Wall clock time and date at job start Wed Apr 1 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.39847 * 2 1 4 4 O 1.21283 * 120.00142 * 355.17349 * 3 2 1 5 5 N 1.34778 * 119.99980 * 175.16910 * 3 2 1 6 6 C 1.46498 * 120.00105 * 185.00722 * 5 3 2 7 7 H 1.09007 * 110.63990 * 36.68530 * 6 5 3 8 8 C 1.54328 * 110.72105 * 273.55012 * 6 5 3 9 9 N 1.47023 * 107.27134 * 219.44498 * 8 6 5 10 10 C 1.36935 * 125.64780 * 178.97497 * 9 8 6 11 11 H 1.07998 * 120.00015 * 351.18038 * 10 9 8 12 12 C 1.38810 * 120.00094 * 171.17950 * 10 9 8 13 13 N 1.31619 * 119.99826 * 345.01959 * 12 10 9 14 14 Si 1.86796 * 120.00313 * 165.01828 * 12 10 9 15 15 H 1.48505 * 109.46989 * 94.99044 * 14 12 10 16 16 H 1.48502 * 109.47334 * 214.98905 * 14 12 10 17 17 H 1.48497 * 109.46928 * 334.99324 * 14 12 10 18 18 C 1.47421 * 108.70004 * 358.93378 * 9 8 6 19 19 C 1.54909 * 104.83464 * 24.13276 * 18 9 8 20 20 H 1.09000 * 111.00475 * 204.91055 * 19 18 9 21 21 O 1.42901 * 111.00457 * 81.06344 * 19 18 9 22 22 C 1.53098 * 109.47675 * 240.11082 * 2 1 3 23 23 C 1.53410 * 108.27599 * 288.22974 * 22 2 1 24 24 O 1.42820 * 108.38798 * 295.29636 * 23 22 2 25 25 C 1.35853 * 117.86177 * 49.21464 * 24 23 22 26 26 C 1.39136 * 118.49995 * 162.85949 * 25 24 23 27 27 C 1.37976 * 120.21134 * 179.56120 * 26 25 24 28 28 C 1.38286 * 119.95622 * 359.97438 * 27 26 25 29 29 C 1.38106 * 119.98776 * 0.08390 * 28 27 26 30 30 C 1.38371 * 121.79478 * 342.58622 * 25 24 23 31 31 H 1.08998 * 109.47440 * 300.10541 * 1 2 3 32 32 H 1.08998 * 109.47623 * 60.10710 * 1 2 3 33 33 H 1.09007 * 109.47088 * 180.10918 * 1 2 3 34 34 H 0.96995 * 119.99819 * 5.00470 * 5 3 2 35 35 H 1.09002 * 109.87988 * 338.85687 * 8 6 5 36 36 H 1.08998 * 109.88173 * 100.02278 * 8 6 5 37 37 H 0.97000 * 120.00351 * 180.02562 * 13 12 10 38 38 H 1.09009 * 110.36267 * 142.97033 * 18 9 8 39 39 H 1.08997 * 110.37256 * 265.17821 * 18 9 8 40 40 H 0.96702 * 114.00454 * 67.80194 * 21 19 18 41 41 H 1.09001 * 109.74008 * 168.52070 * 22 2 1 42 42 H 1.09001 * 109.71832 * 47.92534 * 22 2 1 43 43 H 1.08999 * 109.67636 * 175.57383 * 23 22 2 44 44 H 1.09000 * 109.70880 * 55.04032 * 23 22 2 45 45 H 1.08000 * 119.89900 * 359.57498 * 26 25 24 46 46 H 1.08002 * 120.02098 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00634 * 180.02562 * 28 27 26 48 48 H 1.08000 * 119.84129 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0305 1.4215 0.0000 4 8 1.2447 2.3411 -0.0884 5 7 3.3514 1.6708 0.0983 6 6 3.8301 3.0510 0.2088 7 1 3.1457 3.6479 0.8118 8 6 4.0153 3.6783 -1.1890 9 7 5.2402 4.4902 -1.1442 10 6 5.7674 5.1976 -2.1914 11 1 5.3602 5.0765 -3.1844 12 6 6.8252 6.0705 -1.9768 13 7 7.1308 6.4457 -0.7528 14 14 7.8149 6.7126 -3.4250 15 1 7.2763 8.0305 -3.8472 16 1 9.2369 6.8643 -3.0245 17 1 7.7184 5.7535 -4.5546 18 6 5.8062 4.4172 0.2150 19 6 5.2642 3.0890 0.7996 20 1 5.2373 3.1236 1.8887 21 8 6.0357 1.9760 0.3435 22 6 2.0404 -0.7193 -1.2514 23 6 1.7712 -2.2206 -1.0869 24 8 2.5525 -2.7011 0.0079 25 6 2.5032 -2.0082 1.1754 26 6 2.9473 -2.6322 2.3370 27 6 2.9215 -1.9581 3.5406 28 6 2.4535 -0.6579 3.5940 29 6 2.0108 -0.0358 2.4432 30 6 2.0317 -0.7085 1.2326 31 1 -0.3634 0.5154 0.8890 32 1 -0.3634 0.5121 -0.8909 33 1 -0.3634 -1.0277 0.0020 34 1 3.9850 0.9364 0.0959 35 1 4.1186 2.8924 -1.9372 36 1 3.1600 4.3104 -1.4279 37 1 7.8697 7.0559 -0.6027 38 1 6.8953 4.3962 0.1718 39 1 5.4674 5.2631 0.8131 40 1 6.9396 1.9569 0.6865 41 1 3.1111 -0.5482 -1.3634 42 1 1.5148 -0.3460 -2.1303 43 1 2.0545 -2.7463 -1.9987 44 1 0.7131 -2.3841 -0.8825 45 1 3.3136 -3.6474 2.2965 46 1 3.2666 -2.4456 4.4405 47 1 2.4334 -0.1294 4.5356 48 1 1.6455 0.9795 2.4876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083957888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:15 Heat of formation + Delta-G solvation = -90.230645 kcal Electronic energy + Delta-G solvation = -31948.502480 eV Core-core repulsion = 27775.335822 eV Total energy + Delta-G solvation = -4173.166658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.41424 -40.74501 -39.47710 -38.43545 -36.43338 -36.21658 -35.50031 -33.58113 -31.66961 -31.28804 -30.40057 -29.27026 -28.93095 -26.75381 -25.64500 -24.65577 -23.71869 -22.55464 -22.03059 -21.45524 -20.19924 -19.27062 -18.94637 -18.31009 -18.15591 -17.23237 -17.20091 -16.96131 -16.77195 -16.03822 -15.89868 -15.73001 -15.54952 -15.13673 -14.79935 -14.74526 -14.62928 -14.53236 -14.39666 -14.21341 -13.75080 -13.45811 -13.20939 -13.11371 -13.00074 -12.90805 -12.84519 -12.74764 -12.43497 -12.34541 -12.17672 -12.06812 -12.03658 -11.89241 -11.68474 -11.57971 -10.93598 -10.79714 -10.72591 -10.15250 -9.77461 -9.13329 -8.92372 -7.94836 -5.26521 0.31455 0.47521 1.44219 1.45010 1.48338 1.55831 2.00870 2.35753 2.47247 2.78078 3.12682 3.24993 3.41977 3.44687 3.58268 3.63302 3.75609 3.76635 3.90626 3.97956 4.10316 4.23131 4.23310 4.27464 4.40011 4.46669 4.50560 4.55225 4.57439 4.66677 4.78349 4.79007 4.82152 4.87222 4.92945 4.96444 5.06565 5.19515 5.31921 5.33403 5.35166 5.45362 5.49869 5.56853 5.60865 5.85288 6.11799 6.46369 6.50746 6.84112 7.02481 7.15976 7.67946 8.33860 9.17413 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.003031 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.693595 B = 9234.638003 C = 9652.052197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.027 4.027 3 C 0.525 3.475 4 O -0.574 6.574 5 N -0.692 5.692 6 C 0.156 3.844 7 H 0.094 0.906 8 C 0.135 3.865 9 N -0.614 5.614 10 C -0.250 4.250 11 H 0.071 0.929 12 C -0.054 4.054 13 N -0.942 5.942 14 Si 0.976 3.024 15 H -0.287 1.287 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.152 3.848 19 C 0.093 3.907 20 H 0.096 0.904 21 O -0.562 6.562 22 C -0.152 4.152 23 C 0.065 3.935 24 O -0.323 6.323 25 C 0.130 3.870 26 C -0.156 4.156 27 C -0.077 4.077 28 C -0.153 4.153 29 C -0.087 4.087 30 C -0.160 4.160 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.022 0.978 36 H 0.007 0.993 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.012 0.988 40 H 0.396 0.604 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.158 0.842 47 H 0.140 0.860 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 -22.556 8.234 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.030 4.030 3 C 0.312 3.688 4 O -0.454 6.454 5 N -0.342 5.342 6 C 0.050 3.950 7 H 0.112 0.888 8 C 0.008 3.992 9 N -0.340 5.340 10 C -0.379 4.379 11 H 0.089 0.911 12 C -0.248 4.248 13 N -0.590 5.590 14 Si 0.804 3.196 15 H -0.214 1.214 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.027 3.973 19 C 0.033 3.967 20 H 0.113 0.887 21 O -0.370 6.370 22 C -0.190 4.190 23 C -0.010 4.010 24 O -0.237 6.237 25 C 0.085 3.915 26 C -0.175 4.175 27 C -0.095 4.095 28 C -0.171 4.171 29 C -0.105 4.105 30 C -0.161 4.161 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.251 0.749 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.030 0.970 40 H 0.246 0.754 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.155 0.845 44 H 0.102 0.898 45 H 0.164 0.836 46 H 0.175 0.825 47 H 0.158 0.842 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.507 -22.071 7.785 25.654 hybrid contribution 1.193 1.387 -0.644 1.940 sum -9.314 -20.685 7.140 23.782 Atomic orbital electron populations 1.21736 0.90209 1.02880 1.03001 1.19641 0.98441 0.90027 0.94885 1.20821 0.81998 0.91360 0.74670 1.90693 1.56201 1.47461 1.51013 1.45672 1.07197 1.08187 1.73179 1.21786 0.93940 0.83514 0.95777 0.88795 1.21603 0.88378 0.93154 0.96027 1.44553 1.25006 1.55428 1.09014 1.19305 1.13017 1.17703 0.87908 0.91139 1.25546 1.01117 0.98824 0.99335 1.70124 1.31324 1.37119 1.20406 0.85124 0.77902 0.77879 0.78743 1.21380 1.21238 1.19795 1.21936 0.97768 0.92777 0.84860 1.23234 0.89617 0.86620 0.97241 0.88673 1.86235 1.29396 1.45478 1.75912 1.22390 1.02707 0.97042 0.96853 1.23227 0.96172 0.92592 0.88961 1.85992 1.66184 1.52207 1.19349 1.18816 0.96618 0.89531 0.86551 1.20888 1.04835 1.01710 0.90040 1.21291 0.96417 0.93951 0.97832 1.21257 1.01338 0.96104 0.98430 1.20945 0.98204 0.99061 0.92326 1.19395 1.07697 0.94316 0.94729 0.92709 0.91651 0.89730 0.74943 0.95968 0.97535 0.93942 0.93262 0.96987 0.75363 0.90797 0.88023 0.84535 0.89848 0.83613 0.82484 0.84169 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 7.54 71.98 0.54 -1.98 16 2 C -0.03 -0.62 0.51 -53.62 -0.03 -0.64 16 3 C 0.52 16.26 5.20 87.66 0.46 16.72 16 4 O -0.57 -22.06 15.76 -3.04 -0.05 -22.11 16 5 N -0.69 -21.73 4.78 -436.91 -2.09 -23.82 16 6 C 0.16 5.84 3.08 46.18 0.14 5.98 16 7 H 0.09 3.63 7.77 -2.38 -0.02 3.61 16 8 C 0.14 6.27 6.99 86.73 0.61 6.88 16 9 N -0.61 -32.70 3.39 -691.99 -2.35 -35.05 16 10 C -0.25 -14.58 10.21 84.03 0.86 -13.72 16 11 H 0.07 4.05 7.87 -2.91 -0.02 4.03 16 12 C -0.05 -3.10 5.33 84.86 0.45 -2.64 16 13 N -0.94 -55.73 10.87 21.65 0.24 -55.50 16 14 Si 0.98 45.99 29.58 68.60 2.03 48.02 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 16 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 18 C 0.15 7.24 5.16 86.86 0.45 7.69 16 19 C 0.09 3.29 4.28 31.98 0.14 3.43 16 20 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 21 O -0.56 -18.00 12.23 -148.98 -1.82 -19.82 16 22 C -0.15 -2.91 4.91 30.76 0.15 -2.75 16 23 C 0.06 0.93 6.96 72.12 0.50 1.43 16 24 O -0.32 -6.24 10.27 -91.90 -0.94 -7.19 16 25 C 0.13 2.67 6.47 22.52 0.15 2.82 16 26 C -0.16 -2.70 9.94 22.42 0.22 -2.48 16 27 C -0.08 -1.16 10.04 22.22 0.22 -0.94 16 28 C -0.15 -2.72 10.04 22.25 0.22 -2.49 16 29 C -0.09 -1.93 9.03 22.30 0.20 -1.73 16 30 C -0.16 -3.53 4.38 -19.75 -0.09 -3.62 16 31 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 33 H 0.08 1.32 6.66 -2.38 -0.02 1.31 16 34 H 0.41 12.22 6.90 -92.71 -0.64 11.58 16 35 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.05 2.55 7.04 -2.38 -0.02 2.53 16 39 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 40 H 0.40 9.74 9.12 -74.06 -0.68 9.07 16 41 H 0.07 1.60 7.52 -2.39 -0.02 1.59 16 42 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 43 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 0.97 6.57 -2.39 -0.02 0.95 16 45 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 48 H 0.11 2.64 7.35 -2.91 -0.02 2.62 16 Total: -1.00 -73.84 382.36 -0.11 -73.95 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.32 Total: 29.57 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.20 Total: 11.94 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.20 Total: -114.37 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.81 Total: -49.12 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.84 -0.11 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083957888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.281 kcal (2) G-P(sol) polarization free energy of solvation -73.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds