Wall clock time and date at job start Wed Apr 1 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47207 * 2 1 4 4 C 1.46894 * 111.00149 * 300.00515 * 3 2 1 5 5 C 1.50707 * 109.46958 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00147 * 354.63743 * 5 4 3 7 7 N 1.34772 * 119.99725 * 174.64055 * 5 4 3 8 8 C 1.46503 * 120.00074 * 184.48936 * 7 5 4 9 9 C 1.50699 * 109.47272 * 269.99742 * 8 7 5 10 10 H 1.08003 * 119.99621 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00247 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99735 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99709 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47322 * 89.99692 * 13 11 9 15 15 H 1.48507 * 109.46772 * 209.99332 * 13 11 9 16 16 H 1.48497 * 109.47277 * 329.99755 * 13 11 9 17 17 C 1.39928 * 120.00496 * 4.48459 * 7 5 4 18 18 C 1.38872 * 120.06597 * 66.94612 * 17 7 5 19 19 C 1.38114 * 119.92929 * 179.97438 * 18 17 7 20 20 C 1.38283 * 120.06883 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.14159 * 0.03316 * 20 19 18 22 22 C 1.38105 * 120.06938 * 359.96593 * 21 20 19 23 23 C 1.50705 * 109.47404 * 240.00327 * 2 1 3 24 24 O 1.20826 * 119.99749 * 335.00264 * 23 2 1 25 25 O 1.34226 * 120.00128 * 154.99740 * 23 2 1 26 26 C 1.52998 * 109.47320 * 120.00103 * 2 1 3 27 27 C 1.53001 * 117.49720 * 123.74739 * 26 2 1 28 28 C 1.53002 * 117.49793 * 55.08967 * 26 2 1 29 29 H 1.08998 * 109.47339 * 59.99677 * 1 2 3 30 30 H 1.09003 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46844 * 299.99783 * 1 2 3 32 32 H 1.00902 * 110.99480 * 63.95921 * 3 2 1 33 33 H 1.08998 * 109.47315 * 59.99647 * 4 3 2 34 34 H 1.08998 * 109.46952 * 299.99243 * 4 3 2 35 35 H 1.09004 * 109.46985 * 29.99615 * 8 7 5 36 36 H 1.09003 * 109.47373 * 149.99929 * 8 7 5 37 37 H 0.97001 * 119.99582 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.03932 * 359.71096 * 18 17 7 39 39 H 1.07998 * 119.96480 * 179.97438 * 19 18 17 40 40 H 1.07999 * 119.92669 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.96378 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.03423 * 179.97438 * 22 21 20 43 43 H 0.96701 * 116.99635 * 180.02562 * 25 23 2 44 44 H 1.08998 * 115.55103 * 269.41694 * 26 2 1 45 45 H 1.08996 * 117.50052 * 0.02562 * 27 26 2 46 46 H 1.09003 * 117.49760 * 145.02383 * 27 26 2 47 47 H 1.08998 * 117.50129 * 214.97764 * 28 26 2 48 48 H 1.09003 * 117.49974 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1100 -1.1876 5 6 2.0692 3.5238 -1.1524 6 8 2.6820 3.9204 -0.1838 7 7 1.8539 4.3474 -2.1972 8 6 2.4431 5.6886 -2.2063 9 6 1.4869 6.6618 -1.5662 10 1 0.5356 6.3156 -1.1899 11 6 1.8269 7.9937 -1.4601 12 7 0.9922 8.8430 -0.9019 13 14 3.4726 8.5922 -2.1104 14 1 3.3252 8.9991 -3.5310 15 1 3.9290 9.7550 -1.3073 16 1 4.4719 7.4983 -2.0101 17 6 1.0675 3.9214 -3.2734 18 6 -0.2909 3.6942 -3.0956 19 6 -1.0645 3.2744 -4.1600 20 6 -0.4878 3.0808 -5.4018 21 6 0.8646 3.3060 -5.5821 22 6 1.6436 3.7260 -4.5218 23 6 2.0324 -0.7103 -1.2305 24 8 1.3396 -1.5361 -1.7765 25 8 3.2493 -0.4256 -1.7200 26 6 2.0400 -0.7213 1.2492 27 6 2.9863 -1.9059 1.0440 28 6 1.5432 -2.1476 1.4937 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7502 1.8637 0.8464 33 1 0.4587 2.1246 -1.1958 34 1 1.9121 1.6109 -2.0858 35 1 3.3790 5.6781 -1.6476 36 1 2.6372 5.9933 -3.2347 37 1 1.2313 9.7801 -0.8276 38 1 -0.7412 3.8415 -2.1251 39 1 -2.1208 3.0971 -4.0222 40 1 -1.0949 2.7528 -6.2326 41 1 1.3121 3.1535 -6.5531 42 1 2.6999 3.9013 -4.6632 43 1 3.5278 -0.9067 -2.5112 44 1 2.2061 -0.0896 2.1218 45 1 3.2458 -2.1711 0.0192 46 1 3.7748 -2.0538 1.7820 47 1 1.3829 -2.4545 2.5273 48 1 0.8527 -2.5719 0.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827728001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:14 Heat of formation + Delta-G solvation = -49.369051 kcal Electronic energy + Delta-G solvation = -31565.703136 eV Core-core repulsion = 27394.308370 eV Total energy + Delta-G solvation = -4171.394766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18301 -39.98989 -38.34424 -37.87603 -36.22561 -35.60423 -34.84593 -32.64009 -30.85773 -30.42278 -29.62057 -28.10741 -26.56733 -25.00556 -23.22565 -22.60561 -22.49922 -22.33381 -21.68143 -19.84972 -19.12101 -18.22257 -17.65422 -16.96684 -16.69189 -16.57862 -15.95799 -15.61486 -15.42560 -15.07838 -14.90017 -14.57079 -14.16777 -14.10701 -14.01565 -13.53025 -13.35911 -13.22978 -13.07751 -12.69045 -12.52224 -12.41947 -12.33293 -11.95465 -11.85833 -11.77091 -11.70859 -11.51130 -11.38272 -11.11148 -10.89491 -10.70998 -10.65830 -10.59191 -10.40623 -10.21043 -9.60341 -9.45847 -8.80787 -8.72962 -8.61624 -8.52243 -7.74939 -6.11351 -4.10330 1.47233 1.56230 1.98658 2.81481 3.15453 3.22207 3.26333 3.34460 3.36933 3.54625 3.92409 4.02520 4.28767 4.37286 4.48493 4.71710 4.78539 4.91409 4.97896 5.04110 5.08882 5.11020 5.21948 5.24654 5.28381 5.33296 5.39306 5.44760 5.50272 5.59780 5.60844 5.73422 5.79941 5.83157 5.89385 5.93363 6.17370 6.31915 6.46226 6.58558 6.62068 6.65733 6.70803 6.89948 7.01226 7.14631 7.28235 7.55088 7.77808 8.13978 8.41478 8.79347 8.91126 9.47891 11.01942 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.003665 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.263642 B = 7638.043917 C = 8961.543737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.157 3.843 3 N -0.646 5.646 4 C 0.035 3.965 5 C 0.520 3.480 6 O -0.509 6.509 7 N -0.557 5.557 8 C 0.220 3.780 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.075 3.925 12 N -0.896 5.896 13 Si 0.872 3.128 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.160 3.840 18 C -0.122 4.122 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.110 4.110 22 C -0.127 4.127 23 C 0.497 3.503 24 O -0.518 6.518 25 O -0.492 6.492 26 C -0.137 4.137 27 C -0.173 4.173 28 C -0.176 4.176 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.364 0.636 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.402 0.598 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -21.334 -3.281 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.064 3.936 3 N -0.282 5.282 4 C -0.097 4.097 5 C 0.306 3.694 6 O -0.383 6.383 7 N -0.285 5.285 8 C 0.101 3.899 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.128 4.128 12 N -0.534 5.534 13 Si 0.699 3.301 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.188 1.188 17 C 0.068 3.932 18 C -0.142 4.142 19 C -0.127 4.127 20 C -0.150 4.150 21 C -0.128 4.128 22 C -0.147 4.147 23 C 0.339 3.661 24 O -0.406 6.406 25 O -0.302 6.302 26 C -0.155 4.155 27 C -0.210 4.210 28 C -0.213 4.213 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.187 0.813 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.260 0.740 44 H 0.145 0.855 45 H 0.108 0.892 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.002 -21.038 -2.722 21.213 hybrid contribution -0.045 0.515 -0.766 0.924 sum -0.047 -20.523 -3.488 20.817 Atomic orbital electron populations 1.22478 0.93258 1.04420 1.03371 1.20305 0.93668 0.89980 0.89680 1.60242 1.62643 0.99560 1.05722 1.22002 0.99043 0.93497 0.95166 1.20054 0.80603 0.86113 0.82584 1.90699 1.40066 1.76323 1.31233 1.45587 1.49620 1.16207 1.17119 1.19797 0.95371 0.77504 0.97258 1.21231 1.04078 0.91900 1.39362 0.90709 1.24811 0.96808 0.96491 0.94681 1.69885 1.35992 1.03578 1.43924 0.86898 0.84856 0.79152 0.79195 1.20048 1.20814 1.18771 1.17721 0.90173 0.96916 0.88384 1.21378 0.92618 1.00258 0.99921 1.20999 0.99550 0.99424 0.92721 1.21085 0.95137 1.01633 0.97193 1.20966 0.93977 0.99606 0.98270 1.21295 1.00332 1.00496 0.92578 1.23176 0.78857 0.79800 0.84251 1.90719 1.57479 1.33264 1.59160 1.84750 1.34254 1.64903 1.46276 1.22086 1.04841 0.90819 0.97797 1.23070 0.93688 1.01579 1.02677 1.23137 0.97529 0.97601 1.03035 0.91421 0.90311 0.90403 0.81348 0.91661 0.88708 0.93680 0.95426 0.92511 0.85854 0.85982 0.86268 0.86025 0.85809 0.74013 0.85526 0.89199 0.87921 0.87980 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 7.55 37.15 0.28 -1.53 16 2 C 0.16 1.78 0.79 -132.75 -0.10 1.67 16 3 N -0.65 -8.87 5.52 -102.40 -0.57 -9.43 16 4 C 0.03 0.53 4.10 -4.98 -0.02 0.51 16 5 C 0.52 10.42 7.59 -10.98 -0.08 10.33 16 6 O -0.51 -12.06 15.78 5.56 0.09 -11.97 16 7 N -0.56 -11.53 2.51 -114.73 -0.29 -11.82 16 8 C 0.22 5.36 4.14 -5.19 -0.02 5.34 16 9 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 10 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 11 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 13 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 17 C 0.16 2.81 4.42 -83.69 -0.37 2.44 16 18 C -0.12 -1.94 8.46 -39.39 -0.33 -2.28 16 19 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 20 C -0.13 -1.60 10.04 -39.55 -0.40 -1.99 16 21 C -0.11 -1.39 10.04 -39.61 -0.40 -1.78 16 22 C -0.13 -1.94 9.65 -39.40 -0.38 -2.32 16 23 C 0.50 6.05 3.66 36.01 0.13 6.18 16 24 O -0.52 -7.10 16.85 -18.75 -0.32 -7.41 16 25 O -0.49 -5.46 12.14 -39.25 -0.48 -5.94 16 26 C -0.14 -1.33 5.44 -90.62 -0.49 -1.82 16 27 C -0.17 -1.59 9.68 -26.69 -0.26 -1.85 16 28 C -0.18 -1.46 9.56 -26.69 -0.26 -1.72 16 29 H 0.07 0.74 6.40 -51.93 -0.33 0.41 16 30 H 0.08 0.77 6.72 -51.93 -0.35 0.42 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.36 4.99 8.34 -39.29 -0.33 4.67 16 33 H 0.07 0.91 5.16 -51.93 -0.27 0.64 16 34 H 0.09 1.40 6.52 -51.93 -0.34 1.06 16 35 H 0.05 1.17 6.55 -51.93 -0.34 0.83 16 36 H 0.03 0.65 7.26 -51.93 -0.38 0.27 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.12 2.00 7.91 -52.49 -0.42 1.58 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.40 2.67 9.10 45.56 0.41 3.08 16 44 H 0.13 1.15 8.13 -51.93 -0.42 0.73 16 45 H 0.09 0.90 6.18 -51.93 -0.32 0.58 16 46 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 0.90 7.29 -51.93 -0.38 0.52 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -35.38 394.14 -9.06 -44.44 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.00 Total: 10.09 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.54 Total: -3.96 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.08 Total: -47.94 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.70 Total: -25.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.38 -9.06 -44.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.932 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds