Wall clock time and date at job start Wed Apr 1 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.88910 * 2 1 4 4 C 1.54904 * 111.00464 * 236.07462 * 2 1 3 5 5 N 1.47423 * 104.83533 * 278.93307 * 4 2 1 6 6 C 1.36936 * 125.65009 * 155.91167 * 5 4 2 7 7 H 1.08004 * 120.00347 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00184 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99595 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00208 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46906 * 60.00526 * 10 8 6 12 12 H 1.48497 * 109.47162 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47472 * 300.00654 * 10 8 6 14 14 C 1.47027 * 108.70151 * 335.87596 * 5 4 2 15 15 C 1.54324 * 107.27023 * 1.05451 * 14 5 4 16 16 H 1.08999 * 110.87134 * 140.63067 * 15 14 5 17 17 N 1.46499 * 110.71822 * 263.83153 * 15 14 5 18 18 C 1.34780 * 120.00141 * 268.52451 * 17 15 14 19 19 O 1.21286 * 119.99638 * 359.97438 * 18 17 15 20 20 C 1.50692 * 120.00396 * 180.02562 * 18 17 15 21 21 H 1.09003 * 109.74412 * 55.60713 * 20 18 17 22 22 C 1.53472 * 109.70804 * 294.99741 * 20 18 17 23 23 O 1.43175 * 108.24618 * 180.55861 * 22 20 18 24 24 C 1.36108 * 116.71751 * 46.15607 * 23 22 20 25 25 C 1.38702 * 119.39717 * 162.94300 * 24 23 22 26 26 C 1.38198 * 120.06177 * 179.83578 * 25 24 23 27 27 C 1.38254 * 120.11860 * 359.97438 * 26 25 24 28 28 C 1.38194 * 120.10989 * 0.05163 * 27 26 25 29 29 C 1.38704 * 120.06893 * 0.02562 * 28 27 26 30 30 O 1.36105 * 119.39284 * 179.85741 * 29 28 27 31 31 H 1.08998 * 109.46963 * 296.12433 * 1 2 3 32 32 H 1.09003 * 109.46982 * 56.12376 * 1 2 3 33 33 H 1.08996 * 109.46985 * 176.11960 * 1 2 3 34 34 H 1.08994 * 109.47460 * 183.88231 * 3 2 1 35 35 H 1.09008 * 109.46999 * 303.88035 * 3 2 1 36 36 H 1.09003 * 109.47326 * 63.87546 * 3 2 1 37 37 H 1.09003 * 110.36960 * 37.77839 * 4 2 1 38 38 H 1.09009 * 110.36777 * 159.98797 * 4 2 1 39 39 H 0.97004 * 119.99324 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.87999 * 241.63513 * 14 5 4 41 41 H 1.09000 * 109.88092 * 120.47236 * 14 5 4 42 42 H 0.97003 * 120.00382 * 88.52464 * 17 15 14 43 43 H 1.09003 * 109.70931 * 60.87273 * 22 20 18 44 44 H 1.09001 * 109.70780 * 300.24697 * 22 20 18 45 45 H 1.07997 * 119.96851 * 359.83109 * 25 24 23 46 46 H 1.08002 * 119.93943 * 180.02562 * 26 25 24 47 47 H 1.07995 * 119.94415 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.96798 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0852 -0.8071 -1.1999 5 7 2.0140 -2.2162 -0.7724 6 6 1.9462 -3.3006 -1.6058 7 1 1.9424 -3.1594 -2.6766 8 6 1.8825 -4.5814 -1.0745 9 7 1.8866 -4.7535 0.2304 10 14 1.7908 -6.0608 -2.2114 11 1 2.9945 -6.0925 -3.0804 12 1 1.7313 -7.3043 -1.4018 13 1 0.5732 -5.9616 -3.0557 14 6 2.0285 -2.2643 0.6970 15 6 2.0861 -0.8074 1.2026 16 1 1.4541 -0.6758 2.0808 17 7 3.4666 -0.4150 1.4964 18 6 3.9655 -0.5830 2.7372 19 8 3.2712 -1.0586 3.6106 20 6 5.3853 -0.1788 3.0396 21 1 5.5341 0.8685 2.7765 22 6 6.3554 -1.0568 2.2375 23 8 7.6921 -0.6560 2.5576 24 6 7.9791 -0.4806 3.8765 25 6 9.3038 -0.4460 4.2863 26 6 9.6109 -0.2652 5.6215 27 6 8.5993 -0.1179 6.5523 28 6 7.2774 -0.1520 6.1507 29 6 6.9621 -0.3347 4.8124 30 8 5.6556 -0.3689 4.4325 31 1 -0.3633 0.4525 0.9227 32 1 -0.3633 0.5728 -0.8532 33 1 -0.3633 -1.0253 -0.0695 34 1 3.1629 1.4034 -0.0696 35 1 1.6698 1.9732 -0.8532 36 1 1.7823 1.9303 0.9227 37 1 1.4672 -0.6469 -2.0834 38 1 3.1177 -0.5225 -1.4034 39 1 1.8417 -5.6485 0.6017 40 1 2.9063 -2.8112 1.0412 41 1 1.1218 -2.7475 1.0610 42 1 4.0218 -0.0342 0.7980 43 1 6.1768 -0.9221 1.1707 44 1 6.2113 -2.1035 2.5057 45 1 10.0959 -0.5605 3.5612 46 1 10.6430 -0.2382 5.9383 47 1 8.8425 0.0236 7.5949 48 1 6.4889 -0.0371 6.8798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977582716.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:16 Heat of formation + Delta-G solvation = -46.942858 kcal Electronic energy + Delta-G solvation = -31356.044371 eV Core-core repulsion = 27184.754813 eV Total energy + Delta-G solvation = -4171.289559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55380 -39.84567 -38.27259 -37.61494 -37.14934 -34.01233 -33.24194 -31.53761 -30.82018 -30.74378 -28.95243 -27.93209 -26.82747 -25.69463 -25.37066 -23.52794 -22.97392 -21.70555 -20.56250 -19.99430 -19.07274 -18.74173 -17.85907 -17.42494 -16.76649 -16.37962 -15.81427 -15.64054 -15.25822 -14.88509 -14.74596 -14.48854 -14.09865 -14.02229 -13.99412 -13.94382 -13.85780 -13.37315 -13.27881 -12.65143 -12.28665 -12.12976 -12.08686 -12.03417 -11.73988 -11.53135 -11.44131 -11.27380 -11.13328 -11.04139 -10.79625 -10.72589 -10.46845 -10.34270 -10.09981 -9.94497 -9.69254 -9.62190 -8.83471 -8.70376 -8.59631 -8.23811 -6.88229 -5.73330 -3.08491 1.11286 1.12903 2.49756 2.60573 2.93152 3.38341 3.42920 3.44932 3.51928 3.61528 4.02704 4.42582 4.46535 4.58380 4.63446 4.79662 4.87190 4.93254 5.07672 5.19377 5.20980 5.23096 5.23612 5.36044 5.49261 5.56245 5.65479 5.73036 5.85981 5.94682 5.94824 6.00716 6.10035 6.12341 6.16092 6.27026 6.30868 6.43318 6.48802 6.53344 6.58819 6.61459 6.72117 6.87018 7.23057 7.47734 7.54709 7.66591 7.79812 8.20478 8.34463 9.17552 9.78318 10.42973 11.37232 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.003035 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.111919 B = 9224.304491 C =10434.669587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.092 0.908 17 N -0.702 5.702 18 C 0.523 3.477 19 O -0.509 6.509 20 C 0.036 3.964 21 H 0.108 0.892 22 C 0.034 3.966 23 O -0.302 6.302 24 C 0.047 3.953 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.112 4.112 29 C 0.055 3.945 30 O -0.278 6.278 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.015 0.985 39 H 0.254 0.746 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.397 0.603 43 H 0.131 0.869 44 H 0.090 0.910 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 14.335 6.984 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.049 3.951 15 C 0.020 3.980 16 H 0.110 0.890 17 N -0.355 5.355 18 C 0.305 3.695 19 O -0.383 6.383 20 C -0.024 4.024 21 H 0.125 0.875 22 C -0.042 4.042 23 O -0.216 6.216 24 C 0.002 3.998 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.131 4.131 29 C 0.010 3.990 30 O -0.191 6.191 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.232 0.768 43 H 0.149 0.851 44 H 0.108 0.892 45 H 0.152 0.848 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.526 13.710 7.606 18.884 hybrid contribution 0.149 -0.741 -1.074 1.313 sum 10.675 12.969 6.533 18.023 Atomic orbital electron populations 1.21603 0.93135 1.03038 1.00619 1.22029 0.96490 0.94118 0.96422 1.21685 1.00157 0.95585 1.01494 1.21639 0.96573 0.85744 0.94379 1.44422 1.86998 0.99708 1.01710 1.18966 1.44238 0.83923 0.88867 0.90502 1.24810 1.02076 0.97398 0.95961 1.69942 1.56428 1.21034 1.09147 0.86221 0.77864 0.82315 0.79445 1.21233 1.21622 1.21185 1.21539 1.01794 0.88253 0.83510 1.22585 0.80200 0.97780 0.97420 0.88988 1.45886 1.15329 1.64154 1.10130 1.19449 0.86940 0.79658 0.83436 1.90768 1.59449 1.42306 1.45762 1.22946 0.95534 1.01521 0.82422 0.87493 1.23620 0.79626 0.99256 1.01713 1.86333 1.30298 1.84194 1.20761 1.18992 0.93887 1.03460 0.83468 1.20449 0.93168 1.03048 0.96545 1.20909 0.99660 1.01277 0.91955 1.20911 0.91482 1.01154 0.99938 1.20477 0.97396 1.02403 0.92820 1.19049 0.82697 1.03029 0.94253 1.86414 1.21270 1.87911 1.23491 0.93281 0.92787 0.91125 0.93135 0.92518 0.92801 0.93985 0.96710 0.93589 0.93376 0.92579 0.76838 0.85149 0.89228 0.84781 0.85128 0.85072 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.57 37.16 0.32 -1.60 16 2 C -0.09 -1.38 0.83 -152.36 -0.13 -1.51 16 3 C -0.13 -1.56 8.22 37.16 0.31 -1.26 16 4 C 0.14 2.66 6.12 -2.53 -0.02 2.64 16 5 N -0.60 -14.32 3.38 -170.07 -0.57 -14.90 16 6 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 7 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 9 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 10 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.17 4.09 4.79 -3.06 -0.01 4.08 16 15 C 0.12 2.23 2.59 -66.10 -0.17 2.06 16 16 H 0.09 1.75 7.45 -51.93 -0.39 1.36 16 17 N -0.70 -10.73 4.42 -52.03 -0.23 -10.96 16 18 C 0.52 8.69 7.20 -10.99 -0.08 8.61 16 19 O -0.51 -10.79 16.16 -14.16 -0.23 -11.02 16 20 C 0.04 0.50 3.44 -27.64 -0.09 0.41 16 21 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 22 C 0.03 0.44 6.52 37.40 0.24 0.68 16 23 O -0.30 -4.02 10.42 -32.86 -0.34 -4.37 16 24 C 0.05 0.62 6.49 -39.14 -0.25 0.36 16 25 C -0.11 -1.22 9.96 -39.42 -0.39 -1.61 16 26 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 27 C -0.12 -1.08 10.04 -39.59 -0.40 -1.47 16 28 C -0.11 -1.30 9.96 -39.43 -0.39 -1.70 16 29 C 0.06 0.77 6.49 -39.14 -0.25 0.51 16 30 O -0.28 -4.40 9.62 -47.04 -0.45 -4.85 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 34 H 0.05 0.54 6.48 -51.93 -0.34 0.20 16 35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.02 0.27 7.98 -51.92 -0.41 -0.15 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 1.29 7.41 -51.93 -0.38 0.91 16 41 H 0.06 1.51 7.38 -51.93 -0.38 1.13 16 42 H 0.40 4.99 6.97 -40.82 -0.28 4.71 16 43 H 0.13 1.39 7.99 -51.93 -0.42 0.98 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -33.17 387.07 -9.63 -42.80 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.21 Total: 4.67 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.97 Total: 2.14 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.23 Total: -52.03 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.02 Total: -20.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.17 -9.63 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977582716.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.144 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds