Wall clock time and date at job start Wed Apr 1 2020 04:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00076 * 2 1 4 4 C 1.53003 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47241 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47142 * 179.97438 * 5 4 3 7 7 C 1.47011 * 111.00056 * 293.95041 * 6 5 4 8 8 C 1.53099 * 109.26232 * 177.60774 * 7 6 5 9 9 O 1.43013 * 109.25451 * 56.84679 * 8 7 6 10 10 C 1.43016 * 113.74199 * 301.33451 * 9 8 7 11 11 C 1.52994 * 109.50505 * 298.68835 * 10 9 8 12 12 C 1.53004 * 109.50434 * 178.60455 * 10 9 8 13 13 N 1.46500 * 109.47331 * 64.99948 * 12 10 9 14 14 C 1.34774 * 119.99961 * 179.97438 * 13 12 10 15 15 O 1.21281 * 120.00138 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99741 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47173 * 179.97438 * 16 14 13 18 18 C 1.76189 * 100.00097 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00127 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00013 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00034 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48490 * 109.46901 * 150.00205 * 22 20 18 26 26 C 1.47011 * 110.99868 * 170.31814 * 6 5 4 27 27 H 1.09000 * 109.46965 * 59.99850 * 1 2 3 28 28 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47096 * 300.00589 * 1 2 3 30 30 H 1.09001 * 109.47026 * 59.99636 * 3 2 1 31 31 H 1.08998 * 109.46572 * 299.99590 * 3 2 1 32 32 H 1.09001 * 109.47042 * 59.99516 * 4 3 2 33 33 H 1.09000 * 109.46644 * 299.99639 * 4 3 2 34 34 H 1.09001 * 109.46861 * 59.99722 * 5 4 3 35 35 H 1.09003 * 109.46791 * 300.00174 * 5 4 3 36 36 H 1.09009 * 109.50597 * 57.67306 * 7 6 5 37 37 H 1.09004 * 109.50754 * 297.54818 * 7 6 5 38 38 H 1.09004 * 109.50627 * 296.92096 * 8 7 6 39 39 H 1.08993 * 109.50750 * 176.78429 * 8 7 6 40 40 H 1.08998 * 109.47379 * 299.91871 * 11 10 9 41 41 H 1.09000 * 109.47088 * 59.91392 * 11 10 9 42 42 H 1.09001 * 109.47351 * 179.91028 * 11 10 9 43 43 H 1.08997 * 109.47505 * 304.99540 * 12 10 9 44 44 H 1.09002 * 109.46765 * 185.00004 * 12 10 9 45 45 H 0.97002 * 119.99685 * 0.02562 * 13 12 10 46 46 H 1.09005 * 109.47318 * 59.99759 * 16 14 13 47 47 H 1.09002 * 109.47150 * 299.99724 * 16 14 13 48 48 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 49 49 H 1.09004 * 109.51050 * 62.45920 * 26 6 5 50 50 H 1.08997 * 109.50929 * 302.32476 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 7 5.6222 2.4664 0.0012 7 6 6.1024 1.8704 1.2564 8 6 7.6239 1.7132 1.1912 9 8 8.2191 2.9880 0.9346 10 6 7.7743 3.5971 -0.2805 11 6 8.1471 2.7043 -1.4657 12 6 8.4421 4.9643 -0.4409 13 7 9.8871 4.7860 -0.6035 14 6 10.6850 5.8604 -0.7628 15 8 10.2067 6.9749 -0.7720 16 6 12.1713 5.6769 -0.9307 17 16 12.9612 7.2942 -1.1218 18 6 14.6423 6.7954 -1.2936 19 1 14.9004 5.7472 -1.2624 20 6 15.6349 7.7496 -1.4689 21 7 16.8909 7.3770 -1.5967 22 14 15.1884 9.5627 -1.5234 23 1 14.9043 9.9606 -2.9256 24 1 13.9844 9.8013 -0.6875 25 1 16.3215 10.3674 -1.0005 26 6 6.2544 3.7733 -0.2301 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6440 0.8909 34 1 3.8358 3.1238 0.8895 35 1 3.8365 3.1227 -0.8905 36 1 5.6411 0.8925 1.3949 37 1 5.8389 2.5193 2.0917 38 1 7.8844 1.0220 0.3896 39 1 7.9907 1.3248 2.1412 40 1 9.2292 2.5780 -1.4993 41 1 7.6711 1.7305 -1.3509 42 1 7.8065 3.1682 -2.3914 43 1 8.2481 5.5696 0.4445 44 1 8.0367 5.4658 -1.3197 45 1 10.2695 3.8945 -0.5973 46 1 12.3650 5.0715 -1.8162 47 1 12.5771 5.1756 -0.0520 48 1 17.5845 8.0438 -1.7196 49 1 5.9935 4.4527 0.5814 50 1 5.9041 4.1846 -1.1768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107753439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:18 Heat of formation + Delta-G solvation = -150.563666 kcal Electronic energy + Delta-G solvation = -27986.096615 eV Core-core repulsion = 23945.757673 eV Total energy + Delta-G solvation = -4040.338943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44469 -40.37494 -38.98712 -37.41472 -36.03716 -34.66275 -33.69219 -33.01325 -30.97517 -29.94279 -28.17525 -27.89930 -27.35265 -26.38781 -24.87268 -23.57739 -21.86695 -21.72383 -20.40239 -19.88268 -18.14997 -17.77361 -17.57348 -17.21861 -17.13925 -17.04038 -16.82632 -16.47722 -16.22828 -15.96008 -15.75565 -15.66646 -15.25415 -14.93242 -14.87038 -14.74005 -14.46618 -14.36501 -13.80251 -13.39085 -13.32124 -13.22749 -13.00719 -12.98739 -12.93343 -12.69642 -12.64686 -12.57587 -12.24983 -12.21733 -11.99526 -11.86013 -11.68064 -11.33451 -11.16025 -11.02382 -10.64669 -10.58995 -10.52989 -10.14989 -9.40642 -8.98487 -8.50555 -6.21340 0.99503 1.32348 1.47642 1.56156 1.57473 2.17437 2.26532 2.54500 2.65982 2.73856 2.87780 3.05499 3.66489 3.70667 3.86752 3.89512 3.94401 3.98623 4.15653 4.19229 4.23212 4.27956 4.40485 4.42183 4.46941 4.47959 4.50563 4.52469 4.56225 4.61217 4.65178 4.69201 4.71101 4.80979 4.85586 4.89940 4.96615 5.04545 5.12967 5.21121 5.33588 5.38197 5.71723 5.89409 5.94054 6.12427 6.20620 6.22687 6.44440 6.94621 7.17648 8.61934 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.039129 B = 0.001579 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.406557 B =17725.312711 C =18063.920327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.060 3.940 4 C -0.107 4.107 5 C 0.061 3.939 6 N -0.533 5.533 7 C 0.016 3.984 8 C 0.057 3.943 9 O -0.391 6.391 10 C 0.115 3.885 11 C -0.165 4.165 12 C 0.137 3.863 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.112 4.112 17 S -0.173 6.173 18 C -0.531 4.531 19 H 0.062 0.938 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.237 1.237 25 H -0.259 1.259 26 C 0.037 3.963 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.415 0.585 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.277 0.723 49 H 0.041 0.959 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.928 -16.950 4.087 38.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.016 4.016 4 C -0.145 4.145 5 C -0.066 4.066 6 N -0.258 5.258 7 C -0.112 4.112 8 C -0.020 4.020 9 O -0.311 6.311 10 C 0.075 3.925 11 C -0.223 4.223 12 C 0.012 3.988 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.263 4.263 17 S 0.054 5.946 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.161 1.161 25 H -0.183 1.183 26 C -0.092 4.092 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.252 0.748 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -34.174 -15.481 3.795 37.708 hybrid contribution 0.618 -0.394 0.548 0.915 sum -33.556 -15.875 4.343 37.375 Atomic orbital electron populations 1.22905 0.79568 1.03728 1.00828 1.87829 1.21404 1.29052 1.95619 1.22537 0.93799 0.84328 1.00982 1.21390 0.92677 0.97008 1.03460 1.21995 0.86103 0.96637 1.01893 1.62140 1.06512 1.22578 1.34563 1.22881 0.96698 1.01266 0.90344 1.22850 0.91342 0.85013 1.02748 1.88079 1.67528 1.34785 1.40687 1.21649 0.92800 0.91905 0.86106 1.22250 1.01801 1.01032 0.97204 1.21329 0.79558 0.95627 1.02237 1.45661 1.07352 1.09171 1.73752 1.19920 0.87853 0.84583 0.75477 1.90683 1.76510 1.25806 1.51149 1.23264 0.94303 1.01529 1.07155 1.84667 1.03595 1.10459 1.95908 1.22477 0.91634 0.96578 1.57129 0.92017 1.25556 0.93941 1.03489 0.92861 1.70021 1.00713 1.36494 1.48299 0.85866 0.80219 0.79747 0.80538 1.18580 1.16113 1.18316 1.22606 0.93176 0.90598 1.02831 0.93176 0.88787 0.93252 0.92689 0.92321 0.90973 0.91399 0.94213 0.89440 0.88058 0.94499 0.91284 0.87271 0.92202 0.90173 0.90744 0.92185 0.89385 0.74773 0.86743 0.87114 0.91371 0.94091 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -5.80 10.70 -148.98 -1.59 -7.40 16 3 C 0.06 0.58 5.94 71.98 0.43 1.01 16 4 C -0.11 -1.05 5.51 30.60 0.17 -0.88 16 5 C 0.06 0.57 4.96 86.30 0.43 1.00 16 6 N -0.53 -6.34 4.10 -895.22 -3.67 -10.01 16 7 C 0.02 0.19 5.43 86.32 0.47 0.66 16 8 C 0.06 0.75 6.61 72.02 0.48 1.22 16 9 O -0.39 -7.33 10.23 -148.98 -1.52 -8.85 16 10 C 0.12 1.89 0.78 -10.76 -0.01 1.88 16 11 C -0.17 -2.37 7.94 71.98 0.57 -1.80 16 12 C 0.14 2.97 4.85 86.38 0.42 3.39 16 13 N -0.71 -17.81 5.19 -463.06 -2.40 -20.22 16 14 C 0.54 18.88 7.85 87.66 0.69 19.57 16 15 O -0.56 -24.26 15.86 -3.03 -0.05 -24.31 16 16 C -0.11 -4.30 6.16 71.24 0.44 -3.86 16 17 S -0.17 -8.84 18.55 -56.49 -1.05 -9.88 16 18 C -0.53 -31.22 10.04 67.96 0.68 -30.54 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.77 5.50 84.86 0.47 3.24 16 21 N -0.92 -56.21 13.97 21.65 0.30 -55.91 16 22 Si 0.91 45.27 27.74 68.60 1.90 47.17 16 23 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.04 0.50 4.34 86.31 0.37 0.87 16 27 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.71 6.51 -2.39 -0.02 0.70 16 34 H 0.04 0.37 8.12 -2.39 -0.02 0.35 16 35 H 0.09 0.70 8.04 -2.39 -0.02 0.68 16 36 H 0.10 0.93 6.37 -2.38 -0.02 0.92 16 37 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.84 6.49 -2.38 -0.02 0.82 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 0.89 6.58 -2.39 -0.02 0.87 16 41 H 0.08 1.10 6.13 -2.39 -0.01 1.08 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.41 8.61 7.00 -92.71 -0.65 7.96 16 46 H 0.11 4.01 8.14 -2.39 -0.02 4.00 16 47 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 48 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 50 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -74.96 407.87 -1.00 -75.96 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.23 Total: 16.24 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 6.85 Total: -2.79 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -5.77 Total: -86.14 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -3.17 Total: -40.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.88 kcal Total: -74.96 -1.00 -75.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107753439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.603 kcal (2) G-P(sol) polarization free energy of solvation -74.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds