Wall clock time and date at job start Wed Apr 1 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35964 * 120.56764 * 2 1 4 4 C 1.40836 * 119.33919 * 180.02562 * 3 2 1 5 5 O 1.21861 * 119.75852 * 179.97438 * 4 3 2 6 6 O 1.34383 * 120.48635 * 359.73126 * 4 3 2 7 7 C 1.33727 * 121.20572 * 0.55433 * 6 4 3 8 8 C 1.50702 * 119.69210 * 179.71376 * 7 6 4 9 9 C 1.37586 * 120.61773 * 359.44692 * 7 6 4 10 10 C 1.47527 * 120.25627 * 180.29426 * 9 7 6 11 11 O 1.21595 * 120.00290 * 83.06477 * 10 9 7 12 12 N 1.34775 * 119.99680 * 263.06408 * 10 9 7 13 13 C 1.46508 * 119.99799 * 184.53988 * 12 10 9 14 14 H 1.09003 * 109.32220 * 48.62981 * 13 12 10 15 15 C 1.53036 * 109.32329 * 289.16667 * 13 12 10 16 16 C 1.53970 * 108.82546 * 295.14318 * 15 13 12 17 17 H 1.09008 * 112.99534 * 168.09347 * 16 15 13 18 18 C 1.55422 * 106.41477 * 293.82063 * 16 15 13 19 19 C 1.55176 * 100.35190 * 73.38008 * 18 16 15 20 20 H 1.08997 * 113.04673 * 162.98949 * 19 18 16 21 21 C 1.52985 * 109.32608 * 168.27930 * 13 12 10 22 22 N 1.47785 * 104.25564 * 40.54895 * 19 18 16 23 23 C 1.36935 * 125.85975 * 153.53785 * 22 19 18 24 24 H 1.08001 * 119.99271 * 11.57268 * 23 22 19 25 25 C 1.38804 * 120.00199 * 191.57282 * 23 22 19 26 26 N 1.31620 * 120.00251 * 9.04945 * 25 23 22 27 27 Si 1.86807 * 119.99900 * 189.04946 * 25 23 22 28 28 H 1.48501 * 109.47093 * 94.85709 * 27 25 23 29 29 H 1.48499 * 109.47036 * 214.85207 * 27 25 23 30 30 H 1.48496 * 109.46950 * 334.85631 * 27 25 23 31 31 C 1.47086 * 108.28567 * 333.54209 * 22 19 18 32 32 H 1.09004 * 109.47143 * 272.61862 * 1 2 3 33 33 H 1.09000 * 109.47753 * 32.61672 * 1 2 3 34 34 H 1.09004 * 109.47362 * 152.62099 * 1 2 3 35 35 H 1.08000 * 120.33249 * 0.05007 * 3 2 1 36 36 H 1.08998 * 109.47327 * 269.73614 * 8 7 6 37 37 H 1.09002 * 109.46960 * 29.73277 * 8 7 6 38 38 H 1.08996 * 109.47099 * 149.73074 * 8 7 6 39 39 H 0.96994 * 120.00531 * 4.54242 * 12 10 9 40 40 H 1.08997 * 109.57741 * 54.94459 * 15 13 12 41 41 H 1.08996 * 109.57850 * 175.33870 * 15 13 12 42 42 H 1.09004 * 111.23825 * 315.60585 * 18 16 15 43 43 H 1.09002 * 111.23720 * 191.15326 * 18 16 15 44 44 H 1.08997 * 109.53108 * 185.06046 * 21 13 12 45 45 H 1.09007 * 109.52850 * 305.28714 * 21 13 12 46 46 H 0.97000 * 119.99949 * 180.02562 * 26 25 23 47 47 H 1.09005 * 109.97611 * 120.45923 * 31 22 19 48 48 H 1.09003 * 109.97313 * 241.73662 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1707 0.0000 4 6 3.6064 1.1405 -0.0005 5 8 4.2338 2.1852 -0.0010 6 8 4.2632 -0.0319 0.0044 7 6 3.6040 -1.1954 -0.0012 8 6 4.3751 -2.4902 -0.0019 9 6 2.2284 -1.2214 -0.0007 10 6 1.5093 -2.5095 -0.0003 11 8 1.3243 -3.1023 1.0451 12 7 1.0574 -3.0293 -1.1588 13 6 0.2577 -4.2568 -1.1483 14 1 -0.5346 -4.1647 -0.4053 15 6 1.1541 -5.4421 -0.7830 16 6 2.2023 -5.6334 -1.8945 17 1 3.0008 -6.3201 -1.6133 18 6 1.4200 -6.0642 -3.1665 19 6 0.7550 -4.7169 -3.5545 20 1 0.3890 -4.7017 -4.5811 21 6 -0.3653 -4.4670 -2.5296 22 7 1.8089 -3.7088 -3.3158 23 6 1.9201 -2.4994 -3.9484 24 1 1.1055 -2.1296 -4.5534 25 6 3.0798 -1.7489 -3.8120 26 7 4.1367 -2.2711 -3.2267 27 14 3.1404 0.0024 -4.4593 28 1 2.8185 0.9478 -3.3602 29 1 4.5015 0.2915 -4.9780 30 1 2.1496 0.1601 -5.5540 31 6 2.7179 -4.2272 -2.2822 32 1 -0.3633 0.0470 1.0266 33 1 -0.3634 0.8656 -0.5539 34 1 -0.3634 -0.9126 -0.4726 35 1 1.6732 2.1144 0.0008 36 1 4.5606 -2.8020 -1.0298 37 1 5.3259 -2.3472 0.5116 38 1 3.7966 -3.2579 0.5119 39 1 1.2616 -2.5908 -1.9995 40 1 1.6573 -5.2417 0.1629 41 1 0.5486 -6.3439 -0.6929 42 1 0.6713 -6.8210 -2.9322 43 1 2.0967 -6.4099 -3.9480 44 1 -1.0322 -5.3287 -2.5012 45 1 -0.9284 -3.5782 -2.8145 46 1 4.9470 -1.7465 -3.1311 47 1 3.7308 -4.2981 -2.6787 48 1 2.7036 -3.5721 -1.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047110757.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:32 Heat of formation + Delta-G solvation = -17.964871 kcal Electronic energy + Delta-G solvation = -34491.880820 eV Core-core repulsion = 30321.847841 eV Total energy + Delta-G solvation = -4170.032979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.27828 -42.21869 -39.80045 -38.97743 -36.97935 -35.48616 -34.71087 -33.77511 -32.41233 -31.83408 -29.98329 -29.64413 -28.67658 -26.92387 -25.55314 -24.80750 -23.31235 -23.09164 -21.81707 -21.25679 -20.26683 -19.48148 -19.33958 -18.61645 -18.10845 -17.82255 -17.17133 -16.79253 -16.32339 -16.13554 -15.61500 -15.28186 -15.14932 -14.90920 -14.77945 -14.51127 -14.34118 -14.28009 -13.94079 -13.88655 -13.68811 -13.47723 -13.39619 -13.33453 -13.20239 -13.07361 -12.95605 -12.83939 -12.78417 -12.62459 -12.17977 -11.92823 -11.66145 -11.52562 -11.43229 -11.27807 -11.03508 -10.94105 -10.75338 -10.61085 -9.44743 -9.15049 -8.70623 -7.81772 -5.22161 -0.64394 0.23811 1.09398 1.35791 1.42834 1.49515 1.62590 2.01010 2.41780 2.52827 3.10723 3.25802 3.29899 3.62674 3.68677 3.85595 3.94283 4.03261 4.05961 4.14230 4.21529 4.40137 4.43416 4.50930 4.52477 4.54276 4.57781 4.62751 4.70092 4.73201 4.86167 4.95382 4.97684 5.02268 5.08254 5.14383 5.16146 5.22131 5.33135 5.40665 5.48232 5.57380 5.63759 5.85279 5.87255 5.92008 5.96919 6.24394 6.26795 6.91878 7.13873 7.49013 7.78259 8.44427 9.16996 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.006439 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.408044 B = 4347.144441 C = 5241.129712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.069 3.931 3 C -0.302 4.302 4 C 0.486 3.514 5 O -0.525 6.525 6 O -0.267 6.267 7 C 0.206 3.794 8 C -0.132 4.132 9 C -0.274 4.274 10 C 0.575 3.425 11 O -0.578 6.578 12 N -0.682 5.682 13 C 0.150 3.850 14 H 0.072 0.928 15 C -0.118 4.118 16 C -0.117 4.117 17 H 0.085 0.915 18 C -0.114 4.114 19 C 0.137 3.863 20 H 0.069 0.931 21 C -0.129 4.129 22 N -0.601 5.601 23 C -0.240 4.240 24 H 0.082 0.918 25 C -0.020 4.020 26 N -0.907 5.907 27 Si 0.915 3.085 28 H -0.297 1.297 29 H -0.307 1.307 30 H -0.265 1.265 31 C 0.126 3.874 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.183 0.817 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.432 0.568 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.244 0.756 47 H 0.024 0.976 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.899 -6.375 4.439 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.068 3.932 3 C -0.321 4.321 4 C 0.343 3.657 5 O -0.420 6.420 6 O -0.175 6.175 7 C 0.156 3.844 8 C -0.187 4.187 9 C -0.278 4.278 10 C 0.359 3.641 11 O -0.460 6.460 12 N -0.347 5.347 13 C 0.045 3.955 14 H 0.090 0.910 15 C -0.156 4.156 16 C -0.136 4.136 17 H 0.103 0.897 18 C -0.153 4.153 19 C 0.031 3.969 20 H 0.087 0.913 21 C -0.169 4.169 22 N -0.327 5.327 23 C -0.369 4.369 24 H 0.100 0.900 25 C -0.218 4.218 26 N -0.554 5.554 27 Si 0.746 3.254 28 H -0.225 1.225 29 H -0.235 1.235 30 H -0.189 1.189 31 C 0.002 3.998 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.200 0.800 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.288 0.712 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.043 0.957 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.408 -6.093 5.009 12.277 hybrid contribution 0.946 1.731 -0.991 2.208 sum -8.461 -4.362 4.018 10.333 Atomic orbital electron populations 1.21148 0.86718 1.05099 1.05232 1.20638 0.99169 0.89956 0.83436 1.22226 0.91282 1.01431 1.17154 1.19743 0.89584 0.80501 0.75915 1.90906 1.71866 1.27015 1.52210 1.83312 1.45517 1.15174 1.73507 1.23157 0.91194 0.85077 0.84980 1.21544 1.01053 0.88296 1.07795 1.20038 0.92875 0.96584 1.18320 1.17398 0.79075 0.83156 0.84458 1.90700 1.60196 1.62142 1.32967 1.47947 1.50066 1.26178 1.10462 1.20964 0.92578 0.83999 0.97926 0.90962 1.22052 0.97631 0.98199 0.97699 1.22768 0.97533 0.97654 0.95606 0.89719 1.22912 0.99160 0.96693 0.96498 1.21925 0.89521 0.88738 0.96711 0.91285 1.22432 0.98239 1.02736 0.93483 1.45123 1.28994 1.15807 1.42762 1.19219 0.99090 0.93205 1.25408 0.90013 1.25030 0.95639 0.99436 1.01666 1.69948 1.02055 1.35114 1.48243 0.86021 0.76654 0.83943 0.78749 1.22524 1.23460 1.18924 1.22325 0.92954 0.92096 0.92430 0.87136 0.87572 0.90824 0.80012 0.85097 0.87717 0.88227 0.71216 0.92815 0.89043 0.88554 0.93058 0.87869 0.92168 0.94557 0.95750 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.71 71.23 0.69 -2.40 16 2 C 0.07 2.31 5.93 -19.50 -0.12 2.19 16 3 C -0.30 -10.53 9.65 22.38 0.22 -10.32 16 4 C 0.49 20.49 7.93 68.46 0.54 21.03 16 5 O -0.53 -24.60 17.93 18.70 0.34 -24.26 16 6 O -0.27 -11.15 9.81 25.73 0.25 -10.90 16 7 C 0.21 7.96 7.03 25.53 0.18 8.14 16 8 C -0.13 -4.57 8.61 71.24 0.61 -3.96 16 9 C -0.27 -10.20 5.63 -20.09 -0.11 -10.32 16 10 C 0.57 20.88 2.98 86.69 0.26 21.14 16 11 O -0.58 -22.53 15.46 -4.02 -0.06 -22.59 16 12 N -0.68 -23.52 2.56 -445.65 -1.14 -24.67 16 13 C 0.15 4.30 2.72 45.00 0.12 4.42 16 14 H 0.07 1.99 8.06 -2.39 -0.02 1.97 16 15 C -0.12 -3.23 5.16 30.93 0.16 -3.07 16 16 C -0.12 -3.53 4.33 -9.05 -0.04 -3.57 16 17 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 18 C -0.11 -3.08 6.18 32.17 0.20 -2.88 16 19 C 0.14 4.20 4.30 45.79 0.20 4.39 16 20 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 21 C -0.13 -3.26 5.43 30.89 0.17 -3.09 16 22 N -0.60 -23.52 1.77 -664.46 -1.17 -24.69 16 23 C -0.24 -10.77 8.41 84.03 0.71 -10.06 16 24 H 0.08 3.61 7.84 -2.91 -0.02 3.58 16 25 C -0.02 -0.98 5.42 84.86 0.46 -0.52 16 26 N -0.91 -44.48 8.78 21.65 0.19 -44.29 16 27 Si 0.91 42.04 29.56 68.60 2.03 44.07 16 28 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 30 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 31 C 0.13 4.89 3.53 86.85 0.31 5.19 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.11 2.10 8.11 -2.39 -0.02 2.08 16 34 H 0.07 1.92 6.93 -2.38 -0.02 1.90 16 35 H 0.18 5.23 8.06 -2.91 -0.02 5.20 16 36 H 0.13 5.16 5.03 -2.39 -0.01 5.15 16 37 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.10 3.37 6.64 -2.39 -0.02 3.35 16 39 H 0.43 16.62 3.82 -92.82 -0.35 16.27 16 40 H 0.05 1.70 6.75 -2.39 -0.02 1.68 16 41 H 0.09 1.97 7.97 -2.39 -0.02 1.95 16 42 H 0.10 1.95 7.75 -2.38 -0.02 1.93 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.91 8.00 -2.39 -0.02 1.89 16 45 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.24 12.40 8.31 -92.71 -0.77 11.63 16 47 H 0.02 1.14 6.58 -2.38 -0.02 1.12 16 48 H 0.07 2.60 1.96 -15.17 -0.03 2.57 16 Total: -1.00 -60.23 360.80 5.61 -54.62 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.63 Total: 36.37 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 4.55 Total: 16.33 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -2.13 Total: -93.65 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: 0.53 Total: -57.75 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -60.23 5.61 -54.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047110757.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.658 kcal (2) G-P(sol) polarization free energy of solvation -60.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds