Wall clock time and date at job start Wed Apr 1 2020 04:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.51407 * 2 1 4 4 N 1.46508 * 109.46827 * 59.89317 * 3 2 1 5 5 C 1.34777 * 119.99379 * 179.97438 * 4 3 2 6 6 O 1.21273 * 120.00379 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99502 * 180.02562 * 5 4 3 8 8 H 1.09003 * 110.80638 * 53.14029 * 7 5 4 9 9 C 1.54700 * 110.75281 * 289.82387 * 7 5 4 10 10 C 1.51645 * 101.93042 * 216.40001 * 9 7 5 11 11 C 1.37747 * 132.17411 * 195.89027 * 10 9 7 12 12 C 1.38352 * 119.97747 * 179.00805 * 11 10 9 13 13 C 1.38287 * 119.76579 * 359.97438 * 12 11 10 14 14 C 1.37934 * 120.35257 * 0.20653 * 13 12 11 15 15 C 1.38881 * 107.04050 * 15.34974 * 10 9 7 16 16 O 1.36140 * 111.23193 * 1.11780 * 15 10 9 17 17 C 1.53293 * 109.51429 * 239.89966 * 2 1 3 18 18 N 1.47154 * 108.38270 * 292.32655 * 17 2 1 19 19 C 1.36936 * 120.98450 * 129.44446 * 18 17 2 20 20 H 1.07999 * 120.00104 * 206.23636 * 19 18 17 21 21 C 1.38821 * 119.99708 * 26.23727 * 19 18 17 22 22 N 1.31614 * 119.99934 * 16.91256 * 21 19 18 23 23 Si 1.86799 * 119.99761 * 196.91808 * 21 19 18 24 24 H 1.48492 * 109.47458 * 89.99824 * 23 21 19 25 25 H 1.48505 * 109.46944 * 210.00091 * 23 21 19 26 26 H 1.48501 * 109.46890 * 329.99727 * 23 21 19 27 27 C 1.47150 * 118.03439 * 309.46283 * 18 17 2 28 28 C 1.53295 * 108.38798 * 50.53567 * 27 18 17 29 29 O 1.42959 * 109.22057 * 307.69939 * 28 27 18 30 30 H 1.08998 * 109.47380 * 59.99941 * 1 2 3 31 31 H 1.09001 * 109.46808 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47484 * 299.99612 * 1 2 3 33 33 H 1.09007 * 109.46973 * 299.90350 * 3 2 1 34 34 H 1.08988 * 109.47634 * 179.89957 * 3 2 1 35 35 H 0.96993 * 120.00186 * 0.02562 * 4 3 2 36 36 H 1.09004 * 110.94124 * 98.23778 * 9 7 5 37 37 H 1.08999 * 110.97257 * 334.56895 * 9 7 5 38 38 H 1.07997 * 120.01136 * 358.98312 * 11 10 9 39 39 H 1.07989 * 120.11714 * 180.02562 * 12 11 10 40 40 H 1.07996 * 119.82354 * 180.22183 * 13 12 11 41 41 H 1.07997 * 119.88310 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.68201 * 52.04960 * 17 2 1 43 43 H 1.09003 * 109.68128 * 172.56922 * 17 2 1 44 44 H 0.97000 * 119.99583 * 179.97438 * 22 21 19 45 45 H 1.09002 * 109.68286 * 170.26387 * 27 18 17 46 46 H 1.09002 * 109.68587 * 290.81042 * 27 18 17 47 47 H 1.09000 * 109.51064 * 67.61943 * 28 27 18 48 48 H 1.08993 * 109.51546 * 187.76883 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5511 2.1338 1.1950 5 6 1.8777 3.4239 1.4082 6 8 2.5768 4.0123 0.6108 7 6 1.3742 4.1353 2.6377 8 1 1.6207 3.5732 3.5385 9 6 -0.1506 4.3792 2.5440 10 6 -0.2922 5.7363 3.2058 11 6 -1.3834 6.4120 3.7059 12 6 -1.2190 7.6567 4.2870 13 6 0.0428 8.2174 4.3636 14 6 1.1364 7.5441 3.8601 15 6 0.9787 6.2928 3.2692 16 8 1.9061 5.4691 2.7082 17 6 2.0420 -0.7246 -1.2500 18 7 1.6970 -2.1504 -1.1339 19 6 1.0620 -2.8074 -2.1538 20 1 0.4494 -3.6711 -1.9412 21 6 1.2055 -2.3632 -3.4612 22 7 2.1869 -1.5438 -3.7738 23 14 0.0058 -2.9283 -4.7767 24 1 -1.1371 -1.9826 -4.8437 25 1 0.6947 -2.9662 -6.0917 26 1 -0.4940 -4.2857 -4.4405 27 6 2.0543 -2.8493 0.1108 28 6 1.5417 -2.0212 1.2946 29 8 2.0085 -0.6762 1.1652 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6795 1.9558 -0.8909 34 1 3.1309 1.4414 0.0018 35 1 0.9923 1.6632 1.8329 36 1 -0.7016 3.6174 3.0955 37 1 -0.4765 4.4170 1.5045 38 1 -2.3670 5.9704 3.6440 39 1 -2.0728 8.1883 4.6801 40 1 0.1728 9.1874 4.8202 41 1 2.1185 7.9889 3.9243 42 1 1.5697 -0.3037 -2.1377 43 1 3.1239 -0.6128 -1.3218 44 1 2.2874 -1.2337 -4.6874 45 1 1.5902 -3.8355 0.1243 46 1 3.1375 -2.9520 0.1763 47 1 0.4517 -2.0293 1.2997 48 1 1.9140 -2.4479 2.2258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108058651.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:28 Heat of formation + Delta-G solvation = -50.762889 kcal Electronic energy + Delta-G solvation = -30641.921457 eV Core-core repulsion = 26470.466250 eV Total energy + Delta-G solvation = -4171.455208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60824 -39.69110 -38.77300 -37.48400 -35.02353 -34.39423 -33.15751 -31.83679 -31.30332 -30.33956 -29.82531 -28.00759 -26.60152 -25.81610 -24.25722 -23.28029 -22.59742 -21.94344 -21.32106 -20.50608 -18.80993 -17.93884 -17.63618 -17.11088 -16.93278 -16.32686 -15.88790 -15.48681 -15.18191 -15.00598 -14.55150 -14.39945 -14.25170 -14.07550 -13.75995 -13.59009 -13.51603 -13.36833 -13.26395 -13.05588 -12.82611 -12.54226 -12.28059 -12.06467 -11.90894 -11.65498 -11.44205 -11.24841 -11.09842 -11.06693 -10.87184 -10.72484 -10.36364 -10.28223 -10.05885 -9.83749 -9.59056 -9.21372 -9.11705 -8.95665 -8.58275 -8.43387 -6.79177 -5.88718 -3.32356 0.96435 1.07473 2.40194 2.62201 3.30274 3.31771 3.38233 3.39890 3.51669 4.03716 4.16293 4.23398 4.39713 4.53604 4.59489 4.73687 4.77171 4.92387 5.07508 5.08640 5.23810 5.29203 5.35279 5.39151 5.40864 5.45875 5.61223 5.70408 5.85926 5.88178 5.94244 5.99837 6.02331 6.07946 6.08967 6.16274 6.24256 6.27662 6.36882 6.48370 6.60117 6.69494 6.77224 6.88058 7.01932 7.41465 7.49606 7.66856 7.81411 8.17767 8.28615 9.06426 9.69418 10.26384 11.19293 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.002239 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.483295 B =12499.843375 C =12800.192771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.141 3.859 4 N -0.709 5.709 5 C 0.514 3.486 6 O -0.519 6.519 7 C 0.065 3.935 8 H 0.113 0.887 9 C -0.098 4.098 10 C -0.174 4.174 11 C -0.068 4.068 12 C -0.151 4.151 13 C -0.085 4.085 14 C -0.137 4.137 15 C 0.108 3.892 16 O -0.274 6.274 17 C 0.159 3.841 18 N -0.590 5.590 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.109 3.891 28 C 0.046 3.954 29 O -0.384 6.384 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.048 0.952 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.457 13.504 17.950 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.363 5.363 5 C 0.297 3.703 6 O -0.394 6.394 7 C 0.005 3.995 8 H 0.131 0.869 9 C -0.136 4.136 10 C -0.175 4.175 11 C -0.086 4.086 12 C -0.169 4.169 13 C -0.103 4.103 14 C -0.156 4.156 15 C 0.063 3.937 16 O -0.186 6.186 17 C 0.032 3.968 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.018 4.018 28 C -0.032 4.032 29 O -0.304 6.304 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.238 0.762 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.044 0.956 47 H 0.066 0.934 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.534 14.081 17.206 23.174 hybrid contribution -1.031 -0.817 -0.638 1.462 sum -7.565 13.263 16.569 22.532 Atomic orbital electron populations 1.22209 0.95686 1.03328 1.00718 1.22555 0.93588 0.90470 0.89675 1.21427 1.00095 0.89900 0.86850 1.45829 1.53273 1.10774 1.26385 1.19905 0.81321 0.82376 0.86663 1.90764 1.36651 1.65939 1.46035 1.23207 0.93412 0.84226 0.98658 0.86936 1.21739 0.93961 0.95064 1.02803 1.20728 0.94058 0.98100 1.04577 1.20319 0.97473 0.94360 0.96428 1.21040 0.97541 0.95789 1.02556 1.20890 0.91868 0.99401 0.98122 1.20285 1.00374 0.93363 1.01558 1.19657 0.87745 0.92876 0.93447 1.86961 1.38407 1.17346 1.75908 1.21297 0.97904 0.83976 0.93581 1.43993 1.68587 1.04895 1.13901 1.19165 1.21689 1.12215 0.85371 0.91364 1.25050 0.97264 1.00097 0.97116 1.70009 1.29116 1.36765 1.18606 0.86272 0.80681 0.78440 0.81271 1.21360 1.21657 1.20422 1.21600 0.97587 0.95236 0.87342 1.23040 0.98301 0.83057 0.98772 1.87811 1.72954 1.25855 1.43768 0.91822 0.90731 0.93970 0.89824 0.90559 0.76154 0.87957 0.88411 0.85612 0.85423 0.85092 0.85255 0.88493 0.95185 0.93372 0.92022 0.95625 0.93359 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.92 37.16 0.29 -2.29 16 2 C 0.08 1.38 0.76 -90.47 -0.07 1.31 16 3 C 0.14 2.31 4.82 -4.04 -0.02 2.29 16 4 N -0.71 -9.52 5.15 -60.29 -0.31 -9.83 16 5 C 0.51 7.52 7.13 -10.98 -0.08 7.45 16 6 O -0.52 -10.01 16.57 -13.47 -0.22 -10.24 16 7 C 0.06 0.75 4.05 -26.99 -0.11 0.64 16 8 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.10 -0.92 6.63 -26.52 -0.18 -1.09 16 10 C -0.17 -1.79 6.27 -104.10 -0.65 -2.44 16 11 C -0.07 -0.57 10.03 -39.72 -0.40 -0.97 16 12 C -0.15 -1.14 10.07 -39.52 -0.40 -1.53 16 13 C -0.08 -0.66 10.02 -39.67 -0.40 -1.06 16 14 C -0.14 -1.36 10.06 -39.31 -0.40 -1.76 16 15 C 0.11 1.30 7.04 -38.96 -0.27 1.03 16 16 O -0.27 -3.88 10.39 -39.22 -0.41 -4.29 16 17 C 0.16 3.60 4.11 -3.53 -0.01 3.59 16 18 N -0.59 -13.97 2.57 -171.82 -0.44 -14.42 16 19 C -0.26 -6.64 9.65 -15.06 -0.15 -6.78 16 20 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 22 N -0.90 -25.32 11.14 55.49 0.62 -24.70 16 23 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.11 2.16 6.73 -3.53 -0.02 2.14 16 28 C 0.05 0.76 6.60 37.31 0.25 1.00 16 29 O -0.38 -6.69 9.98 -35.23 -0.35 -7.04 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.32 6.12 -51.93 -0.32 1.00 16 32 H 0.04 0.54 6.86 -51.93 -0.36 0.18 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.37 8.14 -51.94 -0.42 0.94 16 35 H 0.40 4.46 7.20 -40.82 -0.29 4.17 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.10 2.43 6.13 -51.93 -0.32 2.11 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -32.56 385.54 -10.09 -42.65 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.06 Total: 4.59 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.70 Total: 1.52 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.13 Total: -48.95 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.98 Total: -21.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.56 -10.09 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108058651.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.117 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds