Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35965 * 120.56919 * 2 1 4 4 C 1.40844 * 119.33733 * 180.27412 * 3 2 1 5 5 O 1.21853 * 119.75392 * 179.73973 * 4 3 2 6 6 O 1.34379 * 120.48939 * 359.72242 * 4 3 2 7 7 C 1.33731 * 121.20515 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68930 * 180.02562 * 7 6 4 9 9 C 1.37589 * 120.61669 * 0.02562 * 7 6 4 10 10 C 1.47524 * 120.25474 * 180.02562 * 9 7 6 11 11 O 1.21599 * 120.00442 * 89.99676 * 10 9 7 12 12 N 1.34770 * 119.99762 * 269.99908 * 10 9 7 13 13 C 1.46507 * 120.00087 * 180.02562 * 12 10 9 14 14 C 1.53949 * 113.58025 * 205.00200 * 13 12 10 15 15 C 1.52903 * 86.78075 * 220.66164 * 14 13 12 16 16 C 1.52910 * 121.13886 * 259.17953 * 15 14 13 17 17 C 1.53950 * 86.78717 * 209.38108 * 16 15 14 18 18 N 1.46496 * 113.58021 * 139.33339 * 17 16 15 19 19 C 1.36940 * 119.99523 * 107.28284 * 18 17 16 20 20 H 1.07998 * 120.00443 * 359.97438 * 19 18 17 21 21 C 1.38824 * 119.99745 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99935 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99860 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47228 * 120.00177 * 23 21 19 26 26 H 1.48498 * 109.47040 * 239.99788 * 23 21 19 27 27 C 1.52917 * 121.14033 * 150.62039 * 15 14 13 28 28 C 1.52907 * 88.04638 * 24.89875 * 15 14 13 29 29 H 1.09005 * 109.46966 * 270.28013 * 1 2 3 30 30 H 1.08996 * 109.47251 * 30.27345 * 1 2 3 31 31 H 1.08992 * 109.47258 * 150.28175 * 1 2 3 32 32 H 1.07998 * 120.32831 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47118 * 269.98228 * 8 7 6 34 34 H 1.09002 * 109.47217 * 29.97839 * 8 7 6 35 35 H 1.09000 * 109.47150 * 149.97512 * 8 7 6 36 36 H 0.97003 * 120.00358 * 0.02562 * 12 10 9 37 37 H 1.09004 * 112.82150 * 336.08416 * 13 12 10 38 38 H 1.08999 * 113.66653 * 106.18857 * 14 13 12 39 39 H 1.09000 * 113.66492 * 335.13051 * 14 13 12 40 40 H 1.09007 * 113.66009 * 323.85167 * 16 15 14 41 41 H 1.09002 * 113.66292 * 94.90250 * 16 15 14 42 42 H 1.09001 * 113.57502 * 270.13001 * 17 16 15 43 43 H 0.96998 * 120.00298 * 287.28307 * 18 17 16 44 44 H 0.96993 * 120.00000 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.65915 * 265.09197 * 27 15 14 46 46 H 1.08997 * 113.66386 * 36.04920 * 27 15 14 47 47 H 1.08995 * 113.66604 * 89.57097 * 28 15 14 48 48 H 1.08996 * 113.66613 * 220.63169 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1404 -0.0059 5 8 4.2339 2.1850 -0.0107 6 8 4.2633 -0.0319 -0.0058 7 6 3.6041 -1.1955 0.0003 8 6 4.3751 -2.4902 0.0007 9 6 2.2284 -1.2214 0.0062 10 6 1.5093 -2.5094 0.0134 11 8 1.2174 -3.0369 1.0695 12 7 1.1759 -3.1016 -1.1504 13 6 0.4612 -4.3805 -1.1432 14 6 0.6763 -5.2133 -2.4201 15 6 -0.8113 -5.5581 -2.3422 16 6 -1.2835 -6.9024 -1.7872 17 6 -2.4968 -6.7653 -2.7248 18 7 -2.8777 -8.0202 -3.3775 19 6 -4.0125 -8.6789 -2.9854 20 1 -4.6263 -8.2735 -2.1947 21 6 -4.3738 -9.8678 -3.6043 22 7 -3.6260 -10.3616 -4.5683 23 14 -5.9212 -10.7667 -3.0689 24 1 -6.5798 -10.0096 -1.9742 25 1 -6.8510 -10.8812 -4.2212 26 1 -5.5629 -12.1242 -2.5853 27 6 -1.6215 -5.8544 -3.6048 28 6 -1.0170 -4.2623 -1.5568 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5094 32 1 1.6732 2.1143 0.0004 33 1 4.5564 -2.8055 -1.0268 34 1 5.3280 -2.3455 0.5098 35 1 3.7987 -3.2562 0.5196 36 1 1.4091 -2.6811 -1.9929 37 1 0.6142 -4.9452 -0.2235 38 1 1.3324 -6.0719 -2.2771 39 1 0.9418 -4.6161 -3.2924 40 1 -0.6270 -7.7350 -2.0402 41 1 -1.5427 -6.8720 -0.7288 42 1 -3.3430 -6.2500 -2.2702 43 1 -2.3263 -8.3845 -4.0875 44 1 -3.8787 -11.1921 -5.0010 45 1 -2.1509 -4.9867 -3.9985 46 1 -1.0597 -6.3909 -4.3693 47 1 -1.2273 -3.3978 -2.1864 48 1 -1.7134 -4.3612 -0.7242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964271340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = -28.698492 kcal Electronic energy + Delta-G solvation = -29686.358745 eV Core-core repulsion = 25515.860321 eV Total energy + Delta-G solvation = -4170.498424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.60446 -40.75615 -39.54951 -38.26638 -36.48214 -35.96530 -33.82802 -33.30103 -32.17102 -29.64174 -29.36040 -28.50568 -25.90047 -25.27396 -25.14879 -24.19322 -22.86067 -22.54425 -21.26764 -20.25678 -18.95214 -18.71755 -17.78356 -17.48213 -17.09529 -17.08442 -16.59743 -15.77659 -15.41204 -15.00307 -14.78572 -14.61957 -14.46248 -14.26605 -14.17280 -14.04520 -13.88904 -13.49596 -13.40559 -13.01571 -12.90571 -12.86845 -12.68410 -12.58872 -12.31199 -12.03861 -11.70675 -11.37530 -11.30957 -11.04362 -10.92321 -10.82511 -10.78929 -10.46627 -10.24745 -10.05577 -9.86741 -9.76476 -9.48049 -9.29262 -8.91894 -8.89500 -6.98672 -5.81248 -3.09727 -0.13928 0.81791 1.67459 2.06866 2.60171 2.79763 3.40482 3.46600 3.48564 3.53465 3.73765 4.06884 4.23482 4.44912 4.47026 4.51271 4.59340 4.61826 4.68359 4.71869 4.77258 4.86475 4.99597 5.06174 5.16036 5.27267 5.31499 5.36276 5.46540 5.54604 5.58534 5.59497 5.69946 5.81569 5.84931 5.86771 5.96733 6.11224 6.17105 6.29846 6.34103 6.36897 6.55260 6.58493 6.85930 6.98239 7.05944 7.10568 7.67802 7.73526 8.37637 9.48855 10.07159 10.41256 11.41246 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.001778 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.019977 B =15744.506826 C =16049.485774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 C -0.277 4.277 4 C 0.499 3.501 5 O -0.472 6.472 6 O -0.256 6.256 7 C 0.191 3.809 8 C -0.123 4.123 9 C -0.263 4.263 10 C 0.580 3.420 11 O -0.522 6.522 12 N -0.708 5.708 13 C 0.121 3.879 14 C -0.130 4.130 15 C -0.101 4.101 16 C -0.142 4.142 17 C 0.168 3.832 18 N -0.713 5.713 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.136 4.136 28 C -0.125 4.125 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.402 0.598 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.862 20.750 6.877 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.057 3.943 3 C -0.297 4.297 4 C 0.351 3.649 5 O -0.361 6.361 6 O -0.165 6.165 7 C 0.141 3.859 8 C -0.179 4.179 9 C -0.267 4.267 10 C 0.364 3.636 11 O -0.398 6.398 12 N -0.358 5.358 13 C 0.017 3.983 14 C -0.168 4.168 15 C -0.102 4.102 16 C -0.183 4.183 17 C 0.056 3.944 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.175 4.175 28 C -0.163 4.163 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.237 0.763 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.963 20.795 7.706 26.752 hybrid contribution -0.669 -0.309 -0.392 0.835 sum 14.293 20.485 7.315 26.028 Atomic orbital electron populations 1.21079 0.88869 1.04472 1.04424 1.20283 0.97565 0.90526 0.85887 1.22254 0.92550 1.00364 1.14497 1.19296 0.88440 0.80710 0.76444 1.91024 1.70849 1.25706 1.48554 1.83421 1.44651 1.14626 1.73774 1.22814 0.90326 0.85642 0.87081 1.21196 1.01738 0.89337 1.05610 1.19872 0.92709 0.95614 1.18531 1.17537 0.78489 0.83072 0.84516 1.90867 1.53799 1.64273 1.30823 1.46169 1.58237 1.23416 1.07995 1.22750 0.92033 0.83317 1.00184 1.23187 0.97818 0.99483 0.96333 1.22086 0.93783 0.95549 0.98823 1.23615 1.01008 0.93633 1.00058 1.21532 0.92883 0.87782 0.92160 1.42423 1.28137 1.22084 1.42467 1.19361 1.00350 1.02728 1.14935 0.91040 1.24766 0.99118 0.98356 0.98746 1.69664 1.39322 1.22019 1.27075 0.86124 0.82805 0.79643 0.77668 1.20518 1.21868 1.21860 1.23271 0.98309 0.99985 0.95916 1.23147 0.95980 0.97296 0.99901 0.88794 0.89577 0.90144 0.81798 0.87534 0.88282 0.87686 0.76339 0.86495 0.90632 0.89830 0.90078 0.92489 0.90799 0.78124 0.93530 0.92279 0.90186 0.89821 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 9.67 36.00 0.35 -0.39 16 2 C 0.06 0.42 5.93 -104.06 -0.62 -0.20 16 3 C -0.28 -2.16 9.65 -39.41 -0.38 -2.54 16 4 C 0.50 5.16 7.93 31.72 0.25 5.41 16 5 O -0.47 -6.43 17.93 -19.60 -0.35 -6.79 16 6 O -0.26 -2.32 9.81 -17.64 -0.17 -2.49 16 7 C 0.19 1.35 7.03 -34.55 -0.24 1.11 16 8 C -0.12 -0.54 9.80 36.00 0.35 -0.19 16 9 C -0.26 -2.02 5.63 -104.97 -0.59 -2.61 16 10 C 0.58 5.15 4.23 -12.48 -0.05 5.10 16 11 O -0.52 -6.72 16.68 5.28 0.09 -6.63 16 12 N -0.71 -5.05 5.35 -53.89 -0.29 -5.34 16 13 C 0.12 1.11 4.24 -66.95 -0.28 0.82 16 14 C -0.13 -1.21 7.59 -26.29 -0.20 -1.41 16 15 C -0.10 -1.23 1.11 -154.71 -0.17 -1.40 16 16 C -0.14 -2.25 7.64 -26.28 -0.20 -2.45 16 17 C 0.17 3.14 4.48 -66.95 -0.30 2.84 16 18 N -0.71 -17.28 5.40 -52.47 -0.28 -17.57 16 19 C -0.24 -6.59 9.97 -15.05 -0.15 -6.74 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C -0.14 -2.01 7.59 -26.28 -0.20 -2.21 16 28 C -0.12 -1.28 7.64 -26.28 -0.20 -1.48 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.33 8.09 -51.93 -0.42 -0.09 16 31 H 0.08 0.49 7.18 -51.93 -0.37 0.11 16 32 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.55 6.99 -51.93 -0.36 0.19 16 36 H 0.40 1.95 8.71 -40.82 -0.36 1.60 16 37 H 0.12 1.28 7.46 -51.93 -0.39 0.89 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 43 H 0.38 9.90 7.92 -40.82 -0.32 9.57 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -33.85 402.89 -9.23 -43.08 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.26 Total: 6.43 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.73 Total: -6.84 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.15 Total: -49.84 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.44 Total: -15.91 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.85 -9.23 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964271340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.378 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds