Wall clock time and date at job start Wed Apr 1 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47029 * 2 1 4 4 C 1.53007 * 109.47029 * 240.00487 * 2 1 3 5 5 C 1.50705 * 109.47088 * 59.99713 * 4 2 1 6 6 H 1.08005 * 119.99814 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99876 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99908 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99996 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46865 * 90.00774 * 9 7 5 11 11 H 1.48503 * 109.47159 * 209.99913 * 9 7 5 12 12 H 1.48499 * 109.47191 * 330.00229 * 9 7 5 13 13 C 1.52989 * 109.47232 * 120.00447 * 2 1 3 14 14 N 1.46496 * 109.47247 * 299.99924 * 13 2 1 15 15 C 1.34780 * 120.00159 * 180.02562 * 14 13 2 16 16 O 1.21276 * 119.99784 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00061 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.44439 * 84.93058 * 17 15 14 19 19 O 1.42937 * 109.44373 * 324.99518 * 17 15 14 20 20 C 1.36005 * 116.97309 * 285.54746 * 19 17 15 21 21 C 1.38442 * 120.45426 * 148.77515 * 20 19 17 22 22 C 1.38292 * 119.91128 * 178.15585 * 21 20 19 23 23 C 1.38279 * 120.23247 * 359.83472 * 22 21 20 24 24 C 1.38269 * 120.17629 * 0.45800 * 23 22 21 25 25 C 1.38523 * 119.87391 * 0.33037 * 24 23 22 26 26 N 1.40155 * 120.64504 * 179.59794 * 25 24 23 27 27 C 1.34952 * 119.23740 * 190.40320 * 26 25 24 28 28 O 1.21294 * 120.14632 * 185.62300 * 27 26 25 29 29 H 1.08994 * 109.46941 * 299.99482 * 1 2 3 30 30 H 1.08996 * 109.47359 * 59.99768 * 1 2 3 31 31 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47141 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47239 * 300.00305 * 3 2 1 34 34 H 1.09004 * 109.46848 * 60.00320 * 3 2 1 35 35 H 1.08994 * 109.46774 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.46745 * 299.99997 * 4 2 1 37 37 H 0.96994 * 120.00143 * 180.02562 * 8 7 5 38 38 H 1.09008 * 109.47099 * 180.02562 * 13 2 1 39 39 H 1.09005 * 109.47390 * 60.00003 * 13 2 1 40 40 H 0.97002 * 119.99920 * 0.02562 * 14 13 2 41 41 H 1.08994 * 109.47178 * 300.06573 * 18 17 15 42 42 H 1.08995 * 109.47119 * 60.06751 * 18 17 15 43 43 H 1.09002 * 109.46948 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.04363 * 358.17705 * 21 20 19 45 45 H 1.07997 * 119.88466 * 179.81281 * 22 21 20 46 46 H 1.08003 * 119.91294 * 180.44165 * 23 22 21 47 47 H 1.07998 * 120.06507 * 180.34603 * 24 23 22 48 48 H 0.97005 * 120.38218 * 10.12942 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8677 -2.3806 7 6 1.8703 -0.4820 -3.7321 8 7 1.4323 0.1384 -4.8058 9 14 2.9442 -2.0006 -3.9036 10 1 2.0856 -3.2115 -3.9486 11 1 3.7357 -1.9083 -5.1567 12 1 3.8650 -2.0895 -2.7419 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4453 15 6 1.8778 -0.4911 3.6694 16 8 2.5751 -1.4771 3.7805 17 6 1.3751 0.2189 4.8999 18 6 -0.0278 -0.2868 5.2423 19 8 1.3262 1.6256 4.6511 20 6 2.5129 2.2897 4.6290 21 6 2.6808 3.3999 3.8191 22 6 3.8794 4.0894 3.8339 23 6 4.9103 3.6761 4.6576 24 6 4.7519 2.5647 5.4648 25 6 3.5596 1.8600 5.4426 26 7 3.3846 0.7263 6.2478 27 6 2.3046 -0.0594 6.0542 28 8 2.0823 -0.9853 6.8056 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7488 -1.2494 37 1 1.6659 -0.1934 -5.6868 38 1 3.1301 -0.7209 1.2493 39 1 1.6767 -1.7490 1.2491 40 1 0.9938 0.7577 2.3564 41 1 -0.6994 -0.0885 4.4071 42 1 0.0090 -1.3595 5.4322 43 1 -0.3920 0.2268 6.1320 44 1 1.8766 3.7271 3.1767 45 1 4.0110 4.9535 3.1996 46 1 5.8417 4.2226 4.6704 47 1 5.5563 2.2467 6.1116 48 1 4.0344 0.5067 6.9337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601582842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:46 Heat of formation + Delta-G solvation = -106.360489 kcal Electronic energy + Delta-G solvation = -31800.736017 eV Core-core repulsion = 27626.869917 eV Total energy + Delta-G solvation = -4173.866100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15433 -40.83821 -40.10308 -38.90048 -38.51862 -36.35707 -35.31601 -34.11555 -33.42975 -31.29699 -30.02894 -29.75258 -27.97954 -27.95033 -26.55276 -24.84963 -24.27080 -23.80231 -22.62336 -20.83638 -20.40186 -19.69436 -19.03784 -18.89416 -18.57596 -17.49411 -17.28212 -16.88491 -16.47524 -16.36867 -16.09905 -15.83028 -15.65026 -15.40238 -15.26435 -15.04430 -14.86917 -14.36996 -14.27139 -14.19346 -14.17267 -13.85466 -13.53377 -13.42414 -13.30015 -12.94462 -12.83561 -12.76192 -12.61587 -12.30442 -12.23556 -12.17564 -11.94141 -11.78504 -11.55959 -11.52469 -11.35531 -11.01063 -10.89666 -10.69244 -10.28480 -9.71124 -9.06627 -8.21058 -6.20778 -0.04686 0.24080 0.89859 1.05999 1.36010 1.39448 1.47629 1.48373 1.86581 2.04094 2.39672 2.67462 2.73756 3.14664 3.28165 3.44719 3.52454 3.86008 4.01400 4.02330 4.14273 4.25534 4.32462 4.43178 4.48551 4.56372 4.61919 4.66245 4.70169 4.73399 4.89691 4.94931 4.98509 4.99637 5.11003 5.16508 5.20357 5.31190 5.36992 5.40431 5.41986 5.51720 5.55933 5.58043 5.64394 5.69458 5.76958 6.05688 6.26655 6.39406 6.52401 6.84955 6.86300 7.41988 8.94371 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.003209 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.733918 B = 8722.638571 C = 9587.190066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.003 4.003 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.253 1.253 13 C 0.135 3.865 14 N -0.685 5.685 15 C 0.500 3.500 16 O -0.565 6.565 17 C 0.095 3.905 18 C -0.130 4.130 19 O -0.284 6.284 20 C 0.042 3.958 21 C -0.105 4.105 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.126 4.126 25 C 0.071 3.929 26 N -0.649 5.649 27 C 0.512 3.488 28 O -0.522 6.522 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.013 0.987 37 H 0.262 0.738 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.417 0.583 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.155 0.845 45 H 0.162 0.838 46 H 0.162 0.838 47 H 0.154 0.846 48 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 9.793 23.615 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.041 4.041 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.591 5.591 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.177 1.177 13 C 0.012 3.988 14 N -0.337 5.337 15 C 0.283 3.717 16 O -0.444 6.444 17 C 0.050 3.950 18 C -0.187 4.187 19 O -0.199 6.199 20 C -0.004 4.004 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.146 4.146 25 C -0.024 4.024 26 N -0.296 5.296 27 C 0.297 3.703 28 O -0.397 6.397 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.256 0.744 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.173 0.827 45 H 0.179 0.821 46 H 0.180 0.820 47 H 0.172 0.828 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.362 8.645 23.785 25.530 hybrid contribution 0.691 -0.905 -0.416 1.212 sum 4.052 7.740 23.369 24.949 Atomic orbital electron populations 1.21727 0.93685 1.01439 1.01448 1.20561 0.96665 0.96315 0.92195 1.21690 1.00246 0.94598 1.01391 1.19562 0.95936 0.95483 0.93104 1.21346 1.30225 1.12312 0.89897 0.92637 1.25767 0.97361 0.99660 0.95958 1.70026 1.48114 1.42551 0.98414 0.85965 0.79972 0.80662 0.77867 1.19869 1.21526 1.17694 1.21460 0.98467 0.95909 0.82969 1.45841 1.51952 1.31686 1.04207 1.20734 0.80540 0.84823 0.85580 1.90766 1.38950 1.27763 1.86956 1.22320 1.00402 0.81568 0.90755 1.21848 0.88655 1.02669 1.05545 1.86297 1.27654 1.17461 1.88477 1.18954 0.84823 0.97063 0.99562 1.20887 1.00034 0.94220 0.97257 1.21453 0.91609 1.00485 0.99058 1.21436 1.00502 0.95510 0.94724 1.20984 0.94794 0.96725 1.02141 1.18364 0.97218 0.90582 0.96238 1.43545 1.25149 1.24235 1.36679 1.20726 0.81852 0.81657 0.86041 1.90752 1.72753 1.29830 1.46336 0.91354 0.93208 0.93507 0.93658 0.93164 0.91400 0.96752 0.96911 0.92885 0.92466 0.91969 0.74400 0.87410 0.89351 0.88294 0.82716 0.82063 0.82015 0.82822 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.06 -1.93 0.54 -52.18 -0.03 -1.96 16 3 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 5 C -0.50 -26.30 8.20 25.60 0.21 -26.09 16 6 H 0.06 3.13 5.92 -2.91 -0.02 3.11 16 7 C 0.01 0.50 5.47 84.65 0.46 0.97 16 8 N -0.95 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.93 43.69 27.47 68.60 1.88 45.57 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 13 C 0.14 4.23 4.56 86.38 0.39 4.62 16 14 N -0.68 -17.89 4.87 -463.07 -2.25 -20.14 16 15 C 0.50 14.63 6.35 87.66 0.56 15.19 16 16 O -0.56 -21.26 16.26 -3.02 -0.05 -21.31 16 17 C 0.09 2.31 1.03 -12.26 -0.01 2.30 16 18 C -0.13 -2.50 8.39 71.98 0.60 -1.90 16 19 O -0.28 -5.95 9.11 -93.61 -0.85 -6.80 16 20 C 0.04 0.84 6.10 22.59 0.14 0.97 16 21 C -0.11 -1.63 9.99 22.33 0.22 -1.41 16 22 C -0.11 -1.27 10.04 22.29 0.22 -1.05 16 23 C -0.10 -1.14 10.04 22.29 0.22 -0.91 16 24 C -0.13 -1.76 9.93 22.35 0.22 -1.53 16 25 C 0.07 1.39 6.57 38.15 0.25 1.65 16 26 N -0.65 -14.13 5.46 -302.89 -1.66 -15.78 16 27 C 0.51 13.97 6.29 87.66 0.55 14.52 16 28 O -0.52 -16.84 16.98 -3.07 -0.05 -16.89 16 29 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 30 H 0.05 1.83 6.62 -2.39 -0.02 1.82 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 34 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 35 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 36 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.42 9.02 5.60 -92.71 -0.52 8.50 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.91 7.86 -2.39 -0.02 1.89 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 47 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 48 H 0.43 7.32 8.87 -92.70 -0.82 6.50 16 Total: -1.00 -73.90 386.94 2.20 -71.70 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.39 Total: 22.04 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 5.27 Total: -1.29 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -3.61 Total: -93.02 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.95 Total: -45.01 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -73.90 2.20 -71.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601582842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.656 kcal (2) G-P(sol) polarization free energy of solvation -73.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds