Wall clock time and date at job start Wed Apr 1 2020 04:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00076 * 2 1 4 4 C 1.53003 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47241 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47142 * 179.97438 * 5 4 3 7 7 C 1.47011 * 111.00056 * 293.95041 * 6 5 4 8 8 C 1.53099 * 109.26232 * 177.60774 * 7 6 5 9 9 O 1.43013 * 109.25451 * 56.84679 * 8 7 6 10 10 C 1.43016 * 113.74199 * 301.33451 * 9 8 7 11 11 C 1.52994 * 109.50505 * 298.68835 * 10 9 8 12 12 C 1.53004 * 109.50434 * 178.60455 * 10 9 8 13 13 N 1.46500 * 109.47331 * 64.99948 * 12 10 9 14 14 C 1.34774 * 119.99961 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00138 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99741 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47011 * 110.99868 * 170.31814 * 6 5 4 27 27 H 1.09000 * 109.46965 * 59.99850 * 1 2 3 28 28 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47096 * 300.00589 * 1 2 3 30 30 H 1.09001 * 109.47026 * 59.99636 * 3 2 1 31 31 H 1.08998 * 109.46572 * 299.99590 * 3 2 1 32 32 H 1.09001 * 109.47042 * 59.99516 * 4 3 2 33 33 H 1.09000 * 109.46644 * 299.99639 * 4 3 2 34 34 H 1.09001 * 109.46861 * 59.99722 * 5 4 3 35 35 H 1.09003 * 109.46791 * 300.00174 * 5 4 3 36 36 H 1.09009 * 109.50597 * 57.67306 * 7 6 5 37 37 H 1.09004 * 109.50754 * 297.54818 * 7 6 5 38 38 H 1.09004 * 109.50627 * 296.92096 * 8 7 6 39 39 H 1.08993 * 109.50750 * 176.78429 * 8 7 6 40 40 H 1.08998 * 109.47379 * 299.91871 * 11 10 9 41 41 H 1.09000 * 109.47088 * 59.91392 * 11 10 9 42 42 H 1.09001 * 109.47351 * 179.91028 * 11 10 9 43 43 H 1.08997 * 109.47505 * 304.99540 * 12 10 9 44 44 H 1.09002 * 109.46765 * 185.00004 * 12 10 9 45 45 H 0.97002 * 119.99685 * 0.02562 * 13 12 10 46 46 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 47 47 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 48 48 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.51050 * 62.45920 * 26 6 5 50 50 H 1.08997 * 109.50929 * 302.32476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4664 0.0012 7 6 6.1024 1.8704 1.2564 8 6 7.6239 1.7132 1.1912 9 8 8.2191 2.9880 0.9346 10 6 7.7743 3.5971 -0.2805 11 6 8.1471 2.7043 -1.4657 12 6 8.4421 4.9643 -0.4409 13 7 9.8871 4.7860 -0.6035 14 6 10.6850 5.8604 -0.7628 15 8 10.2067 6.9749 -0.7720 16 6 12.1713 5.6769 -0.9307 17 16 12.9612 7.2942 -1.1218 18 6 14.6423 6.7954 -1.2936 19 1 14.9004 5.7472 -1.2624 20 6 15.6349 7.7496 -1.4689 21 7 16.8909 7.3770 -1.5967 22 14 15.1884 9.5627 -1.5234 23 1 14.9043 9.9606 -2.9256 24 1 13.9844 9.8013 -0.6875 25 1 16.3215 10.3674 -1.0005 26 6 6.2544 3.7733 -0.2301 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6440 0.8909 34 1 3.8358 3.1238 0.8895 35 1 3.8365 3.1227 -0.8905 36 1 5.6411 0.8925 1.3949 37 1 5.8389 2.5193 2.0917 38 1 7.8844 1.0220 0.3896 39 1 7.9907 1.3248 2.1412 40 1 9.2292 2.5780 -1.4993 41 1 7.6711 1.7305 -1.3509 42 1 7.8065 3.1682 -2.3914 43 1 8.2481 5.5696 0.4445 44 1 8.0367 5.4658 -1.3197 45 1 10.2695 3.8945 -0.5973 46 1 12.3650 5.0715 -1.8162 47 1 12.5771 5.1756 -0.0520 48 1 17.5845 8.0438 -1.7196 49 1 5.9935 4.4527 0.5814 50 1 5.9041 4.1846 -1.1768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107753439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:19 Heat of formation + Delta-G solvation = -124.171335 kcal Electronic energy + Delta-G solvation = -27984.952158 eV Core-core repulsion = 23945.757673 eV Total energy + Delta-G solvation = -4039.194485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.69655 -39.08172 -38.51094 -36.78384 -34.99958 -32.97108 -32.41202 -32.24444 -29.65824 -29.23834 -27.70000 -26.65272 -25.80827 -25.49229 -24.34446 -22.94615 -21.31151 -20.39427 -19.70685 -17.96489 -17.20977 -16.92981 -16.76718 -16.56927 -16.33308 -15.89963 -15.68140 -15.42857 -15.12343 -15.03925 -14.93952 -14.56111 -14.38614 -14.08698 -13.71702 -13.44617 -13.21132 -12.96372 -12.77008 -12.74880 -12.54738 -12.38652 -12.18281 -12.09686 -11.85782 -11.66431 -11.57269 -11.53676 -11.23863 -11.21620 -10.98302 -10.70870 -10.52819 -10.21909 -9.97524 -9.82658 -9.47922 -8.98569 -8.90908 -8.85817 -8.46324 -6.88049 -6.26044 -3.97290 2.77074 2.96346 3.03322 3.30874 3.34919 3.38113 3.51853 3.53310 3.73018 4.29831 4.35918 4.39524 4.45355 4.47022 4.56988 4.59426 4.70257 4.76758 4.79502 4.81710 4.82628 4.88316 4.91877 4.98158 5.11411 5.13087 5.13842 5.17723 5.22916 5.29360 5.33480 5.41384 5.47579 5.56769 5.60807 5.64118 5.67604 5.75790 5.82724 6.00721 6.07213 6.42404 6.44203 6.56741 6.61411 6.87182 7.67826 7.97128 8.44936 8.54704 9.20302 10.83241 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.039129 B = 0.001579 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.406557 B =17725.312711 C =18063.920327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.062 3.938 4 C -0.116 4.116 5 C 0.058 3.942 6 N -0.531 5.531 7 C 0.013 3.987 8 C 0.060 3.940 9 O -0.369 6.369 10 C 0.109 3.891 11 C -0.170 4.170 12 C 0.139 3.861 13 N -0.728 5.728 14 C 0.531 3.469 15 O -0.523 6.523 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.235 1.235 25 H -0.274 1.274 26 C 0.034 3.966 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.402 0.598 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.270 0.730 49 H 0.048 0.952 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.952 -16.447 4.131 36.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.153 4.153 5 C -0.070 4.070 6 N -0.256 5.256 7 C -0.115 4.115 8 C -0.017 4.017 9 O -0.288 6.288 10 C 0.069 3.931 11 C -0.227 4.227 12 C 0.014 3.986 13 N -0.384 5.384 14 C 0.317 3.683 15 O -0.398 6.398 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.159 1.159 25 H -0.200 1.200 26 C -0.095 4.095 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.238 0.762 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -32.178 -14.921 3.833 35.676 hybrid contribution 0.096 -0.365 0.498 0.625 sum -32.082 -15.286 4.331 35.800 Atomic orbital electron populations 1.22751 0.80820 1.02898 1.00035 1.87873 1.19867 1.27963 1.95436 1.22478 0.94053 0.84757 1.00239 1.21486 0.92441 0.97242 1.04173 1.21995 0.86986 0.96578 1.01402 1.62126 1.05775 1.23177 1.34477 1.22894 0.97121 1.00799 0.90657 1.22690 0.90911 0.86052 1.02007 1.88118 1.66810 1.33554 1.40320 1.21754 0.92190 0.93292 0.85892 1.22285 1.01972 1.00972 0.97488 1.21183 0.81046 0.93903 1.02507 1.45861 1.06683 1.09793 1.76026 1.20262 0.88401 0.84228 0.75400 1.90693 1.76139 1.24175 1.48771 1.23271 0.93379 1.05088 1.05652 1.84762 1.05402 1.05686 1.95733 1.22332 0.89465 0.97625 1.57443 0.89386 1.24708 0.94008 0.99317 0.93228 1.69943 0.99690 1.34808 1.47331 0.86735 0.80191 0.84635 0.80299 1.19229 1.15917 1.19970 1.22658 0.94171 0.90213 1.02436 0.93977 0.89512 0.94064 0.93415 0.93125 0.90022 0.91001 0.94433 0.90227 0.89281 0.93812 0.91769 0.88302 0.91914 0.90674 0.91249 0.90897 0.90043 0.76232 0.88520 0.88422 0.91980 0.93402 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.93 10.70 -35.23 -0.38 -3.31 16 3 C 0.06 0.34 5.94 37.16 0.22 0.56 16 4 C -0.12 -0.65 5.51 -26.73 -0.15 -0.80 16 5 C 0.06 0.33 4.96 -3.83 -0.02 0.31 16 6 N -0.53 -3.66 4.10 -234.31 -0.96 -4.62 16 7 C 0.01 0.09 5.43 -3.71 -0.02 0.07 16 8 C 0.06 0.45 6.61 37.21 0.25 0.70 16 9 O -0.37 -3.75 10.23 -35.23 -0.36 -4.11 16 10 C 0.11 0.99 0.78 -90.57 -0.07 0.92 16 11 C -0.17 -1.40 7.94 37.15 0.30 -1.11 16 12 C 0.14 1.60 4.85 -4.04 -0.02 1.58 16 13 N -0.73 -9.80 5.19 -60.29 -0.31 -10.11 16 14 C 0.53 9.66 7.85 -10.99 -0.09 9.58 16 15 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 16 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.79 13.97 55.49 0.78 -26.01 16 22 Si 0.86 21.97 27.74 -169.99 -4.72 17.26 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.03 0.26 4.34 -3.71 -0.02 0.24 16 27 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.43 6.51 -51.93 -0.34 0.09 16 34 H 0.04 0.21 8.12 -51.93 -0.42 -0.21 16 35 H 0.08 0.40 8.04 -51.93 -0.42 -0.01 16 36 H 0.09 0.49 6.37 -51.92 -0.33 0.16 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.46 6.49 -51.93 -0.34 0.12 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.53 6.58 -51.93 -0.34 0.19 16 41 H 0.07 0.60 6.13 -51.93 -0.32 0.28 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.40 4.60 7.00 -40.82 -0.29 4.31 16 46 H 0.10 1.77 8.14 -51.91 -0.42 1.34 16 47 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 49 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 407.87 15.07 6.15 6.15 Total: -1.00 -34.99 407.87 -8.48 -43.47 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.71 Total: -0.68 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 1.93 Total: -1.04 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.50 Total: -40.74 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.65 Total: -18.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.99 -8.48 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.699 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds