Wall clock time and date at job start Wed Apr 1 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.80364 * 2 1 4 4 C 1.54947 * 110.73818 * 236.70410 * 2 1 3 5 5 N 1.48112 * 103.25651 * 279.04507 * 4 2 1 6 6 C 1.34777 * 127.03658 * 140.67592 * 5 4 2 7 7 O 1.21285 * 119.99471 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00559 * 180.02562 * 6 5 4 9 9 C 1.54895 * 129.08927 * 299.94109 * 8 6 5 10 10 C 1.57169 * 77.91618 * 180.16032 * 9 8 6 11 11 C 1.53004 * 129.25266 * 179.19534 * 10 9 8 12 12 F 1.39903 * 109.46677 * 301.28724 * 11 10 9 13 13 F 1.39904 * 109.46963 * 61.27973 * 11 10 9 14 14 F 1.39895 * 109.47290 * 181.28014 * 11 10 9 15 15 C 1.54408 * 129.01699 * 179.97438 * 8 6 5 16 16 C 1.54891 * 83.77312 * 317.35385 * 10 9 8 17 17 C 1.47490 * 105.93210 * 320.70523 * 5 4 2 18 18 C 1.54004 * 107.08347 * 25.45289 * 17 5 4 19 19 H 1.08993 * 110.32594 * 117.68745 * 18 17 5 20 20 N 1.46505 * 110.32373 * 239.80015 * 18 17 5 21 21 C 1.36931 * 119.99788 * 273.54477 * 20 18 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 18 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08996 * 109.46957 * 296.71286 * 1 2 3 30 30 H 1.09002 * 109.47169 * 56.70581 * 1 2 3 31 31 H 1.08994 * 109.47238 * 176.70786 * 1 2 3 32 32 H 1.08998 * 109.47246 * 183.28830 * 3 2 1 33 33 H 1.09002 * 109.47233 * 303.28951 * 3 2 1 34 34 H 1.09001 * 109.47213 * 63.29012 * 3 2 1 35 35 H 1.08995 * 110.65779 * 160.59970 * 4 2 1 36 36 H 1.09003 * 110.79810 * 37.55363 * 4 2 1 37 37 H 1.09002 * 114.97326 * 291.94982 * 9 8 6 38 38 H 1.08994 * 114.97896 * 67.12697 * 9 8 6 39 39 H 1.09006 * 114.93160 * 293.13110 * 15 8 6 40 40 H 1.08994 * 114.93449 * 68.15812 * 15 8 6 41 41 H 1.09001 * 116.12257 * 290.12654 * 16 10 9 42 42 H 1.09002 * 113.83516 * 154.96009 * 16 10 9 43 43 H 1.08991 * 109.91463 * 266.08548 * 17 5 4 44 44 H 1.09000 * 110.07078 * 144.90127 * 17 5 4 45 45 H 0.97000 * 119.99792 * 93.54272 * 20 18 17 46 46 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4302 0.0000 4 6 2.0787 -0.7955 -1.2112 5 7 1.9870 -2.2039 -0.7622 6 6 1.6219 -3.2697 -1.5020 7 8 1.3250 -3.1247 -2.6690 8 6 1.5828 -4.6415 -0.8795 9 6 2.7302 -5.4498 -0.2243 10 6 1.5111 -6.4307 -0.0773 11 6 1.4645 -7.8323 0.5347 12 9 2.3582 -8.6675 -0.1444 13 9 1.8246 -7.7638 1.8849 14 9 0.1685 -8.3470 0.4232 15 6 1.1998 -5.9911 -1.5244 16 6 0.7419 -5.1462 0.3195 17 6 2.3762 -2.2015 0.6604 18 6 2.0774 -0.7937 1.2088 19 1 1.3292 -0.8463 1.9995 20 7 3.3052 -0.1724 1.7116 21 6 3.7114 -0.4027 2.9989 22 1 3.1270 -1.0427 3.6433 23 6 4.8779 0.1814 3.4735 24 7 5.5904 0.9609 2.6880 25 14 5.4362 -0.1389 5.2272 26 1 5.6608 -1.5945 5.4171 27 1 6.7005 0.5955 5.4860 28 1 4.3905 0.3280 6.1726 29 1 -0.3633 0.4619 0.9180 30 1 -0.3633 0.5641 -0.8590 31 1 -0.3633 -1.0259 -0.0590 32 1 3.1615 1.4055 -0.0589 33 1 1.6752 1.9702 -0.8590 34 1 1.7706 1.9339 0.9180 35 1 3.1145 -0.5228 -1.4130 36 1 1.4602 -0.6321 -2.0938 37 1 3.5058 -5.7877 -0.9116 38 1 3.1164 -5.0305 0.7047 39 1 0.1534 -6.0802 -1.8167 40 1 1.8996 -6.3562 -2.2761 41 1 1.0041 -4.7080 1.2825 42 1 -0.3315 -5.2017 0.1379 43 1 3.4401 -2.4186 0.7546 44 1 1.7960 -2.9441 1.2082 45 1 3.8303 0.4020 1.1327 46 1 6.4052 1.3693 3.0199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996679708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:39 Heat of formation + Delta-G solvation = -67.160507 kcal Electronic energy + Delta-G solvation = -32006.121385 eV Core-core repulsion = 27292.098383 eV Total energy + Delta-G solvation = -4714.023002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.28381 -47.83857 -47.81383 -42.42786 -39.72222 -37.76036 -34.12184 -33.19991 -30.87056 -28.63941 -27.86638 -26.93869 -26.69223 -26.23888 -26.06080 -24.10529 -23.45399 -21.68470 -20.27073 -18.89678 -18.61814 -18.60386 -18.31003 -17.46249 -17.27780 -16.28072 -15.65139 -15.02635 -14.94984 -14.83722 -14.76518 -14.54065 -14.48494 -14.25446 -14.15824 -13.97869 -13.97768 -13.89808 -13.69359 -13.26162 -12.79632 -12.54214 -12.20119 -12.08047 -11.94288 -11.84410 -11.80752 -11.69597 -11.59029 -11.38404 -11.02623 -10.94661 -10.74693 -10.70918 -10.61385 -10.51067 -10.30173 -9.92389 -9.81348 -9.67173 -9.05843 -8.43976 -7.13462 -5.89657 -3.19909 2.34284 2.45732 2.99326 3.20214 3.29695 3.36234 3.41645 3.42534 3.52553 3.87159 4.00439 4.19661 4.36688 4.40454 4.47475 4.52747 4.92774 5.02715 5.15407 5.17649 5.21986 5.32361 5.41379 5.47405 5.49504 5.54413 5.57783 5.62630 5.66241 5.72143 5.84001 5.91414 6.03270 6.09730 6.22490 6.23315 6.30687 6.37718 6.42379 6.55466 6.76765 6.89230 7.58146 7.72297 8.22330 8.28983 9.40698 9.94749 10.29471 11.32291 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.003590 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.418508 B = 7798.043880 C = 9813.229810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.591 3.409 7 O -0.544 6.544 8 C -0.144 4.144 9 C -0.072 4.072 10 C -0.226 4.226 11 C 0.523 3.477 12 F -0.176 7.176 13 F -0.174 7.174 14 F -0.177 7.177 15 C -0.063 4.063 16 C -0.073 4.073 17 C 0.071 3.929 18 C 0.176 3.824 19 H 0.066 0.934 20 N -0.714 5.714 21 C -0.249 4.249 22 H 0.071 0.929 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.389 0.611 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -12.016 -6.582 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.183 4.183 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.378 3.622 7 O -0.422 6.422 8 C -0.147 4.147 9 C -0.110 4.110 10 C -0.227 4.227 11 C 0.469 3.531 12 F -0.158 7.158 13 F -0.155 7.155 14 F -0.159 7.159 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.055 4.055 18 C 0.064 3.936 19 H 0.083 0.917 20 N -0.356 5.356 21 C -0.380 4.380 22 H 0.089 0.911 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.226 0.774 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.209 -12.059 -7.040 17.298 hybrid contribution 0.666 -0.452 1.075 1.343 sum -9.543 -12.511 -5.966 16.828 Atomic orbital electron populations 1.21704 0.94051 1.01305 1.01595 1.21923 0.95490 0.96187 0.95345 1.21593 1.01741 0.93653 1.01320 1.22586 1.01289 0.79188 0.97335 1.48671 1.64963 1.07114 1.12758 1.17908 0.76971 0.82377 0.84904 1.90700 1.50193 1.85167 1.16138 1.23590 0.99933 0.93118 0.98032 1.24511 0.93701 0.91154 1.01620 1.25334 1.04420 0.91258 1.01685 1.18399 0.73479 0.85324 0.75894 1.93199 1.68579 1.74010 1.79981 1.93219 1.91652 1.96575 1.34099 1.93194 1.38335 1.88498 1.95828 1.23687 1.03080 0.91131 0.92152 1.24062 0.99246 0.89622 0.98086 1.23605 1.00946 1.01881 0.79075 1.21082 0.90478 0.88933 0.93116 0.91657 1.42629 1.24098 1.56450 1.12468 1.19177 1.05147 1.24829 0.88834 0.91147 1.24727 0.97722 0.99732 0.98077 1.69636 1.17144 1.35341 1.35528 0.86300 0.77878 0.77623 0.84542 1.21208 1.21679 1.21187 0.92289 0.92891 0.93052 0.91382 0.93673 0.91649 0.90715 0.90369 0.89025 0.88351 0.89184 0.89117 0.88428 0.89220 0.90243 0.91967 0.77431 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.50 37.16 0.32 -1.33 16 2 C -0.09 -1.29 0.93 -152.63 -0.14 -1.43 16 3 C -0.13 -1.91 7.83 37.16 0.29 -1.62 16 4 C 0.12 1.76 5.98 -2.13 -0.01 1.74 16 5 N -0.60 -8.97 3.19 -169.77 -0.54 -9.51 16 6 C 0.59 8.87 8.00 -10.99 -0.09 8.79 16 7 O -0.54 -9.76 17.30 5.55 0.10 -9.66 16 8 C -0.14 -1.69 2.60 -172.26 -0.45 -2.13 16 9 C -0.07 -0.76 7.92 -24.70 -0.20 -0.96 16 10 C -0.23 -2.23 3.03 -169.84 -0.51 -2.74 16 11 C 0.52 5.41 3.63 37.16 0.13 5.54 16 12 F -0.18 -1.89 17.32 2.25 0.04 -1.85 16 13 F -0.17 -1.96 17.32 2.25 0.04 -1.92 16 14 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 15 C -0.06 -0.63 7.78 -26.72 -0.21 -0.84 16 16 C -0.07 -0.72 7.38 -25.99 -0.19 -0.91 16 17 C 0.07 1.09 6.52 -2.98 -0.02 1.07 16 18 C 0.18 3.02 3.09 -66.55 -0.21 2.82 16 19 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 20 N -0.71 -15.62 4.51 -52.09 -0.23 -15.85 16 21 C -0.25 -6.21 9.97 -15.06 -0.15 -6.36 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.93 -26.07 13.06 55.49 0.72 -25.35 16 25 Si 0.91 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.07 1.17 6.23 -51.93 -0.32 0.85 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 36 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 37 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 38 H 0.10 1.05 7.97 -51.93 -0.41 0.64 16 39 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 40 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 41 H 0.10 0.95 6.53 -51.93 -0.34 0.61 16 42 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 43 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 44 H 0.06 0.84 5.87 -51.93 -0.30 0.54 16 45 H 0.39 9.08 5.51 -40.82 -0.23 8.86 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -28.38 381.64 -7.19 -35.56 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.55 Total: 7.27 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.53 Total: 1.38 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.05 Total: -50.71 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.10 Total: -9.66 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.12 Total: -5.59 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.38 -7.19 -35.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996679708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.596 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds