Wall clock time and date at job start Wed Apr 1 2020 04:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35965 * 120.56919 * 2 1 4 4 C 1.40844 * 119.33733 * 180.27412 * 3 2 1 5 5 O 1.21853 * 119.75392 * 179.73973 * 4 3 2 6 6 O 1.34379 * 120.48939 * 359.72242 * 4 3 2 7 7 C 1.33731 * 121.20515 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68930 * 180.02562 * 7 6 4 9 9 C 1.37589 * 120.61669 * 0.02562 * 7 6 4 10 10 C 1.47524 * 120.25474 * 180.02562 * 9 7 6 11 11 O 1.21599 * 120.00442 * 89.99676 * 10 9 7 12 12 N 1.34770 * 119.99762 * 269.99908 * 10 9 7 13 13 C 1.46507 * 120.00087 * 180.02562 * 12 10 9 14 14 C 1.53949 * 113.58025 * 205.00200 * 13 12 10 15 15 C 1.52903 * 86.78075 * 220.66164 * 14 13 12 16 16 C 1.52910 * 121.13886 * 259.17953 * 15 14 13 17 17 C 1.53950 * 86.78717 * 209.38108 * 16 15 14 18 18 N 1.46496 * 113.58021 * 139.33339 * 17 16 15 19 19 C 1.36940 * 119.99523 * 107.28284 * 18 17 16 20 20 H 1.07998 * 120.00443 * 359.97438 * 19 18 17 21 21 C 1.38824 * 119.99745 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99935 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99860 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47228 * 120.00177 * 23 21 19 26 26 H 1.48498 * 109.47040 * 239.99788 * 23 21 19 27 27 C 1.52917 * 121.14033 * 150.62039 * 15 14 13 28 28 C 1.52907 * 88.04638 * 24.89875 * 15 14 13 29 29 H 1.09005 * 109.46966 * 270.28013 * 1 2 3 30 30 H 1.08996 * 109.47251 * 30.27345 * 1 2 3 31 31 H 1.08992 * 109.47258 * 150.28175 * 1 2 3 32 32 H 1.07998 * 120.32831 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47118 * 269.98228 * 8 7 6 34 34 H 1.09002 * 109.47217 * 29.97839 * 8 7 6 35 35 H 1.09000 * 109.47150 * 149.97512 * 8 7 6 36 36 H 0.97003 * 120.00358 * 0.02562 * 12 10 9 37 37 H 1.09004 * 112.82150 * 336.08416 * 13 12 10 38 38 H 1.08999 * 113.66653 * 106.18857 * 14 13 12 39 39 H 1.09000 * 113.66492 * 335.13051 * 14 13 12 40 40 H 1.09007 * 113.66009 * 323.85167 * 16 15 14 41 41 H 1.09002 * 113.66292 * 94.90250 * 16 15 14 42 42 H 1.09001 * 113.57502 * 270.13001 * 17 16 15 43 43 H 0.96998 * 120.00298 * 287.28307 * 18 17 16 44 44 H 0.96993 * 120.00000 * 180.02562 * 22 21 19 45 45 H 1.09001 * 113.65915 * 265.09197 * 27 15 14 46 46 H 1.08997 * 113.66386 * 36.04920 * 27 15 14 47 47 H 1.08995 * 113.66604 * 89.57097 * 28 15 14 48 48 H 1.08996 * 113.66613 * 220.63169 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6065 1.1404 -0.0059 5 8 4.2339 2.1850 -0.0107 6 8 4.2633 -0.0319 -0.0058 7 6 3.6041 -1.1955 0.0003 8 6 4.3751 -2.4902 0.0007 9 6 2.2284 -1.2214 0.0062 10 6 1.5093 -2.5094 0.0134 11 8 1.2174 -3.0369 1.0695 12 7 1.1759 -3.1016 -1.1504 13 6 0.4612 -4.3805 -1.1432 14 6 0.6763 -5.2133 -2.4201 15 6 -0.8113 -5.5581 -2.3422 16 6 -1.2835 -6.9024 -1.7872 17 6 -2.4968 -6.7653 -2.7248 18 7 -2.8777 -8.0202 -3.3775 19 6 -4.0125 -8.6789 -2.9854 20 1 -4.6263 -8.2735 -2.1947 21 6 -4.3738 -9.8678 -3.6043 22 7 -3.6260 -10.3616 -4.5683 23 14 -5.9212 -10.7667 -3.0689 24 1 -6.5798 -10.0096 -1.9742 25 1 -6.8510 -10.8812 -4.2212 26 1 -5.5629 -12.1242 -2.5853 27 6 -1.6215 -5.8544 -3.6048 28 6 -1.0170 -4.2623 -1.5568 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5094 32 1 1.6732 2.1143 0.0004 33 1 4.5564 -2.8055 -1.0268 34 1 5.3280 -2.3455 0.5098 35 1 3.7987 -3.2562 0.5196 36 1 1.4091 -2.6811 -1.9929 37 1 0.6142 -4.9452 -0.2235 38 1 1.3324 -6.0719 -2.2771 39 1 0.9418 -4.6161 -3.2924 40 1 -0.6270 -7.7350 -2.0402 41 1 -1.5427 -6.8720 -0.7288 42 1 -3.3430 -6.2500 -2.2702 43 1 -2.3263 -8.3845 -4.0875 44 1 -3.8787 -11.1921 -5.0010 45 1 -2.1509 -4.9867 -3.9985 46 1 -1.0597 -6.3909 -4.3693 47 1 -1.2273 -3.3978 -2.1864 48 1 -1.7134 -4.3612 -0.7242 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964271340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:03 Heat of formation + Delta-G solvation = -49.668278 kcal Electronic energy + Delta-G solvation = -29687.268063 eV Core-core repulsion = 25515.860321 eV Total energy + Delta-G solvation = -4171.407742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.28780 -41.67504 -40.46268 -39.07889 -37.32884 -36.96375 -35.25448 -34.07378 -33.33836 -31.38421 -29.91352 -29.06082 -26.71838 -26.53631 -26.23700 -25.62426 -23.92903 -23.10583 -22.14218 -21.47872 -19.76029 -19.42077 -19.22047 -18.54564 -18.18854 -17.82201 -17.41513 -16.89151 -16.48196 -16.02468 -15.95810 -15.63260 -15.23566 -15.18153 -15.13873 -14.81884 -14.60975 -14.50198 -14.31471 -13.97603 -13.71869 -13.57380 -13.46973 -13.41510 -13.15166 -13.04314 -12.96069 -12.84777 -12.79770 -12.37321 -12.32597 -12.09709 -11.82958 -11.66234 -11.53048 -11.30877 -11.08098 -11.01065 -10.82972 -10.69371 -10.06445 -9.54854 -8.95058 -7.94054 -5.21295 -0.72217 0.14593 1.01836 1.36219 1.47717 1.48078 1.58007 1.92734 2.11671 2.57123 2.98609 3.16143 3.37888 3.50415 3.53138 3.57803 3.65278 3.76258 3.88442 3.97798 4.03844 4.17648 4.32205 4.33284 4.39412 4.44661 4.54243 4.56610 4.59059 4.65934 4.70880 4.85201 4.87790 4.94075 4.99952 5.01952 5.06000 5.09023 5.12295 5.14209 5.17959 5.27991 5.46938 5.57195 5.64273 5.74915 5.88364 6.25784 6.29304 6.44825 7.08876 7.34938 8.14075 8.35845 9.29426 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.001778 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.019977 B =15744.506826 C =16049.485774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 C -0.284 4.284 4 C 0.493 3.507 5 O -0.518 6.518 6 O -0.261 6.261 7 C 0.199 3.801 8 C -0.124 4.124 9 C -0.273 4.273 10 C 0.590 3.410 11 O -0.563 6.563 12 N -0.690 5.690 13 C 0.131 3.869 14 C -0.116 4.116 15 C -0.090 4.090 16 C -0.138 4.138 17 C 0.144 3.856 18 N -0.729 5.729 19 C -0.241 4.241 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.294 1.294 26 H -0.295 1.295 27 C -0.123 4.123 28 C -0.120 4.120 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.418 0.582 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.137 22.071 6.862 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.069 3.931 3 C -0.303 4.303 4 C 0.349 3.651 5 O -0.412 6.412 6 O -0.170 6.170 7 C 0.149 3.851 8 C -0.179 4.179 9 C -0.277 4.277 10 C 0.375 3.625 11 O -0.442 6.442 12 N -0.341 5.341 13 C 0.026 3.974 14 C -0.154 4.154 15 C -0.091 4.091 16 C -0.179 4.179 17 C 0.034 3.966 18 N -0.366 5.366 19 C -0.373 4.373 20 H 0.092 0.908 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.222 1.222 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.196 0.804 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.256 0.744 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.124 0.876 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.245 22.159 7.698 27.977 hybrid contribution -0.740 -0.740 -0.345 1.102 sum 14.505 21.419 7.353 26.893 Atomic orbital electron populations 1.21160 0.87513 1.05490 1.04722 1.20451 0.98438 0.89943 0.84272 1.22255 0.91210 1.01336 1.15487 1.19641 0.89187 0.80460 0.75838 1.90995 1.71744 1.27271 1.51144 1.83399 1.45116 1.14986 1.73473 1.23294 0.90536 0.85675 0.85558 1.21362 1.01793 0.87482 1.07260 1.19839 0.92986 0.95276 1.19598 1.17546 0.77820 0.82965 0.84130 1.90863 1.55548 1.65361 1.32382 1.45949 1.57219 1.22531 1.08366 1.22440 0.91578 0.83867 0.99470 1.23159 0.95166 0.99766 0.97307 1.21889 0.96144 0.94471 0.96642 1.23385 0.99435 0.95769 0.99280 1.21954 0.93979 0.86554 0.94070 1.42614 1.27439 1.23833 1.42751 1.19736 1.00838 1.02623 1.14084 0.90753 1.25538 1.02300 0.99625 0.99516 1.69808 1.41148 1.22405 1.28677 0.85120 0.79418 0.78163 0.77363 1.19119 1.22087 1.22232 1.23101 0.97613 0.99186 0.96297 1.23191 0.96434 0.96696 0.99485 0.88747 0.87443 0.90234 0.80376 0.84980 0.87059 0.88270 0.74445 0.88189 0.90592 0.87070 0.91598 0.92682 0.91351 0.79443 0.94098 0.90807 0.90848 0.87555 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.67 71.23 0.69 -0.44 16 2 C 0.07 0.86 5.93 -19.50 -0.12 0.74 16 3 C -0.28 -4.03 9.65 22.38 0.22 -3.81 16 4 C 0.49 9.96 7.93 68.46 0.54 10.50 16 5 O -0.52 -14.38 17.93 18.73 0.34 -14.04 16 6 O -0.26 -4.45 9.81 25.73 0.25 -4.19 16 7 C 0.20 2.42 7.03 25.53 0.18 2.60 16 8 C -0.12 -0.77 9.80 71.24 0.70 -0.07 16 9 C -0.27 -3.59 5.63 -20.09 -0.11 -3.71 16 10 C 0.59 9.09 4.23 86.69 0.37 9.46 16 11 O -0.56 -13.66 16.68 -4.03 -0.07 -13.73 16 12 N -0.69 -7.52 5.35 -442.67 -2.37 -9.89 16 13 C 0.13 2.02 4.24 45.63 0.19 2.21 16 14 C -0.12 -1.76 7.59 30.88 0.23 -1.53 16 15 C -0.09 -1.99 1.11 -52.31 -0.06 -2.05 16 16 C -0.14 -4.31 7.64 30.88 0.24 -4.08 16 17 C 0.14 5.33 4.48 45.63 0.20 5.53 16 18 N -0.73 -35.85 5.40 -319.92 -1.73 -37.58 16 19 C -0.24 -13.22 9.97 84.04 0.84 -12.38 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.08 -4.43 5.50 84.87 0.47 -3.96 16 22 N -0.97 -58.73 13.06 21.66 0.28 -58.45 16 23 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C -0.12 -3.43 7.59 30.89 0.23 -3.20 16 28 C -0.12 -2.09 7.64 30.88 0.24 -1.86 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.11 0.47 8.09 -2.39 -0.02 0.45 16 31 H 0.08 0.71 7.18 -2.39 -0.02 0.70 16 32 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.83 6.99 -2.39 -0.02 0.81 16 36 H 0.42 2.22 8.71 -92.71 -0.81 1.41 16 37 H 0.10 2.00 7.46 -2.38 -0.02 1.99 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 1.17 8.12 -2.39 -0.02 1.15 16 40 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 43 H 0.37 19.71 7.92 -92.71 -0.73 18.97 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -75.83 402.89 3.24 -72.59 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.54 Total: 23.51 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.05 Total: -6.04 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.81 Total: -105.92 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: 0.52 Total: -31.96 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.83 3.24 -72.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964271340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.920 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds