Wall clock time and date at job start Wed Apr 1 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30868 * 126.20672 * 2 1 4 4 C 1.34568 * 107.28721 * 180.15814 * 3 2 1 5 5 C 1.47835 * 126.02041 * 179.83309 * 4 3 2 6 6 O 1.21565 * 120.00314 * 179.68534 * 5 4 3 7 7 N 1.34773 * 120.00137 * 359.69057 * 5 4 3 8 8 C 1.46497 * 120.00083 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47269 * 185.65581 * 8 7 5 10 10 H 1.09000 * 109.99510 * 304.84298 * 9 8 7 11 11 C 1.54326 * 109.88078 * 65.93746 * 9 8 7 12 12 C 1.55444 * 102.96840 * 141.61473 * 11 9 8 13 13 C 1.54917 * 101.44837 * 324.51541 * 12 11 9 14 14 N 1.47017 * 109.88305 * 183.74839 * 9 8 7 15 15 C 1.36936 * 125.64982 * 61.62433 * 14 9 8 16 16 H 1.07999 * 120.00294 * 14.68119 * 15 14 9 17 17 C 1.38820 * 119.99597 * 194.68661 * 15 14 9 18 18 N 1.31615 * 120.00396 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99451 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47193 * 89.99960 * 19 17 15 21 21 H 1.48505 * 109.46755 * 209.99984 * 19 17 15 22 22 H 1.48499 * 109.47196 * 329.99669 * 19 17 15 23 23 N 1.31562 * 107.95750 * 359.56565 * 4 3 2 24 24 N 1.28853 * 108.70714 * 0.27021 * 23 4 3 25 25 C 1.40095 * 125.76898 * 180.02562 * 24 23 4 26 26 N 1.33631 * 125.59675 * 179.66317 * 25 24 23 27 27 C 1.30804 * 109.79505 * 179.85356 * 26 25 24 28 28 N 1.34433 * 108.19260 * 0.40269 * 27 26 25 29 29 H 0.96997 * 126.77395 * 179.78371 * 28 27 26 30 30 N 1.31153 * 125.60114 * 359.97040 * 25 24 23 31 31 H 1.08997 * 109.46990 * 270.31597 * 1 2 3 32 32 H 1.08996 * 109.47196 * 30.31632 * 1 2 3 33 33 H 1.09004 * 109.47239 * 150.32023 * 1 2 3 34 34 H 0.97008 * 119.99940 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47158 * 65.65709 * 8 7 5 36 36 H 1.08996 * 109.47264 * 305.65474 * 8 7 5 37 37 H 1.08998 * 110.71800 * 259.97694 * 11 9 8 38 38 H 1.08998 * 110.72235 * 23.24671 * 11 9 8 39 39 H 1.08998 * 111.11882 * 206.46712 * 12 11 9 40 40 H 1.08996 * 111.01683 * 82.51954 * 12 11 9 41 41 H 1.08998 * 110.36802 * 278.11252 * 13 12 11 42 42 H 1.09007 * 110.36326 * 155.89781 * 13 12 11 43 43 H 0.97001 * 120.00134 * 179.97438 * 18 17 15 44 44 H 1.07993 * 125.90070 * 180.15984 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2800 1.0560 0.0000 4 6 3.5530 0.6196 -0.0035 5 6 4.7631 1.4689 -0.0083 6 8 5.8654 0.9563 -0.0055 7 7 4.6443 2.8113 -0.0158 8 6 5.8434 3.6528 -0.0200 9 6 5.4362 5.1216 0.1140 10 1 4.7266 5.3847 -0.6705 11 6 4.8017 5.3661 1.4993 12 6 5.3469 6.7684 1.8902 13 6 6.7726 6.7233 1.2859 14 7 6.6257 5.9807 0.0209 15 6 7.4592 6.0752 -1.0614 16 1 7.1487 5.6819 -2.0182 17 6 8.7034 6.6764 -0.9288 18 7 9.0817 7.1561 0.2370 19 14 9.8407 6.8046 -2.4051 20 1 9.5782 8.0776 -3.1232 21 1 11.2527 6.7773 -1.9459 22 1 9.5955 5.6607 -3.3197 23 7 3.5310 -0.6958 0.0038 24 7 2.3037 -1.0885 0.0060 25 6 1.8703 -2.4207 0.0140 26 7 0.5964 -2.8242 0.0226 27 6 0.5457 -4.1312 0.0253 28 7 1.8056 -4.6001 0.0273 29 1 2.0788 -5.5308 0.0324 30 7 2.6482 -3.4767 0.0200 31 1 -0.3633 0.0057 1.0276 32 1 -0.3633 0.8871 -0.5187 33 1 -0.3634 -0.8929 -0.5089 34 1 3.7646 3.2204 -0.0184 35 1 6.3845 3.5097 -0.9553 36 1 6.4846 3.3759 0.8168 37 1 3.7141 5.3816 1.4280 38 1 5.1317 4.6115 2.2133 39 1 5.3851 6.8870 2.9730 40 1 4.7535 7.5599 1.4326 41 1 7.4527 6.1987 1.9570 42 1 7.1349 7.7332 1.0931 43 1 9.9512 7.5758 0.3297 44 1 -0.3530 -4.7301 0.0295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028061457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:08 Heat of formation + Delta-G solvation = 166.358390 kcal Electronic energy + Delta-G solvation = -29371.701871 eV Core-core repulsion = 25170.706908 eV Total energy + Delta-G solvation = -4200.994964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.02526 -43.37703 -40.83921 -39.25332 -36.20190 -35.83732 -34.60771 -34.39338 -33.22439 -32.20727 -31.43196 -30.50470 -29.19771 -27.35245 -26.50902 -25.14059 -24.20518 -23.58912 -22.09636 -21.74687 -21.52400 -21.08922 -19.87959 -19.16614 -18.53834 -18.45404 -18.04901 -17.41043 -16.76258 -16.67555 -16.26175 -16.08951 -15.89398 -15.66649 -15.23155 -14.87052 -14.70922 -13.98193 -13.95876 -13.90223 -13.64789 -13.43938 -13.41795 -13.03021 -12.99662 -12.86754 -12.67238 -12.63548 -12.03088 -11.92680 -11.88157 -11.73863 -11.59004 -11.47534 -11.46411 -11.39984 -11.38440 -11.19093 -10.66588 -10.51705 -10.18881 -8.85479 -7.87525 -5.25126 -0.46222 0.23531 0.44178 0.82934 1.44298 1.47084 1.54670 1.56048 1.65626 1.89906 2.03276 2.48892 2.69017 2.82076 3.26686 3.32274 3.63291 3.74634 3.81272 3.95584 3.98732 4.27734 4.37797 4.44658 4.54140 4.58622 4.65006 4.69322 4.72787 4.76245 4.91875 4.98586 5.01157 5.09853 5.12750 5.17286 5.27774 5.48675 5.49207 5.54879 5.68423 5.80179 6.00378 6.20790 6.24703 6.47949 6.80489 6.95234 7.10126 7.76630 8.42816 9.23357 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.002113 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.104050 B =13250.082169 C =14099.669516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.266 3.734 3 N -0.480 5.480 4 C 0.156 3.844 5 C 0.609 3.391 6 O -0.561 6.561 7 N -0.677 5.677 8 C 0.128 3.872 9 C 0.149 3.851 10 H 0.056 0.944 11 C -0.115 4.115 12 C -0.132 4.132 13 C 0.173 3.827 14 N -0.609 5.609 15 C -0.240 4.240 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.972 3.028 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.274 1.274 23 N -0.273 5.273 24 N -0.236 5.236 25 C 0.426 3.574 26 N -0.549 5.549 27 C 0.323 3.677 28 N -0.452 5.452 29 H 0.471 0.529 30 N -0.322 5.322 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.422 0.578 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.072 0.928 41 H -0.008 1.008 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.474 -24.114 1.805 38.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.008 4.008 3 N -0.207 5.207 4 C -0.125 4.125 5 C 0.390 3.610 6 O -0.437 6.437 7 N -0.329 5.329 8 C 0.002 3.998 9 C 0.042 3.958 10 H 0.074 0.926 11 C -0.153 4.153 12 C -0.170 4.170 13 C 0.048 3.952 14 N -0.333 5.333 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.801 3.199 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.199 1.199 23 N -0.110 5.110 24 N -0.029 5.029 25 C 0.057 3.943 26 N -0.282 5.282 27 C 0.027 3.973 28 N -0.174 5.174 29 H 0.323 0.677 30 N -0.157 5.157 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.010 0.990 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges -27.450 -24.095 1.768 36.568 hybrid contribution 1.360 -0.500 -0.673 1.598 sum -26.090 -24.596 1.095 35.872 Atomic orbital electron populations 1.20836 0.78121 1.07157 1.06613 1.26289 0.99557 0.79151 0.95842 1.71407 0.99180 1.27952 1.22160 1.23640 0.93503 0.88380 1.06960 1.16479 0.84853 0.82437 0.77214 1.90829 1.27209 1.74382 1.51260 1.45519 1.11625 1.03689 1.72103 1.21946 0.85915 0.91463 1.00464 1.21336 0.89659 0.86893 0.97938 0.92603 1.22662 1.01087 0.97022 0.94492 1.22922 0.96310 0.97142 1.00654 1.21287 0.93005 0.95306 0.85596 1.44746 1.28924 1.45632 1.13978 1.19319 0.95250 1.33475 0.88856 0.90435 1.25697 0.98549 1.01703 0.99449 1.70139 1.20715 1.44501 1.23904 0.85175 0.77907 0.78039 0.78814 1.20726 1.22211 1.19904 1.74549 1.01561 1.14370 1.20472 1.43166 1.03640 1.04375 1.51693 1.19508 0.89287 0.82314 1.03168 1.70210 1.16218 1.13497 1.28276 1.27503 0.91532 0.88560 0.89744 1.47966 1.04782 1.09263 1.55367 0.67746 1.78395 1.16826 0.93440 1.27040 0.86899 0.86677 0.86563 0.73997 0.93791 0.93560 0.87770 0.91857 0.89879 0.90881 0.98994 0.94349 0.94304 0.67915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 9.84 71.24 0.70 -0.05 16 2 C 0.27 6.10 7.94 138.07 1.10 7.20 16 3 N -0.48 -13.47 11.09 -180.71 -2.00 -15.48 16 4 C 0.16 5.48 7.96 137.09 1.09 6.57 16 5 C 0.61 24.07 7.83 86.78 0.68 24.75 16 6 O -0.56 -27.02 17.08 -3.92 -0.07 -27.09 16 7 N -0.68 -23.60 5.34 -465.98 -2.49 -26.09 16 8 C 0.13 5.34 5.09 86.38 0.44 5.78 16 9 C 0.15 6.01 3.20 45.34 0.15 6.15 16 10 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 11 C -0.11 -3.74 6.18 31.89 0.20 -3.54 16 12 C -0.13 -4.72 7.11 32.09 0.23 -4.49 16 13 C 0.17 8.61 5.41 86.86 0.47 9.08 16 14 N -0.61 -31.37 3.13 -668.22 -2.09 -33.46 16 15 C -0.24 -13.68 9.73 84.04 0.82 -12.86 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 18 N -0.94 -58.11 10.57 21.65 0.23 -57.88 16 19 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 23 N -0.27 -9.74 12.02 -52.42 -0.63 -10.37 16 24 N -0.24 -6.50 3.52 -188.46 -0.66 -7.16 16 25 C 0.43 9.14 8.73 260.69 2.28 11.41 16 26 N -0.55 -6.14 8.79 -200.95 -1.77 -7.91 16 27 C 0.32 0.17 13.12 180.37 2.37 2.54 16 28 N -0.45 -2.42 7.44 -60.51 -0.45 -2.87 16 29 H 0.47 -1.40 8.96 -213.11 -1.91 -3.31 16 30 N -0.32 -6.73 12.81 -58.74 -0.75 -7.48 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 1.04 6.30 -2.39 -0.02 1.02 16 34 H 0.42 12.05 8.10 -92.70 -0.75 11.30 16 35 H 0.04 2.08 7.88 -2.39 -0.02 2.06 16 36 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 37 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.06 2.09 7.79 -2.39 -0.02 2.08 16 39 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 41 H -0.01 -0.45 8.06 -2.39 -0.02 -0.46 16 42 H 0.04 2.14 6.93 -2.38 -0.02 2.12 16 43 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.31 -4.38 8.06 -2.91 -0.02 -4.41 16 Total: -1.00 -93.94 375.36 0.74 -93.21 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -1.58 Total: 3.46 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 10.97 Total: 49.50 kcal Atomic # 7 Polarization: -158.08 SS G_CDS: -10.62 Total: -168.69 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.07 Total: -27.09 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -93.94 0.74 -93.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028061457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.565 kcal (2) G-P(sol) polarization free energy of solvation -93.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds