Wall clock time and date at job start Wed Apr 1 2020 05:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30834 * 125.95939 * 2 1 4 4 C 1.33236 * 109.82667 * 180.18951 * 3 2 1 5 5 C 1.50707 * 125.52483 * 179.85135 * 4 3 2 6 6 C 1.50701 * 109.47036 * 269.71837 * 5 4 3 7 7 O 1.21281 * 120.00107 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99641 * 180.02562 * 6 5 4 9 9 C 1.47587 * 134.48985 * 180.02562 * 8 6 5 10 10 C 1.53943 * 86.11372 * 155.35700 * 9 8 6 11 11 N 1.46497 * 113.73765 * 137.95286 * 10 9 8 12 12 C 1.35317 * 125.87017 * 276.92228 * 11 10 9 13 13 C 1.35348 * 106.17735 * 180.21003 * 12 11 10 14 14 C 1.50695 * 126.75026 * 179.78015 * 13 12 11 15 15 N 1.46501 * 109.47705 * 94.99599 * 14 13 12 16 16 C 1.36933 * 120.00058 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00207 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99868 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00084 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00269 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47310 * 90.00187 * 20 18 16 22 22 H 1.48504 * 109.47223 * 210.00512 * 20 18 16 23 23 H 1.48500 * 109.47110 * 330.00038 * 20 18 16 24 24 N 1.33774 * 106.49647 * 359.63857 * 13 12 11 25 25 N 1.28636 * 108.88665 * 0.37294 * 24 13 12 26 26 C 1.47811 * 134.45888 * 359.86601 * 8 6 5 27 27 N 1.30714 * 108.94783 * 359.59338 * 4 3 2 28 28 N 1.34428 * 125.96487 * 179.74601 * 2 1 3 29 29 H 0.97003 * 126.81671 * 359.93432 * 28 2 1 30 30 H 1.09004 * 109.47568 * 270.24712 * 1 2 3 31 31 H 1.09006 * 109.47421 * 30.25063 * 1 2 3 32 32 H 1.09006 * 109.47113 * 150.25138 * 1 2 3 33 33 H 1.09001 * 109.46978 * 149.72029 * 5 4 3 34 34 H 1.08999 * 109.47109 * 29.71886 * 5 4 3 35 35 H 1.09000 * 113.76860 * 41.05689 * 9 8 6 36 36 H 1.09000 * 113.86642 * 269.67422 * 9 8 6 37 37 H 1.09004 * 113.74249 * 269.15104 * 10 9 8 38 38 H 1.08002 * 126.90702 * 359.93974 * 12 11 10 39 39 H 1.09004 * 109.46902 * 214.99581 * 14 13 12 40 40 H 1.09001 * 109.47591 * 334.99010 * 14 13 12 41 41 H 0.96996 * 119.99307 * 359.97438 * 15 14 13 42 42 H 0.96999 * 120.00192 * 180.02562 * 19 18 16 43 43 H 1.09001 * 113.76395 * 90.38071 * 26 8 6 44 44 H 1.08996 * 113.83516 * 318.92214 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5551 0.6888 -0.0041 5 6 4.7371 1.6237 -0.0087 6 6 5.1306 1.9291 -1.4310 7 8 4.5119 1.4365 -2.3505 8 7 6.1702 2.7497 -1.6812 9 6 6.8162 3.2560 -2.9077 10 6 7.2825 4.4436 -2.0463 11 7 8.6686 4.8460 -2.2975 12 6 9.7701 4.2771 -1.7553 13 6 10.8294 4.9574 -2.2522 14 6 12.2841 4.7090 -1.9473 15 7 12.8571 3.8381 -2.9766 16 6 14.1752 3.4734 -2.9088 17 1 14.7924 3.8275 -2.0963 18 6 14.7180 2.6478 -3.8838 19 7 13.9658 2.2159 -4.8739 20 14 16.5159 2.1497 -3.7910 21 1 16.6418 0.8933 -3.0095 22 1 17.0413 1.9340 -5.1631 23 1 17.2941 3.2260 -3.1266 24 7 10.3311 5.8918 -3.0697 25 7 9.0479 5.8014 -3.0723 26 6 7.1188 3.5058 -0.8367 27 7 3.6194 -0.6167 0.0019 28 7 2.2965 -1.0880 0.0048 29 1 2.0093 -2.0146 0.0098 30 1 -0.3634 0.0044 1.0277 31 1 -0.3634 0.8878 -0.5177 32 1 -0.3634 -0.8923 -0.5100 33 1 5.5744 1.1533 0.5069 34 1 4.4702 2.5494 0.5012 35 1 6.1125 3.5324 -3.6929 36 1 7.6310 2.6281 -3.2685 37 1 6.5892 5.2847 -2.0462 38 1 9.7981 3.4497 -1.0617 39 1 12.8200 5.6581 -1.9349 40 1 12.3743 4.2282 -0.9732 41 1 12.3027 3.5199 -3.7062 42 1 14.3449 1.6387 -5.5550 43 1 8.0226 2.9505 -0.5858 44 1 6.6562 3.9812 0.0282 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105235347.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:23 Heat of formation + Delta-G solvation = 179.876540 kcal Electronic energy + Delta-G solvation = -28443.239298 eV Core-core repulsion = 24242.830525 eV Total energy + Delta-G solvation = -4200.408773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.161 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.28737 -43.22070 -41.43255 -39.20661 -36.77389 -34.83535 -34.68437 -33.56307 -33.39812 -31.70537 -31.60352 -29.71585 -28.57158 -27.82562 -27.29631 -25.10237 -24.70255 -22.83184 -22.32269 -21.97519 -21.47389 -20.09369 -19.39857 -18.94502 -18.73496 -18.23459 -17.45447 -17.03921 -16.60637 -16.55356 -16.29366 -15.94376 -15.59726 -15.26660 -15.12332 -15.04100 -14.52554 -14.43419 -14.23974 -13.92981 -13.80478 -13.67413 -13.64486 -13.41214 -13.15905 -12.94971 -12.77987 -12.76381 -12.60968 -12.46473 -12.07248 -11.85776 -11.79978 -11.40375 -11.16576 -11.06774 -10.98937 -10.92663 -10.52493 -10.19081 -10.02880 -8.98808 -7.91299 -5.21155 0.49782 0.59745 1.04589 1.33945 1.48204 1.53393 1.54217 1.62437 1.63762 1.70335 1.97496 2.61455 2.80503 2.93687 3.09097 3.40629 3.46355 3.49728 3.63882 3.71881 3.84918 3.98465 4.16414 4.21403 4.26788 4.33717 4.35714 4.37634 4.44562 4.55781 4.57127 4.69256 4.70431 4.73980 4.91750 5.03443 5.17324 5.19176 5.23035 5.31341 5.53965 5.67455 6.15967 6.28468 6.34447 6.87868 7.01151 7.35499 7.54633 8.08122 8.32822 9.32580 Molecular weight = 346.16amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.001802 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.852542 B =15531.468920 C =16668.514997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.286 3.714 3 N -0.566 5.566 4 C 0.231 3.769 5 C -0.036 4.036 6 C 0.552 3.448 7 O -0.579 6.579 8 N -0.640 5.640 9 C 0.096 3.904 10 C 0.110 3.890 11 N -0.277 5.277 12 C -0.015 4.015 13 C -0.037 4.037 14 C 0.234 3.766 15 N -0.740 5.740 16 C -0.241 4.241 17 H 0.086 0.914 18 C -0.079 4.079 19 N -0.974 5.974 20 Si 0.978 3.022 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.266 1.266 24 N -0.297 5.297 25 N -0.109 5.109 26 C 0.110 3.890 27 N -0.340 5.340 28 N -0.476 5.476 29 H 0.455 0.545 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.169 0.831 38 H 0.232 0.768 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.121 0.879 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.656 -3.145 19.027 36.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 N -0.297 5.297 4 C -0.052 4.052 5 C -0.078 4.078 6 C 0.342 3.658 7 O -0.458 6.458 8 N -0.376 5.376 9 C -0.028 4.028 10 C 0.008 3.992 11 N -0.071 5.071 12 C -0.166 4.166 13 C -0.175 4.175 14 C 0.106 3.894 15 N -0.383 5.383 16 C -0.372 4.372 17 H 0.104 0.896 18 C -0.271 4.271 19 N -0.625 5.625 20 Si 0.807 3.193 21 H -0.211 1.211 22 H -0.228 1.228 23 H -0.191 1.191 24 N -0.164 5.164 25 N -0.087 5.087 26 C -0.012 4.012 27 N -0.170 5.170 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.187 0.813 38 H 0.248 0.752 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.139 0.861 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -30.912 -2.432 17.729 35.719 hybrid contribution 0.885 -2.015 -0.525 2.263 sum -30.027 -4.447 17.204 34.891 Atomic orbital electron populations 1.20655 0.80107 1.06355 1.06284 1.25253 0.98325 0.82029 0.93547 1.70298 1.01546 1.31167 1.26661 1.23739 0.93594 0.90106 0.97802 1.19974 0.94046 1.00325 0.93450 1.20353 0.78106 0.75886 0.91483 1.90754 1.54333 1.52126 1.48538 1.49586 1.29903 1.47625 1.10480 1.23589 0.96759 0.91683 0.90771 1.24116 0.77359 0.98986 0.98703 1.47406 1.08626 1.21891 1.29213 1.23773 0.84382 1.03343 1.05123 1.22299 0.98251 0.96952 0.99975 1.19007 0.84111 0.93624 0.92636 1.42528 1.09083 1.57814 1.28828 1.19713 0.87701 1.22622 1.07176 0.89590 1.25628 1.02453 1.01547 0.97454 1.69860 1.36991 1.40153 1.15466 0.85074 0.79790 0.78335 0.76149 1.21055 1.22819 1.19104 1.75059 1.00608 1.22210 1.18536 1.78206 1.07461 1.09267 1.13752 1.24062 0.93856 0.88624 0.94699 1.77880 0.98945 1.12735 1.27448 1.47892 1.03288 1.11092 1.57303 0.69670 0.86708 0.88366 0.87288 0.83623 0.82574 0.88688 0.89725 0.81350 0.75157 0.95365 0.91496 0.79902 0.94223 0.86132 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 71.24 0.75 0.49 16 2 C 0.29 4.14 8.24 138.23 1.14 5.28 16 3 N -0.57 -11.78 11.19 -179.72 -2.01 -13.79 16 4 C 0.23 4.87 6.63 138.63 0.92 5.79 16 5 C -0.04 -0.49 6.08 29.10 0.18 -0.31 16 6 C 0.55 11.15 8.05 87.66 0.71 11.85 16 7 O -0.58 -18.32 16.76 -3.03 -0.05 -18.37 16 8 N -0.64 -9.29 3.61 -836.57 -3.02 -12.31 16 9 C 0.10 1.69 8.64 86.48 0.75 2.43 16 10 C 0.11 1.43 5.14 46.74 0.24 1.67 16 11 N -0.28 -6.34 3.54 -332.08 -1.18 -7.52 16 12 C -0.02 -0.37 10.72 83.49 0.89 0.53 16 13 C -0.04 -1.29 6.61 41.59 0.28 -1.01 16 14 C 0.23 9.33 6.82 85.63 0.58 9.92 16 15 N -0.74 -38.25 5.59 -347.18 -1.94 -40.19 16 16 C -0.24 -13.39 9.99 84.03 0.84 -12.55 16 17 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 20 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 N -0.30 -11.72 12.41 -48.60 -0.60 -12.32 16 25 N -0.11 -3.55 13.17 37.02 0.49 -3.07 16 26 C 0.11 0.66 8.00 86.43 0.69 1.35 16 27 N -0.34 -7.59 12.80 -51.33 -0.66 -8.24 16 28 N -0.48 -7.07 7.45 -50.71 -0.38 -7.45 16 29 H 0.45 3.21 8.96 -213.10 -1.91 1.30 16 30 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.17 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.23 3.42 6.73 -2.91 -0.02 3.40 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.37 21.09 7.66 -92.71 -0.71 20.38 16 42 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.12 0.48 6.31 -2.39 -0.02 0.46 16 44 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -96.79 386.74 -0.15 -96.95 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -1.54 Total: 17.50 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 8.43 Total: 21.32 kcal Atomic # 7 Polarization: -156.77 SS G_CDS: -9.02 Total: -165.79 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -96.79 -0.15 -96.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105235347.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.822 kcal (2) G-P(sol) polarization free energy of solvation -96.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds