36601 -19.71417 -19.56070 -18.56209 -18.05578 -17.51046 -16.86092 -16.60176 -16.20329 -15.84299 -15.58703 -15.14416 -15.04341 -14.65792 -14.43569 -14.25478 -14.00974 -13.78943 -13.60172 -13.48885 -13.24695 -12.79027 -12.71251 -12.68368 -12.49598 -12.35798 -12.26796 -12.09581 -11.57069 -11.29892 -11.18006 -11.15683 -11.04142 -10.66271 -10.57133 -10.52374 -10.11843 -10.02649 -9.78265 -9.53452 -9.04847 -9.01880 -9.01063 -8.56386 -8.29882 -6.07127 -4.04603 0.71470 0.89306 1.83301 2.19086 2.34804 2.79408 3.06865 3.29262 3.37542 3.40525 3.41189 3.59074 4.20291 4.29236 4.40259 4.42989 4.60783 4.87576 4.90944 5.04148 5.21144 5.25121 5.27005 5.30228 5.41110 5.44857 5.57188 5.60400 5.70198 5.78365 6.03114 6.03717 6.07384 6.10460 6.16201 6.24958 6.25090 6.33129 6.42242 6.54764 6.57725 6.82062 6.86148 6.97075 7.00377 7.15054 7.31679 7.39214 7.43027 7.75027 8.00389 8.49458 8.96658 9.55549 11.05528 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.003209 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.733918 B = 8722.638571 C = 9587.190066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 C -0.128 4.128 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.079 0.921 7 C 0.068 3.932 8 N -0.903 5.903 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.124 3.876 14 N -0.698 5.698 15 C 0.498 3.502 16 O -0.524 6.524 17 C 0.090 3.910 18 C -0.129 4.129 19 O -0.289 6.289 20 C 0.069 3.931 21 C -0.097 4.097 22 C -0.110 4.110 23 C -0.106 4.106 24 C -0.126 4.126 25 C 0.098 3.902 26 N -0.657 5.657 27 C 0.522 3.478 28 O -0.488 6.488 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.406 0.594 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 8.572 22.150 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.097 0.903 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.350 5.350 15 C 0.279 3.721 16 O -0.400 6.400 17 C 0.044 3.956 18 C -0.187 4.187 19 O -0.204 6.204 20 C 0.023 3.977 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.147 4.147 25 C 0.002 3.998 26 N -0.303 5.303 27 C 0.307 3.693 28 O -0.360 6.360 29 H 0.050 0.950 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.243 0.757 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.161 0.839 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.509 7.368 22.309 23.628 hybrid contribution 0.898 -0.697 0.025 1.137 sum 3.407 6.672 22.335 23.558 Atomic orbital electron populations 1.21791 0.94637 1.01372 1.00925 1.20702 0.95952 0.96004 0.93615 1.21773 1.00451 0.95465 1.00865 1.19592 0.96286 0.95507 0.92547 1.21059 1.31926 1.13370 0.88549 0.90330 1.24982 0.95658 0.96695 0.95986 1.69893 1.45892 1.40507 0.97894 0.86879 0.81357 0.83980 0.77662 1.20356 1.21477 1.19048 1.21781 0.99079 0.96227 0.82807 1.46054 1.52190 1.31706 1.05054 1.20312 0.81484 0.85412 0.84858 1.90788 1.37100 1.25841 1.86320 1.22436 0.99675 0.80886 0.92557 1.21767 0.89624 1.03234 1.04037 1.86287 1.27200 1.18543 1.88397 1.18595 0.84681 0.96099 0.98303 1.20601 0.98961 0.94683 0.97381 1.21051 0.92254 1.00266 0.99271 1.21015 0.99479 0.96102 0.95883 1.20624 0.95124 0.96918 1.02052 1.18067 0.96042 0.90264 0.95451 1.43596 1.25780 1.24358 1.36580 1.20460 0.81190 0.81784 0.85900 1.90779 1.71761 1.28401 1.45054 0.94956 0.90687 0.93311 0.93398 0.90716 0.94954 0.96375 0.96788 0.92767 0.91584 0.91362 0.75687 0.89370 0.88281 0.89739 0.83937 0.84525 0.84906 0.84926 0.74277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.06 -1.10 0.54 -154.50 -0.08 -1.18 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -13.33 8.20 -34.44 -0.28 -13.62 16 6 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 9 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.12 2.02 4.56 -4.05 -0.02 2.01 16 14 N -0.70 -9.82 4.87 -60.30 -0.29 -10.11 16 15 C 0.50 7.56 6.35 -10.98 -0.07 7.49 16 16 O -0.52 -9.91 16.26 5.56 0.09 -9.82 16 17 C 0.09 1.14 1.03 -92.88 -0.10 1.05 16 18 C -0.13 -1.33 8.39 37.16 0.31 -1.02 16 19 O -0.29 -3.30 9.11 -19.76 -0.18 -3.48 16 20 C 0.07 0.77 6.10 -39.09 -0.24 0.53 16 21 C -0.10 -0.89 9.99 -39.49 -0.39 -1.29 16 22 C -0.11 -0.84 10.04 -39.55 -0.40 -1.24 16 23 C -0.11 -0.78 10.04 -39.55 -0.40 -1.17 16 24 C -0.13 -1.05 9.93 -39.46 -0.39 -1.44 16 25 C 0.10 1.04 6.57 -83.53 -0.55 0.49 16 26 N -0.66 -7.38 5.46 -9.70 -0.05 -7.44 16 27 C 0.52 7.20 6.29 -10.86 -0.07 7.13 16 28 O -0.49 -7.78 16.98 5.55 0.09 -7.68 16 29 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 30 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 34 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.41 5.00 5.60 -40.82 -0.23 4.77 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.09 7.86 -51.93 -0.41 0.68 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 47 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 48 H 0.42 3.70 8.87 -40.82 -0.36 3.34 16 LS Contribution 386.94 15.07 5.83 5.83 Total: -1.00 -33.28 386.94 -7.54 -40.82 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.87 Total: 5.56 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.26 Total: -4.25 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.43 Total: -43.51 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.00 Total: -20.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.28 -7.54 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601582842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.547 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds