Wall clock time and date at job start Wed Apr 1 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35964 * 120.56764 * 2 1 4 4 C 1.40836 * 119.33919 * 180.02562 * 3 2 1 5 5 O 1.21861 * 119.75852 * 179.97438 * 4 3 2 6 6 O 1.34383 * 120.48635 * 359.73126 * 4 3 2 7 7 C 1.33727 * 121.20572 * 0.55433 * 6 4 3 8 8 C 1.50702 * 119.69210 * 179.71376 * 7 6 4 9 9 C 1.37586 * 120.61773 * 359.44692 * 7 6 4 10 10 C 1.47527 * 120.25627 * 180.29426 * 9 7 6 11 11 O 1.21595 * 120.00290 * 83.06477 * 10 9 7 12 12 N 1.34775 * 119.99680 * 263.06408 * 10 9 7 13 13 C 1.46508 * 119.99799 * 184.53988 * 12 10 9 14 14 H 1.09003 * 109.32220 * 48.62981 * 13 12 10 15 15 C 1.53036 * 109.32329 * 289.16667 * 13 12 10 16 16 C 1.53970 * 108.82546 * 295.14318 * 15 13 12 17 17 H 1.09008 * 112.99534 * 168.09347 * 16 15 13 18 18 C 1.55422 * 106.41477 * 293.82063 * 16 15 13 19 19 C 1.55176 * 100.35190 * 73.38008 * 18 16 15 20 20 H 1.08997 * 113.04673 * 162.98949 * 19 18 16 21 21 C 1.52985 * 109.32608 * 168.27930 * 13 12 10 22 22 N 1.47785 * 104.25564 * 40.54895 * 19 18 16 23 23 C 1.36935 * 125.85975 * 153.53785 * 22 19 18 24 24 H 1.08001 * 119.99271 * 11.57268 * 23 22 19 25 25 C 1.38804 * 120.00199 * 191.57282 * 23 22 19 26 26 N 1.31620 * 120.00251 * 9.04945 * 25 23 22 27 27 Si 1.86807 * 119.99900 * 189.04946 * 25 23 22 28 28 H 1.48501 * 109.47093 * 94.85709 * 27 25 23 29 29 H 1.48499 * 109.47036 * 214.85207 * 27 25 23 30 30 H 1.48496 * 109.46950 * 334.85631 * 27 25 23 31 31 C 1.47086 * 108.28567 * 333.54209 * 22 19 18 32 32 H 1.09004 * 109.47143 * 272.61862 * 1 2 3 33 33 H 1.09000 * 109.47753 * 32.61672 * 1 2 3 34 34 H 1.09004 * 109.47362 * 152.62099 * 1 2 3 35 35 H 1.08000 * 120.33249 * 0.05007 * 3 2 1 36 36 H 1.08998 * 109.47327 * 269.73614 * 8 7 6 37 37 H 1.09002 * 109.46960 * 29.73277 * 8 7 6 38 38 H 1.08996 * 109.47099 * 149.73074 * 8 7 6 39 39 H 0.96994 * 120.00531 * 4.54242 * 12 10 9 40 40 H 1.08997 * 109.57741 * 54.94459 * 15 13 12 41 41 H 1.08996 * 109.57850 * 175.33870 * 15 13 12 42 42 H 1.09004 * 111.23825 * 315.60585 * 18 16 15 43 43 H 1.09002 * 111.23720 * 191.15326 * 18 16 15 44 44 H 1.08997 * 109.53108 * 185.06046 * 21 13 12 45 45 H 1.09007 * 109.52850 * 305.28714 * 21 13 12 46 46 H 0.97000 * 119.99949 * 180.02562 * 26 25 23 47 47 H 1.09005 * 109.97611 * 120.45923 * 31 22 19 48 48 H 1.09003 * 109.97313 * 241.73662 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6064 1.1405 -0.0005 5 8 4.2338 2.1852 -0.0010 6 8 4.2632 -0.0319 0.0044 7 6 3.6040 -1.1954 -0.0012 8 6 4.3751 -2.4902 -0.0019 9 6 2.2284 -1.2214 -0.0007 10 6 1.5093 -2.5095 -0.0003 11 8 1.3243 -3.1023 1.0451 12 7 1.0574 -3.0293 -1.1588 13 6 0.2577 -4.2568 -1.1483 14 1 -0.5346 -4.1647 -0.4053 15 6 1.1541 -5.4421 -0.7830 16 6 2.2023 -5.6334 -1.8945 17 1 3.0008 -6.3201 -1.6133 18 6 1.4200 -6.0642 -3.1665 19 6 0.7550 -4.7169 -3.5545 20 1 0.3890 -4.7017 -4.5811 21 6 -0.3653 -4.4670 -2.5296 22 7 1.8089 -3.7088 -3.3158 23 6 1.9201 -2.4994 -3.9484 24 1 1.1055 -2.1296 -4.5534 25 6 3.0798 -1.7489 -3.8120 26 7 4.1367 -2.2711 -3.2267 27 14 3.1404 0.0024 -4.4593 28 1 2.8185 0.9478 -3.3602 29 1 4.5015 0.2915 -4.9780 30 1 2.1496 0.1601 -5.5540 31 6 2.7179 -4.2272 -2.2822 32 1 -0.3633 0.0470 1.0266 33 1 -0.3634 0.8656 -0.5539 34 1 -0.3634 -0.9126 -0.4726 35 1 1.6732 2.1144 0.0008 36 1 4.5606 -2.8020 -1.0298 37 1 5.3259 -2.3472 0.5116 38 1 3.7966 -3.2579 0.5119 39 1 1.2616 -2.5908 -1.9995 40 1 1.6573 -5.2417 0.1629 41 1 0.5486 -6.3439 -0.6929 42 1 0.6713 -6.8210 -2.9322 43 1 2.0967 -6.4099 -3.9480 44 1 -1.0322 -5.3287 -2.5012 45 1 -0.9284 -3.5782 -2.8145 46 1 4.9470 -1.7465 -3.1311 47 1 3.7308 -4.2981 -2.6787 48 1 2.7036 -3.5721 -1.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047110757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:34 Heat of formation + Delta-G solvation = -5.935955 kcal Electronic energy + Delta-G solvation = -34491.359207 eV Core-core repulsion = 30321.847841 eV Total energy + Delta-G solvation = -4169.511366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.77220 -40.81419 -38.32989 -37.37653 -35.58008 -33.88071 -33.28751 -32.31972 -30.90927 -30.45310 -28.67210 -28.28207 -27.25795 -25.37025 -24.05030 -23.32841 -21.98635 -21.71535 -20.40533 -19.77901 -18.92085 -17.98477 -17.89224 -17.02368 -16.54415 -16.26798 -15.74246 -15.24976 -14.74144 -14.64056 -14.14658 -13.72046 -13.70207 -13.57882 -13.40175 -13.25878 -12.99968 -12.84715 -12.63443 -12.40436 -12.29419 -12.19279 -11.96555 -11.86527 -11.83541 -11.76384 -11.56129 -11.47159 -11.03775 -10.97348 -10.76613 -10.23748 -10.19645 -9.97447 -9.95009 -9.87042 -9.73942 -9.55455 -9.27336 -8.94369 -7.95984 -7.71065 -7.05165 -6.02552 -3.46232 0.79791 1.75755 2.60260 3.09334 3.22513 3.29017 3.36185 3.49478 3.92315 4.22871 4.52253 4.58881 4.99275 5.07077 5.08994 5.14794 5.30590 5.32339 5.36228 5.47474 5.53362 5.58158 5.69390 5.69908 5.78456 5.80142 5.87596 5.93002 5.98736 6.00169 6.05140 6.16433 6.17194 6.27639 6.34173 6.37077 6.49664 6.54628 6.59154 6.67910 6.77778 6.81696 7.24023 7.28856 7.44870 7.45597 7.60814 7.80492 7.97010 8.40751 8.86371 9.00968 9.47081 10.14623 11.00046 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.006439 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.408044 B = 4347.144441 C = 5241.129712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.068 3.932 3 C -0.297 4.297 4 C 0.500 3.500 5 O -0.490 6.490 6 O -0.256 6.256 7 C 0.221 3.779 8 C -0.139 4.139 9 C -0.263 4.263 10 C 0.569 3.431 11 O -0.562 6.562 12 N -0.682 5.682 13 C 0.159 3.841 14 H 0.063 0.937 15 C -0.125 4.125 16 C -0.119 4.119 17 H 0.077 0.923 18 C -0.126 4.126 19 C 0.148 3.852 20 H 0.068 0.932 21 C -0.141 4.141 22 N -0.590 5.590 23 C -0.254 4.254 24 H 0.081 0.919 25 C 0.011 3.989 26 N -0.901 5.901 27 Si 0.889 3.111 28 H -0.282 1.282 29 H -0.286 1.286 30 H -0.276 1.276 31 C 0.127 3.873 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.439 0.561 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.257 0.743 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 -4.571 4.175 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 C -0.317 4.317 4 C 0.354 3.646 5 O -0.382 6.382 6 O -0.164 6.164 7 C 0.171 3.829 8 C -0.194 4.194 9 C -0.268 4.268 10 C 0.354 3.646 11 O -0.443 6.443 12 N -0.349 5.349 13 C 0.054 3.946 14 H 0.081 0.919 15 C -0.164 4.164 16 C -0.138 4.138 17 H 0.095 0.905 18 C -0.164 4.164 19 C 0.040 3.960 20 H 0.086 0.914 21 C -0.181 4.181 22 N -0.317 5.317 23 C -0.382 4.382 24 H 0.099 0.901 25 C -0.188 4.188 26 N -0.546 5.546 27 Si 0.719 3.281 28 H -0.209 1.209 29 H -0.212 1.212 30 H -0.201 1.201 31 C 0.003 3.997 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.297 0.703 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.386 -4.240 4.763 9.025 hybrid contribution 0.050 1.252 -0.881 1.532 sum -6.335 -2.988 3.882 8.008 Atomic orbital electron populations 1.21022 0.89656 1.04287 1.03475 1.20215 0.97128 0.90960 0.85090 1.22045 0.92778 0.99946 1.16882 1.19215 0.88449 0.80828 0.76118 1.90942 1.71082 1.26018 1.50145 1.83364 1.44771 1.14729 1.73508 1.22814 0.90535 0.85116 0.84451 1.21606 1.00027 0.89115 1.08682 1.19704 0.92712 0.95527 1.18826 1.17500 0.79266 0.83388 0.84488 1.90712 1.59327 1.61745 1.32496 1.47897 1.50240 1.25548 1.11242 1.20681 0.92471 0.84773 0.96719 0.91922 1.22108 0.97895 0.97134 0.99249 1.22796 0.96835 0.99690 0.94474 0.90467 1.22948 0.98901 0.96841 0.97713 1.21657 0.89658 0.88861 0.95782 0.91400 1.22525 0.98922 1.01166 0.95482 1.45002 1.28033 1.15763 1.42874 1.19106 0.99869 0.92298 1.26878 0.90088 1.24794 0.95021 0.98673 1.00313 1.69816 1.02285 1.35535 1.46999 0.86432 0.77782 0.84659 0.79271 1.20897 1.21170 1.20131 1.22403 0.94676 0.89825 0.92819 0.89440 0.90019 0.90249 0.82573 0.83362 0.89862 0.88474 0.70321 0.91047 0.92262 0.92139 0.92004 0.91592 0.91983 0.93281 0.91833 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.71 36.00 0.35 -1.39 16 2 C 0.07 1.16 5.93 -104.06 -0.62 0.54 16 3 C -0.30 -5.26 9.65 -39.42 -0.38 -5.64 16 4 C 0.50 10.29 7.93 31.71 0.25 10.54 16 5 O -0.49 -11.11 17.93 -19.60 -0.35 -11.47 16 6 O -0.26 -5.16 9.81 -17.64 -0.17 -5.34 16 7 C 0.22 4.20 7.03 -34.55 -0.24 3.96 16 8 C -0.14 -2.36 8.61 36.01 0.31 -2.06 16 9 C -0.26 -4.95 5.63 -104.97 -0.59 -5.55 16 10 C 0.57 10.67 2.98 -12.47 -0.04 10.64 16 11 O -0.56 -11.36 15.46 5.28 0.08 -11.27 16 12 N -0.68 -12.36 2.56 -54.83 -0.14 -12.50 16 13 C 0.16 2.55 2.72 -67.92 -0.18 2.37 16 14 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 15 C -0.13 -1.95 5.16 -26.21 -0.14 -2.08 16 16 C -0.12 -1.95 4.33 -87.93 -0.38 -2.33 16 17 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 18 C -0.13 -1.92 6.18 -24.29 -0.15 -2.07 16 19 C 0.15 2.49 4.30 -65.62 -0.28 2.21 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C -0.14 -2.08 5.43 -26.28 -0.14 -2.22 16 22 N -0.59 -11.94 1.77 -161.37 -0.28 -12.22 16 23 C -0.25 -5.78 8.41 -15.06 -0.13 -5.90 16 24 H 0.08 1.84 7.84 -52.49 -0.41 1.43 16 25 C 0.01 0.26 5.42 -17.43 -0.09 0.17 16 26 N -0.90 -21.49 8.78 55.49 0.49 -21.00 16 27 Si 0.89 20.23 29.56 -169.99 -5.03 15.21 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 31 C 0.13 2.49 3.53 -2.83 -0.01 2.48 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.08 1.14 6.93 -51.93 -0.36 0.78 16 35 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.15 2.82 5.03 -51.93 -0.26 2.56 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.62 6.64 -51.93 -0.35 1.28 16 39 H 0.44 8.73 3.82 -40.88 -0.16 8.57 16 40 H 0.07 1.22 6.75 -51.93 -0.35 0.87 16 41 H 0.06 0.80 7.97 -51.93 -0.41 0.38 16 42 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.81 8.00 -51.93 -0.42 0.40 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 47 H 0.06 1.45 6.58 -51.93 -0.34 1.11 16 48 H 0.07 1.33 1.96 -58.40 -0.11 1.21 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -27.11 360.80 -8.94 -36.05 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.51 Total: 13.43 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.46 Total: 3.69 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.06 Total: -45.73 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.44 Total: -28.07 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.11 -8.94 -36.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047110757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.112 kcal (2) G-P(sol) polarization free energy of solvation -27.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds