Wall clock time and date at job start Wed Apr 1 2020 05:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30866 * 126.21021 * 2 1 4 4 C 1.34572 * 107.29085 * 180.28037 * 3 2 1 5 5 C 1.47830 * 126.02161 * 179.75537 * 4 3 2 6 6 O 1.21561 * 119.99930 * 179.97438 * 5 4 3 7 7 N 1.34776 * 120.00019 * 359.97203 * 5 4 3 8 8 C 1.46501 * 120.00179 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.49467 * 325.00161 * 8 7 5 10 10 C 1.53038 * 109.50208 * 204.93376 * 8 7 5 11 11 C 1.53031 * 109.54303 * 178.71630 * 10 8 7 12 12 C 1.53191 * 109.34092 * 61.31325 * 11 10 8 13 13 N 1.46922 * 108.77779 * 305.38561 * 12 11 10 14 14 C 1.36936 * 120.63115 * 233.58590 * 13 12 11 15 15 H 1.08007 * 119.99807 * 27.68846 * 14 13 12 16 16 C 1.38810 * 119.99914 * 207.69450 * 14 13 12 17 17 N 1.31616 * 120.00514 * 17.36081 * 16 14 13 18 18 Si 1.86808 * 119.99898 * 197.36530 * 16 14 13 19 19 H 1.48506 * 109.46746 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47071 * 119.99536 * 18 16 14 21 21 H 1.48493 * 109.47012 * 239.99666 * 18 16 14 22 22 C 1.46931 * 118.73971 * 53.60376 * 13 12 11 23 23 N 1.31562 * 107.95310 * 359.73134 * 4 3 2 24 24 N 1.28848 * 108.70775 * 0.02562 * 23 4 3 25 25 C 1.40099 * 125.76878 * 180.02562 * 24 23 4 26 26 N 1.33631 * 125.59785 * 0.02819 * 25 24 23 27 27 C 1.30805 * 109.79279 * 179.73637 * 26 25 24 28 28 N 1.34429 * 108.19801 * 359.97438 * 27 26 25 29 29 H 0.97002 * 126.77543 * 179.97438 * 28 27 26 30 30 N 1.31155 * 125.59898 * 179.71876 * 25 24 23 31 31 H 1.09001 * 109.47068 * 270.17538 * 1 2 3 32 32 H 1.09000 * 109.46978 * 30.16791 * 1 2 3 33 33 H 1.09003 * 109.47493 * 150.17261 * 1 2 3 34 34 H 0.96999 * 120.00378 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.46208 * 298.70627 * 10 8 7 36 36 H 1.09000 * 109.45493 * 58.65775 * 10 8 7 37 37 H 1.09006 * 109.47246 * 301.36656 * 11 10 8 38 38 H 1.08998 * 109.52889 * 181.30394 * 11 10 8 39 39 H 1.09003 * 109.58701 * 185.59453 * 12 11 10 40 40 H 1.09000 * 109.58269 * 65.17445 * 12 11 10 41 41 H 0.96996 * 120.00316 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.58371 * 186.60591 * 22 13 12 43 43 H 1.08999 * 109.69741 * 66.24765 * 22 13 12 44 44 H 1.07999 * 125.89823 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2801 1.0559 0.0000 4 6 3.5531 0.6196 -0.0063 5 6 4.7631 1.4688 -0.0137 6 8 5.8654 0.9561 -0.0185 7 7 4.6443 2.8113 -0.0152 8 6 5.8434 3.6528 -0.0231 9 1 6.6279 3.1738 0.5627 10 6 5.5135 5.0180 0.5847 11 6 6.7732 5.8867 0.6062 12 6 7.2658 6.1017 -0.8283 13 7 7.4473 4.7913 -1.4674 14 6 8.6393 4.4606 -2.0547 15 1 9.5575 4.9057 -1.7008 16 6 8.6675 3.5533 -3.1048 17 7 7.5619 3.2711 -3.7608 18 14 10.2749 2.7325 -3.5872 19 1 11.3635 3.2171 -2.7009 20 1 10.1404 1.2603 -3.4472 21 1 10.5985 3.0682 -4.9970 22 6 6.3254 3.8425 -1.4648 23 7 3.5309 -0.6959 -0.0041 24 7 2.3037 -1.0885 0.0026 25 6 1.8702 -2.4207 0.0074 26 7 2.6627 -3.4966 0.0062 27 6 1.9345 -4.5832 0.0174 28 7 0.6400 -4.2209 0.0267 29 1 -0.1286 -4.8126 0.0356 30 7 0.6199 -2.8167 0.0195 31 1 -0.3633 0.0031 1.0277 32 1 -0.3633 0.8885 -0.5164 33 1 -0.3634 -0.8915 -0.5111 34 1 3.7648 3.2203 -0.0118 35 1 4.7461 5.5069 -0.0155 36 1 5.1472 4.8834 1.6024 37 1 7.5492 5.3872 1.1862 38 1 6.5434 6.8506 1.0603 39 1 8.2162 6.6352 -0.8123 40 1 6.5287 6.6807 -1.3848 41 1 7.5816 2.6369 -4.4944 42 1 6.6554 2.8854 -1.8687 43 1 5.5110 4.2349 -2.0737 44 1 2.3087 -5.5963 0.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008118661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:49 Heat of formation + Delta-G solvation = 162.604922 kcal Electronic energy + Delta-G solvation = -29978.398648 eV Core-core repulsion = 25777.240922 eV Total energy + Delta-G solvation = -4201.157726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.04453 -43.41138 -40.95032 -38.95573 -36.20071 -35.86205 -34.59767 -34.44735 -33.54668 -32.11261 -31.83737 -30.59611 -29.31701 -27.25953 -26.61273 -24.95996 -23.97247 -23.59368 -23.00995 -21.78610 -21.53730 -20.92556 -19.83512 -19.15177 -18.73949 -18.46362 -17.95499 -17.24977 -16.85365 -16.62802 -16.04872 -15.91496 -15.84512 -15.48054 -15.26002 -15.09799 -14.75087 -14.16608 -14.15614 -14.01765 -14.00063 -13.55936 -13.49746 -12.95757 -12.89839 -12.71241 -12.66943 -12.50786 -12.27138 -12.04209 -11.90067 -11.77637 -11.63287 -11.52512 -11.50147 -11.31890 -11.26776 -11.17727 -10.57071 -10.51088 -10.20175 -8.69904 -7.89013 -5.34541 -0.50832 0.20332 0.41902 0.76828 1.39749 1.45709 1.53711 1.62760 1.66021 1.79755 2.07876 2.48785 2.63529 2.86609 3.14934 3.28087 3.56296 3.77217 3.80422 3.94727 4.14733 4.26781 4.31134 4.48347 4.51790 4.53986 4.58959 4.59756 4.66604 4.84154 4.89366 4.93092 4.99684 5.11745 5.17715 5.22031 5.30152 5.35539 5.42987 5.54292 5.62550 5.74886 5.98183 6.24896 6.37793 6.52346 6.80899 7.01293 7.12342 7.85005 8.34319 9.15916 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.002713 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.247602 B =10318.867205 C =11782.405521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.254 3.746 3 N -0.477 5.477 4 C 0.153 3.847 5 C 0.607 3.393 6 O -0.556 6.556 7 N -0.679 5.679 8 C 0.131 3.869 9 H 0.059 0.941 10 C -0.106 4.106 11 C -0.120 4.120 12 C 0.135 3.865 13 N -0.609 5.609 14 C -0.260 4.260 15 H 0.072 0.928 16 C -0.054 4.054 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.260 1.260 20 H -0.301 1.301 21 H -0.285 1.285 22 C 0.177 3.823 23 N -0.262 5.262 24 N -0.236 5.236 25 C 0.425 3.575 26 N -0.579 5.579 27 C 0.316 3.684 28 N -0.441 5.441 29 H 0.475 0.525 30 N -0.288 5.288 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.419 0.581 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.245 0.755 42 H 0.042 0.958 43 H 0.002 0.998 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.178 -13.709 12.056 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 N -0.204 5.204 4 C -0.128 4.128 5 C 0.389 3.611 6 O -0.431 6.431 7 N -0.331 5.331 8 C 0.025 3.975 9 H 0.077 0.923 10 C -0.144 4.144 11 C -0.160 4.160 12 C 0.010 3.990 13 N -0.333 5.333 14 C -0.390 4.390 15 H 0.090 0.910 16 C -0.250 4.250 17 N -0.578 5.578 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.229 1.229 21 H -0.212 1.212 22 C 0.050 3.950 23 N -0.099 5.099 24 N -0.029 5.029 25 C 0.057 3.943 26 N -0.310 5.310 27 C 0.019 3.981 28 N -0.164 5.164 29 H 0.328 0.672 30 N -0.125 5.125 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.257 0.743 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.310 0.690 Dipole moment (debyes) X Y Z Total from point charges -23.071 -13.641 11.932 29.338 hybrid contribution 0.293 -1.233 -0.886 1.546 sum -22.778 -14.874 11.045 29.361 Atomic orbital electron populations 1.20805 0.78237 1.06883 1.06776 1.26265 0.99499 0.79440 0.96882 1.71352 0.99209 1.27932 1.21918 1.23749 0.93495 0.88546 1.07032 1.16498 0.84816 0.82707 0.77085 1.90850 1.27231 1.74303 1.50734 1.45577 1.11396 1.03697 1.72392 1.21738 0.85580 0.91416 0.98736 0.92254 1.21663 0.99080 0.92273 1.01425 1.21908 0.96554 1.00395 0.97096 1.21214 0.98971 0.86283 0.92548 1.44254 1.11402 1.12325 1.65287 1.19547 0.86277 1.23541 1.09651 0.91035 1.25823 0.99887 1.02811 0.96439 1.70181 1.28495 1.36863 1.22222 0.85293 0.80368 0.77589 0.77814 1.18374 1.22888 1.21157 1.20776 0.88650 0.94101 0.91465 1.74610 1.01547 1.14098 1.19636 1.43245 1.03695 1.04370 1.51565 1.19511 0.88445 0.83120 1.03243 1.70296 1.36540 0.97307 1.26859 1.27243 0.79721 1.00537 0.90618 1.47994 1.10744 1.02778 1.54897 0.67173 1.78101 1.13935 0.92422 1.28037 0.86390 0.86160 0.87577 0.74331 0.90438 0.89357 0.92795 0.88030 0.92322 0.95842 0.94565 0.93970 0.97950 0.69031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 9.84 71.24 0.70 -0.22 16 2 C 0.25 6.71 7.94 138.07 1.10 7.81 16 3 N -0.48 -15.30 11.09 -180.72 -2.00 -17.30 16 4 C 0.15 6.11 7.96 137.09 1.09 7.20 16 5 C 0.61 27.35 7.80 86.78 0.68 28.03 16 6 O -0.56 -30.41 16.75 -3.91 -0.07 -30.47 16 7 N -0.68 -26.36 5.08 -445.05 -2.26 -28.62 16 8 C 0.13 5.55 2.60 45.07 0.12 5.67 16 9 H 0.06 2.85 7.58 -2.39 -0.02 2.84 16 10 C -0.11 -3.36 5.36 30.62 0.16 -3.19 16 11 C -0.12 -3.86 6.08 30.67 0.19 -3.68 16 12 C 0.13 5.60 6.52 86.36 0.56 6.16 16 13 N -0.61 -32.70 3.00 -699.09 -2.09 -34.79 16 14 C -0.26 -15.40 9.58 84.03 0.81 -14.60 16 15 H 0.07 4.07 7.89 -2.91 -0.02 4.05 16 16 C -0.05 -3.33 4.91 84.86 0.42 -2.91 16 17 N -0.93 -60.63 11.19 21.65 0.24 -60.38 16 18 Si 0.96 49.66 29.59 68.60 2.03 51.69 16 19 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 21 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 22 C 0.18 9.49 4.89 86.36 0.42 9.91 16 23 N -0.26 -10.64 12.03 -52.42 -0.63 -11.27 16 24 N -0.24 -7.43 3.52 -188.46 -0.66 -8.09 16 25 C 0.43 10.61 8.74 260.69 2.28 12.89 16 26 N -0.58 -13.40 11.20 -200.94 -2.25 -15.65 16 27 C 0.32 2.33 13.12 180.37 2.37 4.69 16 28 N -0.44 -2.18 7.44 -60.51 -0.45 -2.63 16 29 H 0.47 -2.44 8.96 -213.10 -1.91 -4.35 16 30 N -0.29 -4.48 10.41 -58.74 -0.61 -5.09 16 31 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.26 6.33 -2.39 -0.02 1.25 16 34 H 0.42 13.38 8.31 -92.71 -0.77 12.61 16 35 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.25 15.62 8.31 -92.71 -0.77 14.84 16 42 H 0.04 2.71 6.04 -2.39 -0.01 2.69 16 43 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.29 -1.71 8.06 -2.91 -0.02 -1.73 16 Total: -1.00 -99.58 372.47 0.53 -99.05 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -1.60 Total: 5.79 kcal Atomic # 6 Polarization: 46.87 SS G_CDS: 10.88 Total: 57.76 kcal Atomic # 7 Polarization: -173.10 SS G_CDS: -10.72 Total: -183.82 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.03 Total: 51.69 kcal Total: -99.58 0.53 -99.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008118661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.659 kcal (2) G-P(sol) polarization free energy of solvation -99.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds