Wall clock time and date at job start Wed Apr 1 2020 04:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.88512 * 2 1 4 4 C 1.54905 * 111.00248 * 236.07819 * 2 1 3 5 5 N 1.47420 * 104.83189 * 278.92747 * 4 2 1 6 6 C 1.36941 * 125.64976 * 155.91214 * 5 4 2 7 7 H 1.07994 * 119.99702 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00195 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00141 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46859 * 0.02562 * 10 8 6 12 12 H 1.48492 * 109.47387 * 120.00072 * 10 8 6 13 13 H 1.48502 * 109.47098 * 240.00356 * 10 8 6 14 14 C 1.47023 * 108.70460 * 335.87765 * 5 4 2 15 15 C 1.54327 * 107.27072 * 1.05258 * 14 5 4 16 16 H 1.09004 * 110.87002 * 140.62654 * 15 14 5 17 17 N 1.46499 * 110.72202 * 263.83282 * 15 14 5 18 18 C 1.34777 * 119.99665 * 268.80009 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 C 1.54893 * 129.09025 * 299.92688 * 20 18 17 22 22 C 1.57172 * 77.91788 * 180.16890 * 21 20 18 23 23 C 1.52994 * 129.24849 * 179.19453 * 22 21 20 24 24 F 1.39900 * 109.47639 * 301.29041 * 23 22 21 25 25 F 1.39901 * 109.47084 * 61.29402 * 23 22 21 26 26 F 1.39904 * 109.47140 * 181.28938 * 23 22 21 27 27 C 1.54416 * 83.72575 * 42.47875 * 22 21 20 28 28 C 1.54888 * 83.77290 * 317.35968 * 22 21 20 29 29 H 1.08999 * 109.47139 * 296.11695 * 1 2 3 30 30 H 1.08998 * 109.47673 * 56.11788 * 1 2 3 31 31 H 1.08997 * 109.47001 * 176.12288 * 1 2 3 32 32 H 1.09000 * 109.47246 * 183.88223 * 3 2 1 33 33 H 1.09012 * 109.46907 * 303.88027 * 3 2 1 34 34 H 1.09001 * 109.47601 * 63.87665 * 3 2 1 35 35 H 1.08999 * 110.36817 * 37.77097 * 4 2 1 36 36 H 1.09007 * 110.36413 * 159.98332 * 4 2 1 37 37 H 0.97005 * 120.00079 * 179.97438 * 9 8 6 38 38 H 1.09006 * 109.87863 * 241.63787 * 14 5 4 39 39 H 1.08997 * 109.88506 * 120.47372 * 14 5 4 40 40 H 0.97001 * 119.99790 * 88.51722 * 17 15 14 41 41 H 1.08994 * 114.98355 * 291.97133 * 21 20 18 42 42 H 1.09010 * 114.97079 * 67.14123 * 21 20 18 43 43 H 1.09002 * 114.93066 * 205.06098 * 27 22 21 44 44 H 1.08995 * 114.93515 * 70.03510 * 27 22 21 45 45 H 1.09000 * 116.12481 * 290.12036 * 28 22 21 46 46 H 1.09002 * 113.82894 * 154.95682 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0852 -0.8070 -1.2000 5 7 2.0140 -2.2161 -0.7725 6 6 1.9462 -3.3006 -1.6059 7 1 1.9423 -3.1593 -2.6765 8 6 1.8825 -4.5814 -1.0745 9 7 1.8868 -4.7535 0.2303 10 14 1.7908 -6.0607 -2.2114 11 1 1.8016 -5.6012 -3.6235 12 1 2.9599 -6.9439 -1.9699 13 1 0.5386 -6.8131 -1.9447 14 6 2.0286 -2.2643 0.6969 15 6 2.0862 -0.8073 1.2026 16 1 1.4541 -0.6758 2.0808 17 7 3.4667 -0.4148 1.4963 18 6 3.9673 -0.5880 2.7357 19 8 3.2733 -1.0640 3.6089 20 6 5.3893 -0.1899 3.0362 21 6 6.7035 -0.7062 2.3994 22 6 7.2338 0.3395 3.4461 23 6 8.6748 0.7363 3.7730 24 9 9.3872 -0.3939 4.1878 25 9 9.2797 1.2766 2.6331 26 9 8.6751 1.6895 4.7971 27 6 6.1675 -0.2941 4.3659 28 6 6.0576 1.2031 2.9269 29 1 -0.3633 0.4524 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3633 -1.0253 -0.0695 32 1 3.1629 1.4035 -0.0696 33 1 1.6697 1.9732 -0.8533 34 1 1.7822 1.9303 0.9227 35 1 1.4671 -0.6469 -2.0834 36 1 3.1176 -0.5223 -1.4035 37 1 1.8419 -5.6485 0.6017 38 1 2.9065 -2.8111 1.0411 39 1 1.1220 -2.7475 1.0610 40 1 4.0218 -0.0341 0.7978 41 1 6.9492 -1.7433 2.6275 42 1 6.8424 -0.4405 1.3513 43 1 5.8042 0.3547 5.1629 44 1 6.3870 -1.3109 4.6914 45 1 6.1562 1.5879 1.9118 46 1 5.7026 1.9416 3.6458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977658860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:36 Heat of formation + Delta-G solvation = -81.616877 kcal Electronic energy + Delta-G solvation = -31840.047970 eV Core-core repulsion = 27125.398092 eV Total energy + Delta-G solvation = -4714.649877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.09217 -48.64619 -48.62797 -43.22031 -40.93093 -39.12916 -35.68445 -34.47435 -32.58916 -30.16669 -29.08445 -28.05095 -27.41200 -26.97155 -26.93924 -25.88201 -24.45674 -22.25922 -21.61661 -20.53592 -19.61248 -19.41656 -19.40683 -18.68344 -18.66133 -17.38026 -17.04335 -16.54882 -15.94415 -15.65803 -15.62804 -15.60511 -15.45180 -15.26275 -15.23768 -15.06556 -15.00931 -14.79216 -14.78997 -14.73757 -14.01625 -13.78425 -13.43383 -13.14336 -12.99962 -12.94975 -12.86840 -12.74386 -12.72389 -12.64657 -12.54629 -12.32737 -12.06314 -11.84931 -11.73352 -11.56317 -11.51292 -11.47793 -11.28725 -10.94433 -10.72448 -10.00479 -8.87225 -7.82821 -5.18779 1.41835 1.45261 1.45563 1.53141 1.55958 2.10640 2.40911 2.49739 2.51569 2.72668 3.01588 3.20839 3.35447 3.36350 3.51489 3.58204 3.61798 3.73137 3.84637 3.99116 4.10426 4.42364 4.44432 4.48219 4.54526 4.61131 4.72124 4.75393 4.77977 4.82363 4.85146 4.88123 4.91582 4.98827 5.07932 5.16325 5.19627 5.32185 5.38787 5.48195 5.59266 5.72720 5.76291 6.19144 6.57368 7.09817 7.24723 7.79707 8.43362 9.26458 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003015 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.536926 B = 9283.271539 C =10362.044374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.233 4.233 7 H 0.087 0.913 8 C -0.068 4.068 9 N -0.953 5.953 10 Si 0.974 3.026 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.296 1.296 14 C 0.192 3.808 15 C 0.137 3.863 16 H 0.080 0.920 17 N -0.688 5.688 18 C 0.572 3.428 19 O -0.579 6.579 20 C -0.167 4.167 21 C -0.072 4.072 22 C -0.213 4.213 23 C 0.528 3.472 24 F -0.182 7.182 25 F -0.175 7.175 26 F -0.177 7.177 27 C -0.069 4.069 28 C -0.050 4.050 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.242 0.758 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.411 0.589 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.837 18.741 3.979 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.602 5.602 10 Si 0.803 3.197 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.224 1.224 14 C 0.066 3.934 15 C 0.031 3.969 16 H 0.098 0.902 17 N -0.339 5.339 18 C 0.359 3.641 19 O -0.459 6.459 20 C -0.170 4.170 21 C -0.109 4.109 22 C -0.215 4.215 23 C 0.474 3.526 24 F -0.164 7.164 25 F -0.157 7.157 26 F -0.158 7.158 27 C -0.107 4.107 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.249 0.751 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.137 0.863 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.358 18.214 4.571 21.446 hybrid contribution 0.294 -1.695 -0.359 1.758 sum 10.652 16.518 4.212 20.102 Atomic orbital electron populations 1.21600 0.93028 1.00997 1.02607 1.21989 0.96551 0.95994 0.93022 1.21650 1.01170 0.92214 1.03033 1.21904 0.97784 0.83204 0.95804 1.44677 1.86573 1.01602 1.01730 1.19501 1.41955 0.85017 0.89788 0.89540 1.25619 1.03037 1.00241 0.97175 1.70229 1.58637 1.20370 1.10998 0.85066 0.76408 0.79505 0.78721 1.18540 1.22391 1.22379 1.21097 0.97188 0.91455 0.83684 1.22115 0.82457 0.94602 0.97725 0.90226 1.45687 1.13953 1.62998 1.11223 1.18888 0.86282 0.76852 0.82079 1.90709 1.61310 1.45984 1.47847 1.23536 0.90715 1.01838 1.00932 1.24565 0.89391 0.98045 0.98919 1.25109 0.90403 1.03213 1.02764 1.18344 0.85975 0.74224 0.74082 1.93199 1.80611 1.52058 1.90491 1.93205 1.85223 1.86340 1.50890 1.93201 1.96898 1.65261 1.60459 1.23777 0.90115 1.01749 0.95058 1.24024 0.87573 0.92850 1.04266 0.91621 0.90367 0.95249 0.91489 0.90503 0.91634 0.93519 0.94822 0.94830 0.98025 0.97736 0.75110 0.89945 0.86913 0.88278 0.89967 0.86266 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.62 8.57 71.98 0.62 -3.01 16 2 C -0.07 -2.17 0.83 -50.79 -0.04 -2.21 16 3 C -0.12 -2.37 8.22 71.98 0.59 -1.77 16 4 C 0.14 4.94 6.12 86.85 0.53 5.47 16 5 N -0.62 -30.33 3.38 -691.99 -2.34 -32.67 16 6 C -0.23 -12.76 10.28 84.03 0.86 -11.89 16 7 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 8 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 9 N -0.95 -58.88 10.31 21.65 0.22 -58.65 16 10 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 14 C 0.19 9.58 4.79 86.73 0.42 10.00 16 15 C 0.14 4.97 2.59 46.18 0.12 5.09 16 16 H 0.08 3.10 7.46 -2.39 -0.02 3.08 16 17 N -0.69 -20.44 4.45 -436.91 -1.95 -22.39 16 18 C 0.57 18.12 7.94 87.66 0.70 18.82 16 19 O -0.58 -24.08 16.74 -3.04 -0.05 -24.14 16 20 C -0.17 -3.66 3.36 -63.67 -0.21 -3.88 16 21 C -0.07 -1.35 7.95 31.90 0.25 -1.09 16 22 C -0.21 -3.53 3.03 -62.11 -0.19 -3.72 16 23 C 0.53 9.16 3.63 71.98 0.26 9.43 16 24 F -0.18 -3.62 17.32 44.97 0.78 -2.85 16 25 F -0.18 -3.07 17.32 44.97 0.78 -2.29 16 26 F -0.18 -3.14 17.32 44.97 0.78 -2.36 16 27 C -0.07 -1.39 7.78 30.61 0.24 -1.15 16 28 C -0.05 -0.69 7.84 31.08 0.24 -0.45 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 32 H 0.07 1.09 6.48 -2.39 -0.02 1.08 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 36 H 0.03 1.11 7.98 -2.38 -0.02 1.10 16 37 H 0.24 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.00 0.09 7.41 -2.38 -0.02 0.07 16 39 H 0.00 0.26 7.38 -2.39 -0.02 0.25 16 40 H 0.41 9.68 7.12 -92.71 -0.66 9.02 16 41 H 0.08 1.74 7.91 -2.39 -0.02 1.72 16 42 H 0.11 1.71 7.97 -2.38 -0.02 1.69 16 43 H 0.10 1.79 7.94 -2.39 -0.02 1.77 16 44 H 0.08 1.78 7.91 -2.39 -0.02 1.76 16 45 H 0.12 1.11 7.97 -2.39 -0.02 1.09 16 46 H 0.10 1.21 7.93 -2.39 -0.02 1.19 16 Total: -1.00 -73.30 382.24 5.45 -67.85 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.35 Total: 13.18 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 4.85 Total: 16.22 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -4.06 Total: -113.71 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.14 kcal Atomic # 9 Polarization: -9.83 SS G_CDS: 2.34 Total: -7.49 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.30 5.45 -67.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977658860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.771 kcal (2) G-P(sol) polarization free energy of solvation -73.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds