Wall clock time and date at job start Wed Apr 1 2020 04:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39847 * 2 1 4 4 O 1.21283 * 120.00142 * 355.17349 * 3 2 1 5 5 N 1.34778 * 119.99980 * 175.16910 * 3 2 1 6 6 C 1.46498 * 120.00105 * 185.00722 * 5 3 2 7 7 H 1.09007 * 110.63990 * 36.68530 * 6 5 3 8 8 C 1.54328 * 110.72105 * 273.55012 * 6 5 3 9 9 N 1.47023 * 107.27134 * 219.44498 * 8 6 5 10 10 C 1.36935 * 125.64780 * 178.97497 * 9 8 6 11 11 H 1.07998 * 120.00015 * 351.18038 * 10 9 8 12 12 C 1.38810 * 120.00094 * 171.17950 * 10 9 8 13 13 N 1.31619 * 119.99826 * 345.01959 * 12 10 9 14 14 Si 1.86796 * 120.00313 * 165.01828 * 12 10 9 15 15 H 1.48505 * 109.46989 * 94.99044 * 14 12 10 16 16 H 1.48502 * 109.47334 * 214.98905 * 14 12 10 17 17 H 1.48497 * 109.46928 * 334.99324 * 14 12 10 18 18 C 1.47421 * 108.70004 * 358.93378 * 9 8 6 19 19 C 1.54909 * 104.83464 * 24.13276 * 18 9 8 20 20 H 1.09000 * 111.00475 * 204.91055 * 19 18 9 21 21 O 1.42901 * 111.00457 * 81.06344 * 19 18 9 22 22 C 1.53098 * 109.47675 * 240.11082 * 2 1 3 23 23 C 1.53410 * 108.27599 * 288.22974 * 22 2 1 24 24 O 1.42820 * 108.38798 * 295.29636 * 23 22 2 25 25 C 1.35853 * 117.86177 * 49.21464 * 24 23 22 26 26 C 1.39136 * 118.49995 * 162.85949 * 25 24 23 27 27 C 1.37976 * 120.21134 * 179.56120 * 26 25 24 28 28 C 1.38286 * 119.95622 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.98776 * 0.08390 * 28 27 26 30 30 C 1.38371 * 121.79478 * 342.58622 * 25 24 23 31 31 H 1.08998 * 109.47440 * 300.10541 * 1 2 3 32 32 H 1.08998 * 109.47623 * 60.10710 * 1 2 3 33 33 H 1.09007 * 109.47088 * 180.10918 * 1 2 3 34 34 H 0.96995 * 119.99819 * 5.00470 * 5 3 2 35 35 H 1.09002 * 109.87988 * 338.85687 * 8 6 5 36 36 H 1.08998 * 109.88173 * 100.02278 * 8 6 5 37 37 H 0.97000 * 120.00351 * 180.02562 * 13 12 10 38 38 H 1.09009 * 110.36267 * 142.97033 * 18 9 8 39 39 H 1.08997 * 110.37256 * 265.17821 * 18 9 8 40 40 H 0.96702 * 114.00454 * 67.80194 * 21 19 18 41 41 H 1.09001 * 109.74008 * 168.52070 * 22 2 1 42 42 H 1.09001 * 109.71832 * 47.92534 * 22 2 1 43 43 H 1.08999 * 109.67636 * 175.57383 * 23 22 2 44 44 H 1.09000 * 109.70880 * 55.04032 * 23 22 2 45 45 H 1.08000 * 119.89900 * 359.57498 * 26 25 24 46 46 H 1.08002 * 120.02098 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00634 * 180.02562 * 28 27 26 48 48 H 1.08000 * 119.84129 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2447 2.3411 -0.0884 5 7 3.3514 1.6708 0.0983 6 6 3.8301 3.0510 0.2088 7 1 3.1457 3.6479 0.8118 8 6 4.0153 3.6783 -1.1890 9 7 5.2402 4.4902 -1.1442 10 6 5.7674 5.1976 -2.1914 11 1 5.3602 5.0765 -3.1844 12 6 6.8252 6.0705 -1.9768 13 7 7.1308 6.4457 -0.7528 14 14 7.8149 6.7126 -3.4250 15 1 7.2763 8.0305 -3.8472 16 1 9.2369 6.8643 -3.0245 17 1 7.7184 5.7535 -4.5546 18 6 5.8062 4.4172 0.2150 19 6 5.2642 3.0890 0.7996 20 1 5.2373 3.1236 1.8887 21 8 6.0357 1.9760 0.3435 22 6 2.0404 -0.7193 -1.2514 23 6 1.7712 -2.2206 -1.0869 24 8 2.5525 -2.7011 0.0079 25 6 2.5032 -2.0082 1.1754 26 6 2.9473 -2.6322 2.3370 27 6 2.9215 -1.9581 3.5406 28 6 2.4535 -0.6579 3.5940 29 6 2.0108 -0.0358 2.4432 30 6 2.0317 -0.7085 1.2326 31 1 -0.3634 0.5154 0.8890 32 1 -0.3634 0.5121 -0.8909 33 1 -0.3634 -1.0277 0.0020 34 1 3.9850 0.9364 0.0959 35 1 4.1186 2.8924 -1.9372 36 1 3.1600 4.3104 -1.4279 37 1 7.8697 7.0559 -0.6027 38 1 6.8953 4.3962 0.1718 39 1 5.4674 5.2631 0.8131 40 1 6.9396 1.9569 0.6865 41 1 3.1111 -0.5482 -1.3634 42 1 1.5148 -0.3460 -2.1303 43 1 2.0545 -2.7463 -1.9987 44 1 0.7131 -2.3841 -0.8825 45 1 3.3136 -3.6474 2.2965 46 1 3.2666 -2.4456 4.4405 47 1 2.4334 -0.1294 4.5356 48 1 1.6455 0.9795 2.4876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083957888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:16 Heat of formation + Delta-G solvation = -66.272698 kcal Electronic energy + Delta-G solvation = -31947.463585 eV Core-core repulsion = 27775.335822 eV Total energy + Delta-G solvation = -4172.127763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.49754 -39.49408 -37.96919 -37.69304 -35.26870 -34.75619 -33.96130 -31.64473 -30.92058 -30.51903 -28.60550 -28.44529 -27.21109 -25.26138 -24.31790 -23.74090 -22.85025 -21.10370 -20.58052 -19.92123 -19.13834 -18.23660 -17.47190 -17.03552 -16.76911 -16.36643 -16.30825 -15.43543 -15.16070 -14.85500 -14.67897 -14.37657 -14.28220 -13.98090 -13.86049 -13.67835 -13.50426 -13.09591 -12.90342 -12.74670 -12.53939 -12.30015 -12.15084 -12.02603 -11.90178 -11.64735 -11.36057 -11.25204 -11.02472 -10.91484 -10.81751 -10.80266 -10.61965 -10.44253 -10.14613 -9.83121 -9.64335 -9.29605 -8.99073 -8.70065 -8.58914 -8.35879 -6.82820 -5.79251 -3.07691 1.09342 1.25256 2.70899 3.04996 3.27876 3.38951 3.45202 3.48183 3.57378 4.27671 4.33689 4.43095 4.49207 4.54578 4.66783 4.77730 4.89623 4.98881 5.00905 5.16128 5.23869 5.26399 5.29732 5.32781 5.33569 5.44735 5.56166 5.61785 5.64292 5.71011 5.74219 5.84427 5.89138 6.00831 6.04301 6.11075 6.23931 6.27123 6.36425 6.54255 6.57750 6.72556 6.93616 7.21963 7.24487 7.36886 7.70931 7.79574 8.06431 8.21911 8.42457 9.14861 9.77960 10.44030 11.34907 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003031 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.693595 B = 9234.638003 C = 9652.052197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C 0.524 3.476 4 O -0.538 6.538 5 N -0.701 5.701 6 C 0.145 3.855 7 H 0.098 0.902 8 C 0.133 3.867 9 N -0.594 5.594 10 C -0.225 4.225 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.919 5.919 14 Si 0.909 3.091 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.149 3.851 19 C 0.068 3.932 20 H 0.060 0.940 21 O -0.560 6.560 22 C -0.152 4.152 23 C 0.064 3.936 24 O -0.314 6.314 25 C 0.140 3.860 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.150 4.150 29 C -0.071 4.071 30 C -0.150 4.150 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.408 0.592 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.253 0.747 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.378 0.622 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 -19.976 7.700 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.037 4.037 3 C 0.309 3.691 4 O -0.415 6.415 5 N -0.351 5.351 6 C 0.039 3.961 7 H 0.116 0.884 8 C 0.006 3.994 9 N -0.321 5.321 10 C -0.353 4.353 11 H 0.094 0.906 12 C -0.204 4.204 13 N -0.566 5.566 14 Si 0.739 3.261 15 H -0.216 1.216 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.023 3.977 19 C 0.008 3.992 20 H 0.078 0.922 21 O -0.366 6.366 22 C -0.190 4.190 23 C -0.011 4.011 24 O -0.228 6.228 25 C 0.095 3.905 26 C -0.170 4.170 27 C -0.101 4.101 28 C -0.169 4.169 29 C -0.089 4.089 30 C -0.151 4.151 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.226 0.774 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.142 0.858 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.796 -19.451 7.243 23.395 hybrid contribution 1.305 0.580 -0.487 1.509 sum -9.490 -18.870 6.757 22.177 Atomic orbital electron populations 1.21742 0.90919 1.01605 1.03878 1.19684 0.97953 0.92590 0.93491 1.20129 0.82724 0.89987 0.76252 1.90711 1.55451 1.45811 1.49500 1.45809 1.06715 1.09441 1.73164 1.22117 0.93285 0.82221 0.98436 0.88367 1.21583 0.90279 0.93961 0.93557 1.44279 1.23808 1.55474 1.08543 1.19009 1.12235 1.16895 0.87189 0.90589 1.24750 1.00429 0.98498 0.96681 1.69961 1.31174 1.36789 1.18705 0.86150 0.79676 0.78570 0.81706 1.21636 1.21592 1.20601 1.22026 0.99215 0.90520 0.85935 1.23556 0.90632 0.89139 0.95886 0.92210 1.86265 1.28061 1.46761 1.75480 1.22363 1.03533 0.95570 0.97513 1.23026 0.95422 0.94066 0.88587 1.86001 1.65646 1.52083 1.19102 1.18643 0.96369 0.89612 0.85864 1.20568 1.05359 1.00895 0.90158 1.20945 0.97712 0.94476 0.96996 1.21010 1.01945 0.95527 0.98374 1.20942 0.97063 0.99447 0.91424 1.19454 1.06697 0.93856 0.95119 0.91500 0.91065 0.92175 0.75631 0.95375 0.95369 0.93724 0.90915 0.94426 0.77436 0.89543 0.88765 0.87025 0.91298 0.85214 0.85415 0.85783 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 7.54 37.16 0.28 -1.06 16 2 C -0.03 -0.40 0.51 -156.73 -0.08 -0.48 16 3 C 0.52 8.07 5.20 -10.98 -0.06 8.01 16 4 O -0.54 -10.04 15.76 5.55 0.09 -9.95 16 5 N -0.70 -11.07 4.78 -52.03 -0.25 -11.32 16 6 C 0.14 2.68 3.08 -66.10 -0.20 2.48 16 7 H 0.10 1.86 7.77 -51.93 -0.40 1.46 16 8 C 0.13 2.99 6.99 -3.06 -0.02 2.97 16 9 N -0.59 -15.39 3.39 -170.07 -0.58 -15.96 16 10 C -0.22 -6.39 10.21 -15.06 -0.15 -6.54 16 11 H 0.08 2.12 7.87 -52.49 -0.41 1.71 16 12 C -0.01 -0.20 5.33 -17.43 -0.09 -0.30 16 13 N -0.92 -26.67 10.87 55.49 0.60 -26.07 16 14 Si 0.91 22.16 29.58 -169.99 -5.03 17.13 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.15 3.47 5.16 -2.53 -0.01 3.45 16 19 C 0.07 1.23 4.28 -24.59 -0.11 1.12 16 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 21 O -0.56 -9.40 12.23 -35.23 -0.43 -9.83 16 22 C -0.15 -1.55 4.91 -26.47 -0.13 -1.68 16 23 C 0.06 0.54 6.96 37.37 0.26 0.80 16 24 O -0.31 -3.42 10.27 -19.28 -0.20 -3.62 16 25 C 0.14 1.59 6.47 -39.20 -0.25 1.34 16 26 C -0.15 -1.52 9.94 -39.34 -0.39 -1.91 16 27 C -0.08 -0.76 10.04 -39.66 -0.40 -1.15 16 28 C -0.15 -1.49 10.04 -39.61 -0.40 -1.89 16 29 C -0.07 -0.82 9.03 -39.53 -0.36 -1.17 16 30 C -0.15 -1.75 4.38 -104.44 -0.46 -2.21 16 31 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.06 0.53 6.66 -51.92 -0.35 0.18 16 34 H 0.41 6.21 6.90 -40.82 -0.28 5.93 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.07 1.84 7.04 -51.92 -0.37 1.48 16 39 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.38 5.04 9.12 45.56 0.42 5.45 16 41 H 0.09 0.98 7.52 -51.93 -0.39 0.59 16 42 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 45 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 48 H 0.12 1.50 7.35 -52.49 -0.39 1.12 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -33.35 382.36 -8.88 -42.23 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.28 Total: 9.86 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.57 Total: 1.77 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.22 Total: -53.35 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.54 Total: -23.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.35 -8.88 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083957888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.038 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds