Wall clock time and date at job start Wed Apr 1 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35248 * 126.07229 * 2 1 4 4 C 1.40400 * 107.86725 * 180.15445 * 3 2 1 5 5 N 1.40194 * 125.97293 * 179.82137 * 4 3 2 6 6 C 1.34775 * 119.99802 * 359.72185 * 5 4 3 7 7 O 1.21593 * 120.00151 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99585 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72218 * 8 6 5 10 10 C 1.50703 * 109.47138 * 180.28062 * 9 8 6 11 11 N 1.31071 * 126.66306 * 90.02391 * 10 9 8 12 12 N 1.28837 * 107.98847 * 179.97438 * 11 10 9 13 13 N 1.28736 * 109.40107 * 0.02562 * 12 11 10 14 14 N 1.29022 * 108.80639 * 359.74216 * 13 12 11 15 15 C 1.46500 * 126.43697 * 180.24790 * 14 13 12 16 16 C 1.52998 * 117.49788 * 8.79934 * 15 14 13 17 17 C 1.52993 * 60.00448 * 252.51062 * 16 15 14 18 18 N 1.31217 * 108.05352 * 359.56287 * 4 3 2 19 19 N 1.34963 * 126.07026 * 179.67146 * 2 1 3 20 20 C 1.46504 * 125.97615 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.46977 * 270.00042 * 20 19 2 22 22 H 1.07997 * 119.99926 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00129 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99692 * 359.97438 * 23 21 20 25 25 Si 1.86791 * 120.00133 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47142 * 90.00019 * 25 23 21 27 27 H 1.48505 * 109.47294 * 209.99698 * 25 23 21 28 28 H 1.48498 * 109.47397 * 329.99817 * 25 23 21 29 29 H 1.08993 * 109.47139 * 270.33039 * 1 2 3 30 30 H 1.09003 * 109.46877 * 30.32544 * 1 2 3 31 31 H 1.08999 * 109.46981 * 150.32462 * 1 2 3 32 32 H 1.07998 * 126.06487 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99675 * 179.71379 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 35 35 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 36 36 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 37 37 H 1.08996 * 115.54844 * 154.50880 * 15 14 13 38 38 H 1.09003 * 117.50280 * 0.02562 * 16 15 14 39 39 H 1.09002 * 117.49724 * 145.01900 * 16 15 14 40 40 H 1.09003 * 117.50224 * 252.51658 * 17 16 15 41 41 H 1.08997 * 117.51913 * 107.48032 * 17 16 15 42 42 H 1.09003 * 109.47077 * 29.99248 * 20 19 2 43 43 H 1.08996 * 109.47472 * 149.99868 * 20 19 2 44 44 H 0.96999 * 119.99973 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0932 0.0000 4 6 3.6371 0.6545 -0.0036 5 7 4.7738 1.4751 -0.0083 6 6 4.6371 2.8158 -0.0154 7 8 3.5278 3.3138 -0.0182 8 7 5.7299 3.6046 -0.0194 9 6 5.5813 5.0620 -0.0332 10 6 6.9438 5.7058 -0.0421 11 7 7.6492 6.0304 -1.0980 12 7 8.7533 6.5562 -0.6927 13 7 8.7708 6.5750 0.5944 14 7 7.6703 6.0639 1.0329 15 6 7.2853 5.9010 2.4370 16 6 8.1731 6.5606 3.4940 17 6 8.1892 5.0405 3.3222 18 7 3.6337 -0.6576 0.0038 19 7 2.3017 -1.0909 0.0063 20 6 1.8501 -2.4846 0.0148 21 6 1.6957 -2.9539 1.4385 22 1 1.9128 -2.2814 2.2553 23 6 1.2785 -4.2420 1.6984 24 7 1.0147 -5.0610 0.7038 25 14 1.0879 -4.8240 3.4631 26 1 -0.2947 -4.5471 3.9291 27 1 1.3511 -6.2838 3.5341 28 1 2.0557 -4.1038 4.3291 29 1 -0.3633 0.0059 1.0276 30 1 -0.3633 0.8871 -0.5189 31 1 -0.3633 -0.8929 -0.5088 32 1 1.9721 2.1211 -0.0004 33 1 5.6587 1.0777 -0.0064 34 1 6.6148 3.2074 -0.0176 35 1 5.0315 5.3627 -0.9252 36 1 5.0349 5.3800 0.8547 37 1 6.2130 5.8675 2.6295 38 1 9.0435 7.1162 3.1449 39 1 7.6849 6.9616 4.3823 40 1 7.7115 4.4412 4.0973 41 1 9.0701 4.5953 2.8597 42 1 0.8911 -2.5589 -0.4982 43 1 2.5844 -3.1076 -0.4956 44 1 0.7208 -5.9672 0.8865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611481960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:05 Heat of formation + Delta-G solvation = 206.931142 kcal Electronic energy + Delta-G solvation = -28948.213729 eV Core-core repulsion = 24748.978132 eV Total energy + Delta-G solvation = -4199.235597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.71442 -40.87115 -39.76991 -38.52628 -35.93998 -34.83734 -34.20407 -33.46384 -32.74054 -31.42275 -30.81390 -27.99891 -26.55348 -26.32544 -25.75516 -23.63542 -23.24226 -22.92633 -21.94602 -21.57893 -20.12508 -19.71855 -18.53251 -17.93777 -17.60479 -16.72432 -16.54736 -16.02091 -15.82997 -15.69330 -15.25582 -14.88831 -14.60633 -14.32278 -14.24882 -14.01288 -13.73673 -13.17622 -13.04141 -12.82342 -12.51987 -12.50360 -12.37534 -12.32099 -12.21282 -11.72022 -11.71820 -11.43012 -11.42829 -11.15164 -11.01308 -10.85978 -10.59288 -10.51339 -10.29505 -10.12476 -9.75505 -9.66383 -9.52017 -8.66801 -7.97376 -7.47111 -6.27897 -4.35515 0.54004 1.26757 1.63797 2.28512 2.54669 2.76664 2.98257 3.18649 3.22606 3.25390 3.30025 3.50605 3.52228 3.72999 3.79916 3.93611 3.98590 4.14991 4.29209 4.60119 4.78685 4.86690 4.96222 5.01914 5.05879 5.12336 5.22598 5.27257 5.36589 5.62348 5.65596 5.79106 5.91999 6.08659 6.12592 6.41598 6.43756 6.55468 6.88072 6.98830 7.04809 7.43514 7.64474 7.77524 7.86588 8.02687 8.09874 8.38337 8.62295 8.72438 9.30723 10.79396 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.002008 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.936799 B =13940.658439 C =14804.758318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.280 3.720 5 N -0.640 5.640 6 C 0.720 3.280 7 O -0.560 6.560 8 N -0.743 5.743 9 C 0.230 3.770 10 C 0.168 3.832 11 N -0.280 5.280 12 N -0.073 5.073 13 N -0.089 5.089 14 N -0.267 5.267 15 C 0.041 3.959 16 C -0.153 4.153 17 C -0.159 4.159 18 N -0.322 5.322 19 N -0.317 5.317 20 C 0.258 3.742 21 C -0.535 4.535 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.400 0.600 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.165 0.835 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.215 21.732 4.402 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.027 3.973 5 N -0.289 5.289 6 C 0.419 3.581 7 O -0.435 6.435 8 N -0.402 5.402 9 C 0.103 3.897 10 C -0.110 4.110 11 N -0.130 5.130 12 N -0.067 5.067 13 N -0.074 5.074 14 N -0.069 5.069 15 C -0.062 4.062 16 C -0.190 4.190 17 C -0.198 4.198 18 N -0.152 5.152 19 N -0.099 5.099 20 C 0.141 3.859 21 C -0.574 4.574 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.234 0.766 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.182 0.818 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.954 21.386 3.662 24.306 hybrid contribution -0.217 -0.512 1.470 1.572 sum 10.737 20.874 5.132 24.028 Atomic orbital electron populations 1.20334 0.87874 1.02865 1.03155 1.21072 0.94924 0.87140 1.00843 1.21214 0.89585 0.99828 1.21344 1.18623 0.86373 0.89268 1.03069 1.41289 1.07842 1.03466 1.76306 1.15401 0.84130 0.80500 0.78045 1.90909 1.23134 1.73406 1.56024 1.44834 1.08440 1.05002 1.81945 1.19373 0.85853 0.78438 1.06068 1.25955 0.99294 1.03088 0.82655 1.75126 1.00566 1.13472 1.23875 1.78722 1.13029 1.14466 1.00450 1.78882 1.04983 1.15422 1.08155 1.47971 1.11795 1.38005 1.09100 1.22530 0.99515 1.11212 0.72927 1.23474 1.01375 0.96108 0.98064 1.23573 1.01025 0.94593 1.00570 1.77262 1.00022 1.08274 1.29674 1.48981 1.00842 1.07806 1.52285 1.19693 0.95990 0.71319 0.98925 1.21308 1.46795 0.97942 0.91336 0.91780 1.24931 0.94716 0.96056 0.98129 1.69918 1.44861 1.06987 1.31165 0.86355 0.78648 0.77903 0.83768 1.20290 1.20886 1.19746 0.90433 0.90781 0.90866 0.82171 0.75796 0.76593 0.86819 0.88482 0.81806 0.86474 0.86092 0.85862 0.87333 0.92756 0.93011 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.11 36.01 0.36 -1.02 16 2 C 0.09 1.86 6.93 -82.28 -0.57 1.29 16 3 C -0.29 -5.65 9.52 -39.83 -0.38 -6.03 16 4 C 0.28 5.40 8.11 -154.36 -1.25 4.15 16 5 N -0.64 -9.08 5.46 -15.50 -0.08 -9.16 16 6 C 0.72 9.19 8.53 -86.92 -0.74 8.45 16 7 O -0.56 -8.87 13.47 5.28 0.07 -8.80 16 8 N -0.74 -6.21 5.55 -66.41 -0.37 -6.58 16 9 C 0.23 1.66 6.01 -5.19 -0.03 1.62 16 10 C 0.17 1.40 7.50 -155.43 -1.17 0.24 16 11 N -0.28 -3.19 12.36 32.70 0.40 -2.78 16 12 N -0.07 -0.89 13.43 60.35 0.81 -0.08 16 13 N -0.09 -0.90 12.69 60.35 0.77 -0.13 16 14 N -0.27 -2.00 3.67 -51.81 -0.19 -2.19 16 15 C 0.04 0.17 6.63 -67.93 -0.45 -0.28 16 16 C -0.15 -0.45 10.15 -26.74 -0.27 -0.72 16 17 C -0.16 -0.52 10.46 -26.73 -0.28 -0.80 16 18 N -0.32 -7.17 12.59 31.44 0.40 -6.78 16 19 N -0.32 -7.31 3.59 -58.32 -0.21 -7.52 16 20 C 0.26 6.49 5.99 -5.19 -0.03 6.46 16 21 C -0.54 -14.45 9.39 -34.44 -0.32 -14.77 16 22 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 25 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 32 H 0.16 3.03 5.91 -52.49 -0.31 2.72 16 33 H 0.41 4.60 8.84 -40.82 -0.36 4.24 16 34 H 0.40 2.68 8.48 -40.82 -0.35 2.33 16 35 H 0.11 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.10 0.53 7.34 -51.93 -0.38 0.15 16 37 H 0.16 0.33 7.41 -51.93 -0.38 -0.05 16 38 H 0.12 0.49 7.85 -51.93 -0.41 0.08 16 39 H 0.12 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 43 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -34.62 384.79 -7.55 -42.17 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.43 Total: 4.10 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -5.23 Total: 0.24 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 2.26 Total: -59.19 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.62 -7.55 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611481960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.100 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 206.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds