Wall clock time and date at job start Wed Apr 1 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46903 * 109.47207 * 2 1 4 4 C 1.46894 * 111.00149 * 300.00515 * 3 2 1 5 5 C 1.50707 * 109.46958 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00147 * 354.63743 * 5 4 3 7 7 N 1.34772 * 119.99725 * 174.64055 * 5 4 3 8 8 C 1.46503 * 120.00074 * 184.48936 * 7 5 4 9 9 C 1.50699 * 109.47272 * 269.99742 * 8 7 5 10 10 H 1.08003 * 119.99621 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00247 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99735 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 119.99709 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47322 * 89.99692 * 13 11 9 15 15 H 1.48507 * 109.46772 * 209.99332 * 13 11 9 16 16 H 1.48497 * 109.47277 * 329.99755 * 13 11 9 17 17 C 1.39928 * 120.00496 * 4.48459 * 7 5 4 18 18 C 1.38872 * 120.06597 * 66.94612 * 17 7 5 19 19 C 1.38114 * 119.92929 * 179.97438 * 18 17 7 20 20 C 1.38283 * 120.06883 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.14159 * 0.03316 * 20 19 18 22 22 C 1.38105 * 120.06938 * 359.96593 * 21 20 19 23 23 C 1.50705 * 109.47404 * 240.00327 * 2 1 3 24 24 O 1.20826 * 119.99749 * 335.00264 * 23 2 1 25 25 O 1.34226 * 120.00128 * 154.99740 * 23 2 1 26 26 C 1.52998 * 109.47320 * 120.00103 * 2 1 3 27 27 C 1.53001 * 117.49720 * 123.74739 * 26 2 1 28 28 C 1.53002 * 117.49793 * 55.08967 * 26 2 1 29 29 H 1.08998 * 109.47339 * 59.99677 * 1 2 3 30 30 H 1.09003 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46844 * 299.99783 * 1 2 3 32 32 H 1.00902 * 110.99480 * 63.95921 * 3 2 1 33 33 H 1.08998 * 109.47315 * 59.99647 * 4 3 2 34 34 H 1.08998 * 109.46952 * 299.99243 * 4 3 2 35 35 H 1.09004 * 109.46985 * 29.99615 * 8 7 5 36 36 H 1.09003 * 109.47373 * 149.99929 * 8 7 5 37 37 H 0.97001 * 119.99582 * 180.02562 * 12 11 9 38 38 H 1.07997 * 120.03932 * 359.71096 * 18 17 7 39 39 H 1.07998 * 119.96480 * 179.97438 * 19 18 17 40 40 H 1.07999 * 119.92669 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.96378 * 179.97438 * 21 20 19 42 42 H 1.08005 * 120.03423 * 179.97438 * 22 21 20 43 43 H 0.96701 * 116.99635 * 180.02562 * 25 23 2 44 44 H 1.08998 * 115.55103 * 269.41694 * 26 2 1 45 45 H 1.08996 * 117.50052 * 0.02562 * 27 26 2 46 46 H 1.09003 * 117.49760 * 145.02383 * 27 26 2 47 47 H 1.08998 * 117.50129 * 214.97764 * 28 26 2 48 48 H 1.09003 * 117.49974 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5486 2.1100 -1.1876 5 6 2.0692 3.5238 -1.1524 6 8 2.6820 3.9204 -0.1838 7 7 1.8539 4.3474 -2.1972 8 6 2.4431 5.6886 -2.2063 9 6 1.4869 6.6618 -1.5662 10 1 0.5356 6.3156 -1.1899 11 6 1.8269 7.9937 -1.4601 12 7 0.9922 8.8430 -0.9019 13 14 3.4726 8.5922 -2.1104 14 1 3.3252 8.9991 -3.5310 15 1 3.9290 9.7550 -1.3073 16 1 4.4719 7.4983 -2.0101 17 6 1.0675 3.9214 -3.2734 18 6 -0.2909 3.6942 -3.0956 19 6 -1.0645 3.2744 -4.1600 20 6 -0.4878 3.0808 -5.4018 21 6 0.8646 3.3060 -5.5821 22 6 1.6436 3.7260 -4.5218 23 6 2.0324 -0.7103 -1.2305 24 8 1.3396 -1.5361 -1.7765 25 8 3.2493 -0.4256 -1.7200 26 6 2.0400 -0.7213 1.2492 27 6 2.9863 -1.9059 1.0440 28 6 1.5432 -2.1476 1.4937 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7502 1.8637 0.8464 33 1 0.4587 2.1246 -1.1958 34 1 1.9121 1.6109 -2.0858 35 1 3.3790 5.6781 -1.6476 36 1 2.6372 5.9933 -3.2347 37 1 1.2313 9.7801 -0.8276 38 1 -0.7412 3.8415 -2.1251 39 1 -2.1208 3.0971 -4.0222 40 1 -1.0949 2.7528 -6.2326 41 1 1.3121 3.1535 -6.5531 42 1 2.6999 3.9013 -4.6632 43 1 3.5278 -0.9067 -2.5112 44 1 2.2061 -0.0896 2.1218 45 1 3.2458 -2.1711 0.0192 46 1 3.7748 -2.0538 1.7820 47 1 1.3829 -2.4545 2.5273 48 1 0.8527 -2.5719 0.7649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827728001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:12 Heat of formation + Delta-G solvation = -73.634086 kcal Electronic energy + Delta-G solvation = -31566.755347 eV Core-core repulsion = 27394.308370 eV Total energy + Delta-G solvation = -4172.446977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15202 -41.36901 -39.58093 -38.81372 -37.17218 -36.76906 -36.25094 -34.75671 -32.03065 -31.63010 -30.97296 -29.62244 -27.80892 -26.09503 -24.57214 -23.94258 -23.44414 -23.19283 -23.02823 -20.75875 -20.49009 -19.27792 -19.12938 -18.74635 -17.86231 -17.62710 -17.07545 -17.05539 -16.84011 -16.31849 -15.86693 -15.81752 -15.63640 -15.21968 -15.00413 -14.78551 -14.66903 -14.39105 -14.31754 -14.21040 -13.80419 -13.72309 -13.53368 -13.33855 -13.13690 -12.92861 -12.66529 -12.59068 -12.54941 -12.42801 -12.29762 -12.17374 -11.98661 -11.77535 -11.59886 -11.39779 -11.17837 -11.01521 -10.84234 -10.14209 -9.89003 -9.67343 -9.22091 -8.35898 -6.41106 0.31827 0.46861 1.04256 1.30130 1.34084 1.44591 1.60758 1.91878 2.00767 2.29091 2.61540 2.82366 2.98026 3.00875 3.46189 3.47743 3.71359 3.95615 4.00731 4.08985 4.09301 4.11133 4.15205 4.22269 4.25285 4.29021 4.53898 4.56687 4.57873 4.63374 4.66901 4.72572 4.79726 4.85384 4.93458 5.05490 5.06121 5.11536 5.18502 5.36639 5.38082 5.45758 5.50778 5.59621 5.61057 5.69251 6.01390 6.05509 6.19270 6.58253 6.61017 6.95105 7.15383 7.27789 8.80990 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.003665 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.263642 B = 7638.043917 C = 8961.543737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.156 3.844 3 N -0.655 5.655 4 C 0.057 3.943 5 C 0.511 3.489 6 O -0.558 6.558 7 N -0.560 5.560 8 C 0.230 3.770 9 C -0.534 4.534 10 H 0.029 0.971 11 C 0.015 3.985 12 N -0.942 5.942 13 Si 0.944 3.056 14 H -0.254 1.254 15 H -0.279 1.279 16 H -0.254 1.254 17 C 0.122 3.878 18 C -0.140 4.140 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.137 4.137 23 C 0.500 3.500 24 O -0.536 6.536 25 O -0.499 6.499 26 C -0.149 4.149 27 C -0.178 4.178 28 C -0.159 4.159 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.362 0.638 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.269 0.731 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.420 0.580 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -23.109 -5.604 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.063 3.937 3 N -0.290 5.290 4 C -0.075 4.075 5 C 0.300 3.700 6 O -0.435 6.435 7 N -0.288 5.288 8 C 0.109 3.891 9 C -0.572 4.572 10 H 0.047 0.953 11 C -0.183 4.183 12 N -0.582 5.582 13 Si 0.766 3.234 14 H -0.178 1.178 15 H -0.204 1.204 16 H -0.177 1.177 17 C 0.032 3.968 18 C -0.159 4.159 19 C -0.125 4.125 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.156 4.156 23 C 0.342 3.658 24 O -0.425 6.425 25 O -0.311 6.311 26 C -0.167 4.167 27 C -0.215 4.215 28 C -0.197 4.197 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.184 0.816 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.166 0.834 40 H 0.176 0.824 41 H 0.175 0.825 42 H 0.145 0.855 43 H 0.281 0.719 44 H 0.150 0.850 45 H 0.098 0.902 46 H 0.133 0.867 47 H 0.141 0.859 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.227 -22.860 -5.094 23.421 hybrid contribution -0.230 0.996 -0.093 1.027 sum -0.003 -21.864 -5.187 22.470 Atomic orbital electron populations 1.22468 0.92442 1.04850 1.03507 1.20425 0.94349 0.88460 0.90428 1.60221 1.63189 1.00582 1.04997 1.21767 0.99285 0.90309 0.96106 1.20929 0.79634 0.87770 0.81624 1.90656 1.42333 1.77584 1.32941 1.45501 1.49822 1.14926 1.18529 1.19412 0.93668 0.78934 0.97039 1.21421 1.03171 0.93205 1.39411 0.95302 1.25784 1.01120 0.96555 0.94859 1.70038 1.38444 1.04147 1.45600 0.85772 0.79515 0.78653 0.79462 1.17785 1.20388 1.17744 1.17991 0.90621 0.99769 0.88439 1.21380 0.92465 1.01676 1.00398 1.21330 1.00601 0.98255 0.92346 1.21573 0.95288 0.99375 0.97571 1.21380 0.94131 0.97746 0.98776 1.21441 1.00957 1.00945 0.92265 1.23257 0.78875 0.79448 0.84184 1.90706 1.57987 1.34115 1.59709 1.84716 1.33796 1.65242 1.47353 1.22113 1.05979 0.91438 0.97197 1.23133 0.94615 1.01213 1.02562 1.23182 0.96601 0.95858 1.04015 0.92280 0.89646 0.89308 0.81584 0.90571 0.88055 0.95382 0.93838 0.92196 0.87612 0.83421 0.82414 0.82524 0.85544 0.71923 0.85028 0.90206 0.86702 0.85911 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 7.55 71.98 0.54 -2.91 16 2 C 0.16 3.46 0.79 2.78 0.00 3.46 16 3 N -0.65 -18.24 5.52 -477.88 -2.64 -20.88 16 4 C 0.06 1.77 4.10 85.56 0.35 2.12 16 5 C 0.51 21.45 7.59 87.66 0.67 22.11 16 6 O -0.56 -27.86 15.78 -3.03 -0.05 -27.91 16 7 N -0.56 -24.06 2.51 -635.29 -1.59 -25.65 16 8 C 0.23 11.57 4.14 85.63 0.35 11.92 16 9 C -0.53 -31.90 9.94 25.60 0.25 -31.65 16 10 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 11 C 0.02 0.90 5.47 84.65 0.46 1.36 16 12 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 13 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 14 H -0.25 -11.09 7.11 99.48 0.71 -10.39 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 17 C 0.12 4.33 4.42 38.15 0.17 4.50 16 18 C -0.14 -4.48 8.46 22.39 0.19 -4.29 16 19 C -0.11 -2.57 10.04 22.25 0.22 -2.35 16 20 C -0.12 -2.42 10.04 22.29 0.22 -2.19 16 21 C -0.10 -2.21 10.04 22.25 0.22 -1.99 16 22 C -0.14 -3.96 9.65 22.39 0.22 -3.74 16 23 C 0.50 11.75 3.66 71.24 0.26 12.02 16 24 O -0.54 -14.12 16.85 21.97 0.37 -13.75 16 25 O -0.50 -10.66 12.14 -51.38 -0.62 -11.29 16 26 C -0.15 -2.75 5.44 -10.79 -0.06 -2.81 16 27 C -0.18 -3.06 9.68 30.62 0.30 -2.76 16 28 C -0.16 -2.37 9.56 30.62 0.29 -2.08 16 29 H 0.06 1.26 6.40 -2.39 -0.02 1.24 16 30 H 0.08 1.58 6.72 -2.39 -0.02 1.56 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.36 10.32 8.34 -89.69 -0.75 9.57 16 33 H 0.08 2.19 5.16 -2.39 -0.01 2.17 16 34 H 0.10 3.00 6.52 -2.39 -0.02 2.98 16 35 H 0.03 1.50 6.55 -2.38 -0.02 1.48 16 36 H 0.04 2.03 7.26 -2.39 -0.02 2.02 16 37 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.11 3.65 7.91 -2.91 -0.02 3.62 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.42 5.10 9.10 -74.06 -0.67 4.42 16 44 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 45 H 0.08 1.54 6.18 -2.39 -0.01 1.52 16 46 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.09 1.54 7.29 -2.39 -0.02 1.52 16 Total: -1.00 -80.73 394.14 1.85 -78.88 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.47 Total: 32.82 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.67 Total: 0.73 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.94 Total: -106.05 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.30 Total: -52.94 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -80.73 1.85 -78.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827728001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.249 kcal (2) G-P(sol) polarization free energy of solvation -80.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds