Wall clock time and date at job start Wed Apr 1 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.56655 * 2 1 4 4 C 1.54474 * 110.51360 * 237.31918 * 2 1 3 5 5 O 1.44419 * 104.80756 * 265.33482 * 4 2 1 6 6 C 1.44432 * 105.27448 * 319.48544 * 5 4 2 7 7 H 1.08994 * 110.46750 * 281.63101 * 6 5 4 8 8 C 1.53002 * 110.37143 * 159.34079 * 6 5 4 9 9 N 1.46495 * 109.47149 * 69.62491 * 8 6 5 10 10 C 1.34779 * 120.00241 * 180.02562 * 9 8 6 11 11 O 1.21361 * 119.99748 * 359.97438 * 10 9 8 12 12 C 1.49346 * 120.00379 * 179.72471 * 10 9 8 13 13 O 1.21380 * 119.99897 * 0.26545 * 12 10 9 14 14 N 1.34775 * 120.00270 * 180.27016 * 12 10 9 15 15 C 1.39742 * 120.00119 * 174.88818 * 14 12 10 16 16 C 1.39345 * 119.95541 * 325.53660 * 15 14 12 17 17 C 1.38475 * 120.42473 * 179.76091 * 16 15 14 18 18 C 1.37688 * 120.32486 * 0.51556 * 17 16 15 19 19 C 1.40752 * 119.90097 * 359.74029 * 18 17 16 20 20 C 1.41409 * 120.20875 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99767 * 25.17710 * 20 19 18 22 22 C 1.39930 * 119.99916 * 205.16994 * 20 19 18 23 23 N 1.30835 * 119.99765 * 16.79013 * 22 20 19 24 24 Si 1.86801 * 120.00123 * 196.78129 * 22 20 19 25 25 H 1.48497 * 109.46740 * 60.00554 * 24 22 20 26 26 H 1.48498 * 109.46950 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47353 * 300.00527 * 24 22 20 28 28 C 1.38298 * 119.95348 * 145.80542 * 15 14 12 29 29 C 1.54478 * 104.79927 * 40.51332 * 6 5 4 30 30 H 1.09002 * 109.47467 * 297.31802 * 1 2 3 31 31 H 1.09004 * 109.47188 * 57.32390 * 1 2 3 32 32 H 1.09000 * 109.47074 * 177.31987 * 1 2 3 33 33 H 1.08998 * 109.47472 * 182.67859 * 3 2 1 34 34 H 1.08997 * 109.46881 * 302.68152 * 3 2 1 35 35 H 1.09006 * 109.46856 * 62.67849 * 3 2 1 36 36 H 1.09004 * 110.37025 * 24.16752 * 4 2 1 37 37 H 1.09003 * 110.37610 * 146.38990 * 4 2 1 38 38 H 1.09003 * 109.47448 * 309.61900 * 8 6 5 39 39 H 1.09005 * 109.46591 * 189.62425 * 8 6 5 40 40 H 0.97001 * 119.99973 * 359.97438 * 9 8 6 41 41 H 0.96993 * 119.99772 * 354.89408 * 14 12 10 42 42 H 1.07997 * 119.78548 * 359.97438 * 16 15 14 43 43 H 1.08002 * 119.83341 * 180.25569 * 17 16 15 44 44 H 1.08000 * 120.05116 * 179.76859 * 18 17 16 45 45 H 0.97003 * 119.99514 * 179.97438 * 23 22 20 46 46 H 1.08007 * 120.16245 * 359.96605 * 28 15 14 47 47 H 1.08996 * 110.51733 * 94.66436 * 29 6 5 48 48 H 1.08999 * 110.50942 * 217.24037 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0675 1.4325 0.0000 4 6 2.0713 -0.7812 -1.2177 5 8 2.3070 -2.1177 -0.7238 6 6 2.8758 -1.9422 0.5921 7 1 3.9305 -1.6770 0.5192 8 6 2.7042 -3.2168 1.4209 9 7 3.5666 -4.2705 0.8804 10 6 3.5811 -5.4899 1.4543 11 8 2.8801 -5.7149 2.4191 12 6 4.4557 -6.5659 0.8996 13 8 5.1571 -6.3409 -0.0652 14 7 4.4662 -7.7869 1.4701 15 6 5.2014 -8.8235 0.8890 16 6 5.3160 -8.9028 -0.4975 17 6 6.0463 -9.9230 -1.0835 18 6 6.6589 -10.8770 -0.3021 19 6 6.5477 -10.8130 1.0995 20 6 7.1737 -11.7896 1.9082 21 1 8.0370 -12.3236 1.5393 22 6 6.6747 -12.0641 3.1864 23 7 5.4676 -11.6800 3.5138 24 14 7.7320 -12.9789 4.4253 25 1 8.9733 -12.2057 4.6831 26 1 6.9779 -13.1430 5.6940 27 1 8.0850 -14.3156 3.8833 28 6 5.8097 -9.7723 1.6904 29 6 2.0714 -0.7814 1.2181 30 1 -0.3634 0.4716 0.9130 31 1 -0.3634 0.5548 -0.8650 32 1 -0.3633 -1.0265 -0.0481 33 1 3.1562 1.4122 -0.0480 34 1 1.6755 1.9676 -0.8650 35 1 1.7534 1.9384 0.9131 36 1 1.3311 -0.7974 -2.0177 37 1 3.0013 -0.3360 -1.5713 38 1 1.6643 -3.5408 1.3781 39 1 2.9801 -3.0168 2.4563 40 1 4.1266 -4.0908 0.1091 41 1 3.9633 -7.9462 2.2841 42 1 4.8351 -8.1619 -1.1189 43 1 6.1323 -9.9730 -2.1589 44 1 7.2243 -11.6728 -0.7640 45 1 5.1216 -11.8706 4.3998 46 1 5.7184 -9.7141 2.7651 47 1 1.2490 -1.1676 1.8203 48 1 2.7214 -0.1485 1.8222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874299586.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:37 Heat of formation + Delta-G solvation = -123.428938 kcal Electronic energy + Delta-G solvation = -29295.521199 eV Core-core repulsion = 25120.914955 eV Total energy + Delta-G solvation = -4174.606244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.01360 -41.00977 -40.09864 -38.88189 -36.70285 -35.95607 -35.33715 -35.03885 -32.01298 -31.50979 -30.50105 -28.24286 -27.87445 -27.20521 -26.77916 -25.24666 -23.17176 -22.59821 -22.41160 -21.23881 -20.34766 -19.76562 -19.31458 -18.03256 -17.57056 -17.39044 -17.07677 -16.64109 -16.62195 -16.46382 -16.39958 -15.96737 -15.46959 -15.11251 -14.91408 -14.81030 -14.57377 -14.41491 -14.20560 -14.08055 -13.64277 -13.52472 -13.46355 -13.21049 -12.90787 -12.83325 -12.79762 -12.58248 -12.47440 -12.34308 -12.26233 -11.84634 -11.72729 -11.61600 -11.60934 -11.54985 -11.23351 -10.96741 -10.70678 -10.62580 -10.42475 -9.36410 -8.94234 -8.58355 -6.36856 0.09771 0.94195 1.04913 1.26309 1.40600 1.51238 1.55585 2.07665 2.22176 2.55428 2.74094 2.85126 3.33671 3.39055 3.68335 3.69179 3.86286 3.93083 4.06950 4.21424 4.37037 4.43220 4.53358 4.55338 4.67145 4.71407 4.75808 4.79618 4.80691 4.84523 4.93538 4.97380 5.00086 5.07025 5.09849 5.11455 5.13813 5.24522 5.30936 5.32571 5.40457 5.64038 5.72352 5.84177 5.91808 5.99778 6.06264 6.25197 6.40977 6.61362 6.67326 6.86631 6.92531 6.99680 8.33238 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.001843 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.963143 B =15187.507530 C =15949.606302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.046 3.954 5 O -0.392 6.392 6 C 0.064 3.936 7 H 0.089 0.911 8 C 0.122 3.878 9 N -0.683 5.683 10 C 0.519 3.481 11 O -0.539 6.539 12 C 0.499 3.501 13 O -0.525 6.525 14 N -0.632 5.632 15 C 0.142 3.858 16 C -0.237 4.237 17 C -0.081 4.081 18 C -0.241 4.241 19 C 0.092 3.908 20 C -0.496 4.496 21 H 0.080 0.920 22 C 0.036 3.964 23 N -0.823 5.823 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.268 1.268 27 H -0.259 1.259 28 C -0.198 4.198 29 C -0.136 4.136 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.420 0.580 41 H 0.420 0.580 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.289 0.711 46 H 0.112 0.888 47 H 0.083 0.917 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 25.147 -2.291 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.030 4.030 5 O -0.312 6.312 6 C 0.006 3.994 7 H 0.107 0.893 8 C 0.000 4.000 9 N -0.336 5.336 10 C 0.299 3.701 11 O -0.417 6.417 12 C 0.281 3.719 13 O -0.401 6.401 14 N -0.277 5.277 15 C 0.049 3.951 16 C -0.258 4.258 17 C -0.099 4.099 18 C -0.261 4.261 19 C 0.089 3.911 20 C -0.525 4.525 21 H 0.098 0.902 22 C -0.179 4.179 23 N -0.448 5.448 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.193 1.193 27 H -0.183 1.183 28 C -0.220 4.220 29 C -0.174 4.174 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.257 0.743 41 H 0.257 0.743 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.511 25.000 -2.210 26.501 hybrid contribution 0.294 -0.565 0.551 0.842 sum -8.218 24.435 -1.659 25.833 Atomic orbital electron populations 1.21844 0.93150 1.01689 1.02697 1.21945 0.96940 0.96651 0.94193 1.21833 1.01082 0.93502 1.02888 1.23738 1.00809 0.81715 0.96777 1.89189 1.83231 1.27725 1.31062 1.23305 0.98912 0.93816 0.83350 0.89277 1.21785 0.94909 0.85121 0.98178 1.45676 1.44362 1.09902 1.33616 1.19710 0.82710 0.83936 0.83745 1.90756 1.42356 1.81545 1.27012 1.20448 0.83360 0.83754 0.84324 1.90748 1.41169 1.81312 1.26881 1.43159 1.47473 1.08406 1.28640 1.17687 0.95979 0.88898 0.92519 1.20488 1.09984 1.03027 0.92321 1.20752 0.96411 0.93728 0.99056 1.21265 1.09108 1.02232 0.93514 1.17765 0.90112 0.91083 0.92150 1.19791 1.13473 1.19326 0.99895 0.90163 1.26751 0.95430 0.95540 1.00205 1.69852 1.15217 1.37884 1.21868 0.85241 0.78746 0.79001 0.76672 1.18647 1.19278 1.18289 1.21046 1.05358 0.96791 0.98773 1.23081 1.00574 0.95712 0.98048 0.91584 0.91711 0.93405 0.91992 0.91748 0.91464 0.88756 0.91182 0.90738 0.88132 0.74284 0.74267 0.87436 0.85643 0.87593 0.90041 0.86981 0.89861 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.29 71.98 0.60 -0.68 16 2 C -0.10 -0.91 1.05 -51.17 -0.05 -0.96 16 3 C -0.14 -0.85 8.32 71.98 0.60 -0.26 16 4 C 0.05 0.58 6.73 72.48 0.49 1.07 16 5 O -0.39 -7.35 11.34 -148.98 -1.69 -9.04 16 6 C 0.06 0.91 3.32 31.10 0.10 1.02 16 7 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 8 C 0.12 2.26 5.28 86.38 0.46 2.72 16 9 N -0.68 -16.65 5.55 -464.51 -2.58 -19.22 16 10 C 0.52 16.45 7.89 87.24 0.69 17.13 16 11 O -0.54 -18.76 16.48 -3.28 -0.05 -18.82 16 12 C 0.50 18.91 7.61 87.24 0.66 19.58 16 13 O -0.52 -21.64 14.22 -3.34 -0.05 -21.69 16 14 N -0.63 -26.17 5.32 -304.99 -1.62 -27.79 16 15 C 0.14 6.88 6.24 38.16 0.24 7.12 16 16 C -0.24 -11.28 8.66 22.59 0.20 -11.08 16 17 C -0.08 -3.72 10.01 22.20 0.22 -3.50 16 18 C -0.24 -12.04 9.79 22.75 0.22 -11.81 16 19 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 20 C -0.50 -26.57 9.05 23.46 0.21 -26.36 16 21 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 22 C 0.04 1.80 5.16 85.25 0.44 2.24 16 23 N -0.82 -42.42 10.94 21.82 0.24 -42.18 16 24 Si 0.98 37.92 29.59 68.60 2.03 39.95 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 26 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 27 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 28 C -0.20 -10.52 8.60 22.86 0.20 -10.32 16 29 C -0.14 -1.34 5.92 31.61 0.19 -1.15 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.37 8.08 -2.39 -0.02 0.35 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.09 1.11 7.87 -2.38 -0.02 1.09 16 37 H 0.07 0.75 7.83 -2.39 -0.02 0.73 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.42 9.77 7.94 -92.71 -0.74 9.04 16 41 H 0.42 16.28 8.29 -92.71 -0.77 15.51 16 42 H 0.11 4.93 6.48 -2.91 -0.02 4.91 16 43 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 44 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 45 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 46 H 0.11 6.12 6.17 -2.91 -0.02 6.10 16 47 H 0.08 0.84 7.46 -2.39 -0.02 0.82 16 48 H 0.10 0.67 7.74 -2.39 -0.02 0.65 16 Total: -1.00 -65.39 397.57 1.11 -64.28 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -0.51 Total: 44.88 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.34 Total: -10.38 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -3.96 Total: -89.20 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -1.79 Total: -49.54 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -65.39 1.11 -64.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874299586.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.145 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds